Wall clock time and date at job start Sat Apr 11 2020 04:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47261 * 2 1 4 4 C 1.36451 * 127.14206 * 91.26596 * 3 2 1 5 5 N 1.38582 * 126.47041 * 359.97438 * 4 3 2 6 6 C 1.46897 * 111.00333 * 304.13282 * 5 4 3 7 7 C 1.46905 * 111.00097 * 180.17439 * 5 4 3 8 8 C 1.52997 * 109.46963 * 190.00166 * 7 5 4 9 9 O 1.42896 * 109.47059 * 65.00501 * 8 7 5 10 10 C 1.42901 * 114.00026 * 179.97438 * 9 8 7 11 11 C 1.52999 * 109.47529 * 179.97438 * 10 9 8 12 12 C 1.53002 * 117.50067 * 243.62715 * 11 10 9 13 13 C 1.52998 * 117.50162 * 175.00278 * 11 10 9 14 14 N 1.31216 * 107.05778 * 180.24229 * 4 3 2 15 15 N 1.28531 * 109.85778 * 359.75593 * 14 4 3 16 16 C 1.30292 * 110.05267 * 0.02562 * 15 14 4 17 17 C 1.50699 * 126.34502 * 179.97438 * 16 15 14 18 18 C 1.52994 * 109.47129 * 234.27591 * 17 16 15 19 19 C 1.53003 * 109.47051 * 114.27506 * 17 16 15 20 20 C 1.50700 * 109.47384 * 354.27762 * 17 16 15 21 21 H 1.08001 * 119.99780 * 4.79907 * 20 17 16 22 22 C 1.37876 * 120.00320 * 184.80580 * 20 17 16 23 23 N 1.31515 * 120.00059 * 187.18769 * 22 20 17 24 24 Si 1.86800 * 120.00003 * 7.46389 * 22 20 17 25 25 H 1.48505 * 109.47093 * 92.61787 * 24 22 20 26 26 H 1.48493 * 109.47220 * 212.61812 * 24 22 20 27 27 H 1.48504 * 109.47205 * 332.62004 * 24 22 20 28 28 H 1.08994 * 109.47410 * 185.16202 * 1 2 3 29 29 H 1.09006 * 109.47032 * 305.16255 * 1 2 3 30 30 H 1.09006 * 109.47002 * 65.15975 * 1 2 3 31 31 H 1.09002 * 109.47289 * 239.99473 * 2 1 3 32 32 H 1.09003 * 109.46902 * 119.99817 * 2 1 3 33 33 H 1.08995 * 109.47374 * 73.83900 * 6 5 4 34 34 H 1.08999 * 109.47148 * 193.84481 * 6 5 4 35 35 H 1.09002 * 109.46726 * 313.84097 * 6 5 4 36 36 H 1.08997 * 109.46939 * 310.00352 * 7 5 4 37 37 H 1.08997 * 109.46739 * 70.00200 * 7 5 4 38 38 H 1.09004 * 109.47005 * 185.00108 * 8 7 5 39 39 H 1.08992 * 109.47484 * 304.99963 * 8 7 5 40 40 H 1.08996 * 109.47411 * 299.99759 * 10 9 8 41 41 H 1.09001 * 109.47270 * 59.99579 * 10 9 8 42 42 H 1.09005 * 115.54846 * 29.32997 * 11 10 9 43 43 H 1.08996 * 117.49951 * 359.97438 * 12 11 10 44 44 H 1.08995 * 117.50107 * 145.01765 * 12 11 10 45 45 H 1.09003 * 117.49930 * 214.98352 * 13 11 10 46 46 H 1.08997 * 117.49966 * 359.97438 * 13 11 10 47 47 H 1.09006 * 109.47180 * 169.72901 * 18 17 16 48 48 H 1.09008 * 109.47054 * 289.72642 * 18 17 16 49 49 H 1.08996 * 109.47486 * 49.72595 * 18 17 16 50 50 H 1.08995 * 109.47257 * 307.70500 * 19 17 16 51 51 H 1.09002 * 109.47026 * 67.71043 * 19 17 16 52 52 H 1.09007 * 109.46714 * 187.70562 * 19 17 16 53 53 H 0.96999 * 119.99944 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3157 2.1499 1.0874 5 7 2.2125 1.7717 2.4166 6 6 0.8527 1.3123 2.7294 7 6 2.6164 2.8669 3.3085 8 6 2.7299 2.3423 4.7413 9 8 3.7879 1.3847 4.8155 10 6 3.9795 0.8301 6.1185 11 6 5.1304 -0.1772 6.0800 12 6 4.8004 -1.6392 6.3880 13 6 5.5711 -0.7977 7.4073 14 7 2.7121 3.3169 0.6371 15 7 2.6854 3.3209 -0.6480 16 6 2.2733 2.1666 -1.0899 17 6 2.1036 1.7721 -2.5344 18 6 0.6796 1.2598 -2.7593 19 6 3.1039 0.6679 -2.8824 20 6 2.3513 2.9699 -3.4147 21 1 2.6815 3.9013 -2.9789 22 6 2.1563 2.8769 -4.7765 23 7 2.5057 3.8734 -5.5604 24 14 1.3887 1.3386 -5.5071 25 1 -0.0809 1.5225 -5.6159 26 1 1.9582 1.0943 -6.8565 27 1 1.6784 0.1761 -4.6296 28 1 -0.3634 -1.0234 0.0925 29 1 -0.3633 0.5919 0.8402 30 1 -0.3633 0.4317 -0.9326 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 0.6932 0.3260 2.2937 34 1 0.7278 1.2565 3.8107 35 1 0.1282 2.0138 2.3157 36 1 3.5814 3.2594 2.9879 37 1 1.8703 3.6605 3.2702 38 1 2.9424 3.1715 5.4161 39 1 1.7912 1.8699 5.0307 40 1 4.2182 1.6281 6.8216 41 1 3.0668 0.3264 6.4369 42 1 5.9020 0.0187 5.3353 43 1 3.7635 -1.8832 6.6185 44 1 5.3547 -2.4052 5.8459 45 1 6.6324 -1.0102 7.5358 46 1 5.0413 -0.4879 8.3081 47 1 0.4985 1.1472 -3.8283 48 1 0.5587 0.2948 -2.2667 49 1 -0.0328 1.9719 -2.3430 50 1 4.1069 0.9823 -2.5943 51 1 2.8404 -0.2434 -2.3456 52 1 3.0768 0.4782 -3.9555 53 1 2.3689 3.8077 -6.5184 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520933105.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:54:54 Heat of formation + Delta-G solvation = 81.877479 kcal Electronic energy + Delta-G solvation = -30726.278756 eV Core-core repulsion = 26829.615774 eV Total energy + Delta-G solvation = -3896.662982 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.227 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.93184 -39.74704 -38.68036 -38.06025 -37.20181 -36.17651 -33.76088 -31.66870 -31.19732 -30.24221 -28.23810 -27.74858 -27.10664 -26.75879 -25.02595 -23.90131 -23.28725 -23.18022 -21.65266 -21.25493 -20.75624 -18.51349 -18.11536 -17.93378 -17.48138 -17.23923 -17.14270 -16.50627 -16.29156 -15.86296 -15.56408 -15.38821 -15.09241 -15.02019 -14.88494 -14.29442 -14.10875 -14.04728 -13.98623 -13.79543 -13.70885 -13.31067 -13.08893 -12.84212 -12.61570 -12.44758 -12.35978 -12.30070 -12.23774 -12.10361 -12.05624 -11.89290 -11.74895 -11.46583 -11.31716 -11.17447 -11.07545 -10.81759 -10.77712 -10.53618 -10.50641 -10.34581 -9.13491 -8.22530 -6.28079 0.95717 1.34660 1.36279 1.38238 1.51684 2.02179 2.36421 2.56718 2.69548 2.99568 3.10756 3.54817 3.66529 3.79890 3.92500 3.98470 4.02713 4.06623 4.07215 4.10432 4.20130 4.28517 4.34658 4.37455 4.39292 4.46449 4.47571 4.53697 4.55867 4.61059 4.61638 4.68573 4.72375 4.75626 4.78900 4.79934 4.82500 4.86448 4.96753 5.03254 5.04631 5.17109 5.20821 5.25837 5.27327 5.35036 5.55820 5.60243 5.69886 5.73918 6.28404 6.37725 6.46105 6.84440 7.34317 8.02006 8.95275 Molecular weight = 336.23amu Principal moments of inertia in cm(-1) A = 0.019659 B = 0.002663 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.975631 B =10513.282762 C =10723.963507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.089 3.911 3 N -0.476 5.476 4 C 0.347 3.653 5 N -0.439 5.439 6 C 0.009 3.991 7 C 0.071 3.929 8 C 0.073 3.927 9 O -0.398 6.398 10 C 0.092 3.908 11 C -0.173 4.173 12 C -0.177 4.177 13 C -0.164 4.164 14 N -0.375 5.375 15 N -0.332 5.332 16 C 0.224 3.776 17 C 0.121 3.879 18 C -0.145 4.145 19 C -0.143 4.143 20 C -0.505 4.505 21 H 0.036 0.964 22 C 0.009 3.991 23 N -0.951 5.951 24 Si 0.941 3.059 25 H -0.279 1.279 26 H -0.310 1.310 27 H -0.194 1.194 28 H 0.115 0.885 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.105 0.895 32 H 0.116 0.884 33 H 0.096 0.904 34 H 0.112 0.888 35 H 0.031 0.969 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.092 0.908 43 H 0.104 0.896 44 H 0.094 0.906 45 H 0.101 0.899 46 H 0.108 0.892 47 H 0.043 0.957 48 H 0.091 0.909 49 H 0.046 0.954 50 H 0.033 0.967 51 H 0.072 0.928 52 H 0.066 0.934 53 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.075 -17.402 26.931 32.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.032 4.032 3 N -0.171 5.171 4 C -0.010 4.010 5 N -0.163 5.163 6 C -0.137 4.137 7 C -0.056 4.056 8 C -0.003 4.003 9 O -0.318 6.318 10 C 0.016 3.984 11 C -0.191 4.191 12 C -0.213 4.213 13 C -0.201 4.201 14 N -0.220 5.220 15 N -0.168 5.168 16 C -0.046 4.046 17 C 0.117 3.883 18 C -0.202 4.202 19 C -0.201 4.201 20 C -0.544 4.544 21 H 0.054 0.946 22 C -0.187 4.187 23 N -0.591 5.591 24 Si 0.769 3.231 25 H -0.206 1.206 26 H -0.239 1.239 27 H -0.117 1.117 28 H 0.134 0.866 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.123 0.877 32 H 0.134 0.866 33 H 0.115 0.885 34 H 0.131 0.869 35 H 0.050 0.950 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.110 0.890 43 H 0.122 0.878 44 H 0.112 0.888 45 H 0.120 0.880 46 H 0.127 0.873 47 H 0.061 0.939 48 H 0.110 0.890 49 H 0.065 0.935 50 H 0.053 0.947 51 H 0.091 0.909 52 H 0.085 0.915 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.141 -16.349 26.767 31.637 hybrid contribution -0.799 0.040 -1.022 1.298 sum -4.940 -16.308 25.746 30.874 Atomic orbital electron populations 1.22689 0.92517 1.05590 1.03787 1.22403 0.97060 0.77489 1.06261 1.46390 1.51687 1.14727 1.04319 1.22900 1.01601 0.88038 0.88482 1.58771 1.26570 1.35997 0.94968 1.23065 0.84407 1.01524 1.04686 1.22110 1.01826 0.90511 0.91178 1.22629 0.91163 0.92465 0.94063 1.88001 1.54211 1.58905 1.30645 1.22082 0.96732 0.95191 0.84382 1.22131 1.00799 0.95144 1.01037 1.23128 1.01960 0.93149 1.03104 1.23057 1.01470 1.02779 0.92745 1.74456 1.25949 1.17512 1.04051 1.74006 1.20062 1.20397 1.02345 1.25040 1.00041 0.87497 0.91992 1.17026 0.94292 0.94818 0.82153 1.22567 0.96136 1.01117 1.00402 1.22371 0.98459 0.97045 1.02199 1.20953 1.44832 0.97019 0.91595 0.94587 1.25968 0.95607 1.00150 0.97012 1.70094 1.49148 1.35156 1.04713 0.86362 0.77812 0.82349 0.76582 1.20618 1.23932 1.11669 0.86634 0.91493 0.91677 0.87667 0.86627 0.88511 0.86942 0.94993 0.91327 0.91317 0.90357 0.90539 0.92215 0.91863 0.88998 0.87757 0.88764 0.88036 0.87322 0.93891 0.89042 0.93537 0.94748 0.90942 0.91516 0.92665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.32 9.11 71.98 0.66 -2.66 16 2 C 0.09 2.01 5.04 86.38 0.43 2.45 16 3 N -0.48 -16.60 2.81 -514.86 -1.44 -18.04 16 4 C 0.35 12.70 7.12 260.11 1.85 14.55 16 5 N -0.44 -11.70 4.76 -730.94 -3.48 -15.18 16 6 C 0.01 0.16 8.04 127.69 1.03 1.19 16 7 C 0.07 1.75 4.82 86.30 0.42 2.16 16 8 C 0.07 1.22 6.02 71.98 0.43 1.66 16 9 O -0.40 -8.46 10.29 -148.98 -1.53 -9.99 16 10 C 0.09 1.36 6.22 71.98 0.45 1.81 16 11 C -0.17 -2.71 6.06 -10.79 -0.07 -2.77 16 12 C -0.18 -2.18 10.18 30.60 0.31 -1.87 16 13 C -0.16 -1.78 10.25 30.59 0.31 -1.47 16 14 N -0.38 -17.48 11.16 -58.01 -0.65 -18.13 16 15 N -0.33 -17.70 11.00 -49.54 -0.54 -18.24 16 16 C 0.22 10.22 6.31 137.64 0.87 11.09 16 17 C 0.12 5.51 0.49 -53.68 -0.03 5.49 16 18 C -0.15 -5.52 6.17 71.98 0.44 -5.08 16 19 C -0.14 -5.72 7.68 71.98 0.55 -5.17 16 20 C -0.51 -29.95 8.52 25.60 0.22 -29.73 16 21 H 0.04 2.52 7.20 -2.91 -0.02 2.50 16 22 C 0.01 0.51 5.41 84.65 0.46 0.97 16 23 N -0.95 -61.56 13.96 21.45 0.30 -61.26 16 24 Si 0.94 42.40 22.75 68.60 1.56 43.96 16 25 H -0.28 -12.19 7.10 99.48 0.71 -11.48 16 26 H -0.31 -14.35 7.11 99.48 0.71 -13.64 16 27 H -0.19 -7.07 4.44 99.48 0.44 -6.63 16 28 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.07 1.16 5.38 -2.38 -0.01 1.15 16 30 H 0.06 1.42 4.78 -2.38 -0.01 1.40 16 31 H 0.11 2.27 4.92 -2.39 -0.01 2.26 16 32 H 0.12 2.11 7.32 -2.39 -0.02 2.09 16 33 H 0.10 1.42 4.77 -2.39 -0.01 1.41 16 34 H 0.11 1.30 5.84 -2.39 -0.01 1.28 16 35 H 0.03 0.64 7.61 -2.39 -0.02 0.62 16 36 H 0.07 2.15 7.76 -2.39 -0.02 2.13 16 37 H 0.07 1.64 8.12 -2.39 -0.02 1.63 16 38 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.08 0.87 6.09 -2.39 -0.01 0.86 16 40 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.06 0.71 7.87 -2.39 -0.02 0.69 16 42 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 43 H 0.10 1.06 8.03 -2.39 -0.02 1.04 16 44 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.04 1.70 2.14 -2.38 -0.01 1.69 16 48 H 0.09 2.58 4.39 -2.38 -0.01 2.57 16 49 H 0.05 1.82 7.86 -2.39 -0.02 1.81 16 50 H 0.03 1.47 8.13 -2.39 -0.02 1.45 16 51 H 0.07 2.20 5.75 -2.39 -0.01 2.19 16 52 H 0.07 2.68 4.23 -2.38 -0.01 2.67 16 53 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 Total: -1.00 -84.96 386.31 3.22 -81.74 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: 0.66 Total: 22.53 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: 8.34 Total: -7.39 kcal Atomic # 7 Polarization: -125.04 SS G_CDS: -5.81 Total: -130.85 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: -1.53 Total: -9.99 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 1.56 Total: 43.96 kcal Total: -84.96 3.22 -81.74 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520933105.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.617 kcal (2) G-P(sol) polarization free energy of solvation -84.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds