Wall clock time and date at job start Sat Apr 11 2020 04:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99994 * 2 1 4 4 C 1.52995 * 109.47292 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47403 * 179.97438 * 4 3 2 6 6 C 1.36740 * 127.13451 * 273.46489 * 5 4 3 7 7 C 1.50704 * 126.34699 * 359.97438 * 6 5 4 8 8 C 1.52994 * 109.47180 * 270.01855 * 7 6 5 9 9 C 1.52999 * 109.47481 * 179.97438 * 8 7 6 10 10 C 1.50691 * 109.47456 * 180.02562 * 9 8 7 11 11 H 1.07997 * 120.00212 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00172 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00137 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00212 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46945 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.46997 * 119.99342 * 14 12 10 17 17 H 1.48495 * 109.47115 * 239.99753 * 14 12 10 18 18 N 1.30292 * 107.30582 * 180.02562 * 6 5 4 19 19 N 1.28533 * 110.05413 * 359.97438 * 18 6 5 20 20 C 1.31214 * 109.85711 * 0.02562 * 19 18 6 21 21 N 1.38580 * 126.46790 * 179.73902 * 20 19 18 22 22 C 1.48530 * 111.00092 * 294.51024 * 21 20 19 23 23 C 1.54940 * 103.22936 * 159.72195 * 22 21 20 24 24 C 1.54597 * 102.92174 * 322.59155 * 23 22 21 25 25 H 1.09003 * 110.30468 * 262.93844 * 24 23 22 26 26 C 1.52998 * 110.31161 * 140.87037 * 24 23 22 27 27 C 1.47899 * 111.00704 * 51.91111 * 21 20 19 28 28 H 1.09005 * 109.91306 * 333.51421 * 27 21 20 29 29 C 1.52998 * 109.91976 * 94.79872 * 27 21 20 30 30 H 1.09001 * 109.46745 * 60.00887 * 1 2 3 31 31 H 1.09000 * 109.46692 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46837 * 300.00727 * 1 2 3 33 33 H 1.08992 * 109.47645 * 59.99124 * 3 2 1 34 34 H 1.09011 * 109.46840 * 299.99462 * 3 2 1 35 35 H 1.09000 * 109.47444 * 59.99653 * 4 3 2 36 36 H 1.09005 * 109.46962 * 299.99153 * 4 3 2 37 37 H 1.08998 * 109.46739 * 30.01720 * 7 6 5 38 38 H 1.08995 * 109.47222 * 150.01557 * 7 6 5 39 39 H 1.08998 * 109.47526 * 300.00488 * 8 7 6 40 40 H 1.09003 * 109.47125 * 59.99996 * 8 7 6 41 41 H 1.09006 * 109.47059 * 300.00502 * 9 8 7 42 42 H 1.09003 * 109.46849 * 59.99943 * 9 8 7 43 43 H 0.97000 * 120.00425 * 180.02562 * 13 12 10 44 44 H 1.08991 * 110.67263 * 278.16018 * 22 21 20 45 45 H 1.09005 * 110.66333 * 41.12544 * 22 21 20 46 46 H 1.09003 * 110.71993 * 80.94905 * 23 22 21 47 47 H 1.09003 * 110.72608 * 204.22883 * 23 22 21 48 48 H 1.09006 * 109.46781 * 61.45457 * 26 24 23 49 49 H 1.08992 * 109.47403 * 181.44966 * 26 24 23 50 50 H 1.08995 * 109.47061 * 301.45409 * 26 24 23 51 51 H 1.08996 * 109.47029 * 58.55030 * 29 27 21 52 52 H 1.08998 * 109.47571 * 178.55521 * 29 27 21 53 53 H 1.09001 * 109.47287 * 298.55005 * 29 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1313 2.5230 -0.0013 6 6 4.4064 3.3037 -1.0897 7 6 4.1522 2.9471 -2.5317 8 6 5.3815 2.2409 -3.1068 9 6 5.1233 1.8783 -4.5706 10 6 6.3339 1.1821 -5.1369 11 1 7.2010 1.0153 -4.5151 12 6 6.3349 0.7590 -6.4491 13 7 5.2793 0.9626 -7.2066 14 14 7.8359 -0.1034 -7.1513 15 1 8.8821 -0.2084 -6.1026 16 1 7.4558 -1.4637 -7.6099 17 1 8.3631 0.6769 -8.2994 18 7 4.9301 4.4124 -0.6491 19 7 5.0035 4.3858 0.6338 20 6 4.5272 3.2491 1.0841 21 7 4.4466 2.8577 2.4110 22 6 5.7999 2.6929 3.0005 23 6 5.5367 2.7872 4.5245 24 6 4.4352 3.8678 4.6189 25 1 4.8762 4.8386 4.8455 26 6 3.4095 3.4886 5.6889 27 6 3.7737 3.8903 3.2285 28 1 3.9055 4.8706 2.7703 29 6 2.2838 3.5661 3.3548 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.6886 1.8465 0.8898 34 1 1.6887 1.8463 -0.8901 35 1 3.8568 0.6439 -0.8908 36 1 3.8575 0.6437 0.8892 37 1 3.2894 2.2842 -2.5954 38 1 3.9554 3.8553 -3.1013 39 1 6.2445 2.9037 -3.0431 40 1 5.5784 1.3326 -2.5372 41 1 4.2604 1.2152 -4.6339 42 1 4.9262 2.7864 -5.1405 43 1 5.2798 0.6646 -8.1297 44 1 6.2165 1.7196 2.7416 45 1 6.4627 3.4934 2.6718 46 1 5.1768 1.8346 4.9133 47 1 6.4357 3.1055 5.0523 48 1 3.9023 3.4278 6.6592 49 1 2.6264 4.2458 5.7261 50 1 2.9691 2.5222 5.4437 51 1 2.1633 2.5829 3.8096 52 1 1.8002 4.3171 3.9794 53 1 1.8265 3.5673 2.3654 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001523559191.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:52:40 Heat of formation + Delta-G solvation = 8.361784 kcal Electronic energy + Delta-G solvation = -30334.362138 eV Core-core repulsion = 26434.511276 eV Total energy + Delta-G solvation = -3899.850862 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.227 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.19970 -40.58474 -39.11021 -36.87110 -36.18965 -35.02046 -34.11980 -32.52915 -31.23364 -30.86456 -28.88692 -27.68725 -27.27191 -25.93446 -25.67383 -24.64191 -23.50882 -22.39466 -21.81445 -21.55259 -20.07792 -18.82837 -18.43566 -17.86892 -17.41229 -17.13966 -16.67884 -16.55298 -16.34084 -15.93440 -15.73563 -15.56019 -15.32414 -15.16181 -14.61871 -14.50577 -14.23696 -13.92641 -13.63000 -13.40644 -13.34780 -13.27949 -12.95912 -12.82478 -12.79175 -12.71586 -12.61752 -12.52163 -12.41109 -12.37569 -12.30848 -11.81370 -11.80089 -11.57166 -11.54711 -11.44142 -11.38876 -11.28890 -11.19825 -10.78136 -10.54954 -10.14089 -9.92220 -8.19993 -6.29938 0.52947 1.01640 1.39349 1.40447 1.52942 1.61844 2.41093 2.44639 2.88608 3.13652 3.26040 3.44763 3.50392 3.66646 3.76314 3.82248 3.91097 4.06217 4.09620 4.16712 4.25491 4.27855 4.31245 4.37784 4.44288 4.46437 4.51113 4.55328 4.59271 4.60022 4.66766 4.71512 4.81969 4.83287 4.87417 4.93462 4.98303 4.98984 5.04213 5.10218 5.14767 5.18222 5.19951 5.27104 5.42215 5.48173 5.51279 5.66153 5.72468 5.84862 5.99552 6.11744 6.25165 6.85749 7.38828 7.56189 8.91732 Molecular weight = 336.23amu Principal moments of inertia in cm(-1) A = 0.013219 B = 0.002734 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.589764 B =10238.736365 C =11368.477436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.401 6.401 3 C 0.061 3.939 4 C 0.113 3.887 5 N -0.457 5.457 6 C 0.202 3.798 7 C -0.025 4.025 8 C -0.084 4.084 9 C 0.028 3.972 10 C -0.542 4.542 11 H 0.054 0.946 12 C 0.003 3.997 13 N -0.929 5.929 14 Si 0.960 3.040 15 H -0.266 1.266 16 H -0.275 1.275 17 H -0.279 1.279 18 N -0.322 5.322 19 N -0.344 5.344 20 C 0.345 3.655 21 N -0.438 5.438 22 C 0.039 3.961 23 C -0.105 4.105 24 C -0.093 4.093 25 H 0.081 0.919 26 C -0.138 4.138 27 C 0.072 3.928 28 H 0.045 0.955 29 C -0.131 4.131 30 H 0.046 0.954 31 H 0.104 0.896 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.103 0.897 36 H 0.121 0.879 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.043 0.957 40 H 0.051 0.949 41 H 0.005 0.995 42 H -0.002 1.002 43 H 0.264 0.736 44 H 0.089 0.911 45 H 0.043 0.957 46 H 0.092 0.908 47 H 0.093 0.907 48 H 0.067 0.933 49 H 0.063 0.937 50 H 0.065 0.935 51 H 0.079 0.921 52 H 0.082 0.918 53 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.575 0.306 28.298 29.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.319 6.319 3 C -0.017 4.017 4 C -0.010 4.010 5 N -0.151 5.151 6 C -0.066 4.066 7 C -0.065 4.065 8 C -0.123 4.123 9 C -0.009 4.009 10 C -0.580 4.580 11 H 0.072 0.928 12 C -0.195 4.195 13 N -0.569 5.569 14 Si 0.785 3.215 15 H -0.190 1.190 16 H -0.201 1.201 17 H -0.204 1.204 18 N -0.162 5.162 19 N -0.187 5.187 20 C -0.012 4.012 21 N -0.165 5.165 22 C -0.087 4.087 23 C -0.143 4.143 24 C -0.112 4.112 25 H 0.099 0.901 26 C -0.195 4.195 27 C -0.035 4.035 28 H 0.064 0.936 29 C -0.188 4.188 30 H 0.065 0.935 31 H 0.123 0.877 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.122 0.878 36 H 0.139 0.861 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.023 0.977 42 H 0.016 0.984 43 H 0.073 0.927 44 H 0.108 0.892 45 H 0.061 0.939 46 H 0.111 0.889 47 H 0.112 0.888 48 H 0.086 0.914 49 H 0.082 0.918 50 H 0.084 0.916 51 H 0.098 0.902 52 H 0.101 0.899 53 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -9.236 0.984 28.145 29.638 hybrid contribution 0.446 -0.485 -1.240 1.404 sum -8.790 0.499 26.905 28.309 Atomic orbital electron populations 1.22989 0.78595 1.04361 1.00970 1.87792 1.22082 1.26443 1.95621 1.22565 0.91920 0.85790 1.01379 1.21701 0.93060 0.79235 1.06987 1.46229 1.46572 1.16579 1.05679 1.25163 1.00402 0.88588 0.92444 1.20177 1.00012 1.02646 0.83649 1.21346 0.95678 0.98393 0.96914 1.18971 0.95814 0.95175 0.90926 1.21660 1.01742 1.37770 0.96862 0.92780 1.25889 0.99176 0.96831 0.97579 1.70075 1.30725 1.48179 1.07968 0.85474 0.79417 0.78290 0.78336 1.19028 1.20091 1.20440 1.73985 1.19043 1.19853 1.03276 1.74443 1.21559 1.18892 1.03791 1.22784 1.00052 0.88738 0.89667 1.61740 1.18399 1.42465 0.93847 1.23410 0.87096 1.01926 0.96286 1.22588 0.99244 1.00132 0.92368 1.22012 0.96508 0.99866 0.92840 0.90063 1.21910 0.98162 1.02128 0.97349 1.22618 0.95858 0.91770 0.93291 0.93649 1.21873 0.92618 1.03503 1.00850 0.93547 0.87746 0.92620 0.91870 0.93005 0.87841 0.86106 0.88547 0.88434 0.93797 0.93032 0.97704 0.98373 0.92714 0.89222 0.93874 0.88936 0.88821 0.91450 0.91819 0.91602 0.90184 0.89914 0.95230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.65 16 2 O -0.40 -8.57 10.70 -148.98 -1.59 -10.16 16 3 C 0.06 1.29 6.26 71.98 0.45 1.74 16 4 C 0.11 2.64 6.23 86.38 0.54 3.18 16 5 N -0.46 -13.24 2.81 -514.85 -1.45 -14.69 16 6 C 0.20 6.93 7.32 137.64 1.01 7.94 16 7 C -0.03 -0.86 5.49 29.85 0.16 -0.70 16 8 C -0.08 -3.51 5.13 30.59 0.16 -3.35 16 9 C 0.03 1.46 4.97 29.84 0.15 1.61 16 10 C -0.54 -30.95 9.11 25.60 0.23 -30.72 16 11 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 12 C 0.00 0.19 5.46 84.65 0.46 0.65 16 13 N -0.93 -55.99 13.29 21.45 0.28 -55.71 16 14 Si 0.96 44.55 29.54 68.60 2.03 46.58 16 15 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 16 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 17 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 18 N -0.32 -12.54 12.18 -49.53 -0.60 -13.14 16 19 N -0.34 -12.36 11.42 -58.01 -0.66 -13.02 16 20 C 0.34 10.13 6.50 260.12 1.69 11.82 16 21 N -0.44 -9.67 4.94 -669.90 -3.31 -12.98 16 22 C 0.04 0.76 6.50 86.65 0.56 1.33 16 23 C -0.11 -1.29 6.61 31.80 0.21 -1.08 16 24 C -0.09 -1.20 3.59 -9.92 -0.04 -1.24 16 25 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 26 C -0.14 -1.18 7.91 71.98 0.57 -0.62 16 27 C 0.07 1.36 3.02 45.06 0.14 1.50 16 28 H 0.05 1.12 7.26 -2.38 -0.02 1.11 16 29 C -0.13 -2.00 8.36 71.98 0.60 -1.40 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.06 0.66 8.14 -2.39 -0.02 0.65 16 33 H 0.06 1.25 7.66 -2.39 -0.02 1.23 16 34 H 0.05 1.14 8.07 -2.38 -0.02 1.12 16 35 H 0.10 2.56 8.02 -2.39 -0.02 2.55 16 36 H 0.12 2.53 8.14 -2.38 -0.02 2.51 16 37 H 0.10 2.92 7.90 -2.39 -0.02 2.90 16 38 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 39 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.00 0.25 8.14 -2.38 -0.02 0.23 16 42 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 43 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 44 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.04 1.02 7.89 -2.38 -0.02 1.00 16 46 H 0.09 0.93 7.86 -2.39 -0.02 0.91 16 47 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.07 0.45 8.14 -2.38 -0.02 0.43 16 49 H 0.06 0.50 6.93 -2.39 -0.02 0.48 16 50 H 0.07 0.56 6.59 -2.39 -0.02 0.55 16 51 H 0.08 1.04 6.58 -2.39 -0.02 1.03 16 52 H 0.08 0.98 6.92 -2.39 -0.02 0.96 16 53 H 0.03 0.55 7.66 -2.39 -0.02 0.53 16 Total: -1.00 -71.42 420.90 3.70 -67.71 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 0.86 Total: 13.08 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: 8.15 Total: -7.68 kcal Atomic # 7 Polarization: -103.79 SS G_CDS: -5.74 Total: -109.53 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: -1.59 Total: -10.16 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -71.42 3.70 -67.71 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001523559191.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.076 kcal (2) G-P(sol) polarization free energy of solvation -71.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds