Wall clock time and date at job start Sat Apr 11 2020 04:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42900 * 113.99466 * 2 1 4 4 C 1.53003 * 109.47141 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47327 * 177.24328 * 4 3 2 6 6 C 1.36737 * 127.13990 * 90.79856 * 5 4 3 7 7 C 1.50699 * 126.34400 * 359.94750 * 6 5 4 8 8 C 1.52996 * 109.47367 * 89.99928 * 7 6 5 9 9 C 1.52997 * 109.47190 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.47316 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00189 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00265 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00356 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 119.99766 * 0.02562 * 12 10 9 15 15 H 1.48505 * 109.47223 * 90.00181 * 14 12 10 16 16 H 1.48504 * 109.47014 * 210.00054 * 14 12 10 17 17 H 1.48502 * 109.47273 * 330.00020 * 14 12 10 18 18 N 1.30299 * 107.30531 * 179.97438 * 6 5 4 19 19 N 1.28521 * 110.05314 * 0.02562 * 18 6 5 20 20 C 1.31224 * 109.86418 * 359.73949 * 19 18 6 21 21 N 1.38582 * 126.47429 * 180.26130 * 20 19 18 22 22 C 1.47441 * 110.99995 * 298.07172 * 21 20 19 23 23 C 1.54318 * 107.22963 * 123.25825 * 22 21 20 24 24 C 1.55142 * 103.02084 * 22.28552 * 23 22 21 25 25 H 1.08998 * 110.99021 * 82.43838 * 24 23 22 26 26 C 1.53001 * 110.98867 * 206.25278 * 24 23 22 27 27 C 1.47848 * 111.00010 * 58.91791 * 21 20 19 28 28 H 1.08995 * 110.37194 * 332.46441 * 27 21 20 29 29 C 1.52996 * 110.37194 * 94.80395 * 27 21 20 30 30 H 1.08996 * 109.47040 * 300.00049 * 1 2 3 31 31 H 1.08999 * 109.47300 * 60.00452 * 1 2 3 32 32 H 1.09007 * 109.46594 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46998 * 299.99779 * 3 2 1 34 34 H 1.08997 * 109.47555 * 60.00148 * 3 2 1 35 35 H 1.09008 * 109.46657 * 297.24258 * 4 3 2 36 36 H 1.08998 * 109.46792 * 57.23720 * 4 3 2 37 37 H 1.09004 * 109.46500 * 209.99978 * 7 6 5 38 38 H 1.08998 * 109.47109 * 329.99005 * 7 6 5 39 39 H 1.09004 * 109.46923 * 299.99206 * 8 7 6 40 40 H 1.08998 * 109.47760 * 59.99476 * 8 7 6 41 41 H 1.08999 * 109.47235 * 300.00081 * 9 8 7 42 42 H 1.09003 * 109.47259 * 59.99639 * 9 8 7 43 43 H 0.97005 * 120.00388 * 179.97438 * 13 12 10 44 44 H 1.08993 * 109.88997 * 242.66604 * 22 21 20 45 45 H 1.08998 * 109.88887 * 3.69355 * 22 21 20 46 46 H 1.09008 * 110.70145 * 140.66848 * 23 22 21 47 47 H 1.09000 * 110.70599 * 263.89875 * 23 22 21 48 48 H 1.08993 * 109.47117 * 58.54156 * 26 24 23 49 49 H 1.08997 * 109.46732 * 178.54765 * 26 24 23 50 50 H 1.09000 * 109.47158 * 298.54765 * 26 24 23 51 51 H 1.09002 * 109.47185 * 58.54721 * 29 27 21 52 52 H 1.09001 * 109.46966 * 178.54298 * 29 27 21 53 53 H 1.08994 * 109.47565 * 298.54441 * 29 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 7 4.1311 2.5216 -0.0671 6 6 4.4852 3.3208 0.9844 7 6 4.3344 2.9911 2.4471 8 6 5.6006 2.2917 2.9454 9 6 5.4478 1.9576 4.4306 10 6 6.6947 1.2680 4.9214 11 1 7.5140 1.0859 4.2418 12 6 6.7891 0.8687 6.2377 13 7 7.8774 0.2674 6.6660 14 14 5.3710 1.1819 7.4126 15 1 4.4420 0.0236 7.3872 16 1 5.8991 1.3627 8.7888 17 1 4.6446 2.4083 6.9961 18 7 4.9765 4.4204 0.4872 19 7 4.9566 4.3708 -0.7969 20 6 4.4524 3.2253 -1.1912 21 7 4.2768 2.8098 -2.5016 22 6 3.3479 3.7024 -3.2189 23 6 4.0940 4.2367 -4.4596 24 6 5.2042 3.1764 -4.6834 25 1 4.8186 2.3173 -5.2324 26 6 6.4088 3.7875 -5.4020 27 6 5.5645 2.7885 -3.2277 28 1 6.2532 3.5172 -2.8002 29 6 6.1764 1.3869 -3.1858 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0278 0.0005 33 1 1.6885 1.8464 -0.8900 34 1 1.6886 1.8464 0.8899 35 1 3.8609 0.6870 0.9129 36 1 3.8534 0.6020 -0.8651 37 1 4.1805 3.9102 3.0126 38 1 3.4772 2.3322 2.5846 39 1 5.7544 1.3726 2.3800 40 1 6.4579 2.9506 2.8080 41 1 5.2941 2.8768 4.9959 42 1 4.5905 1.2987 4.5685 43 1 7.9440 -0.0132 7.5922 44 1 2.4638 3.1455 -3.5291 45 1 3.0566 4.5307 -2.5731 46 1 3.4265 4.2835 -5.3201 47 1 4.5304 5.2145 -4.2554 48 1 6.8013 4.6162 -4.8128 49 1 7.1824 3.0293 -5.5233 50 1 6.1007 4.1523 -6.3819 51 1 5.4821 0.6738 -3.6302 52 1 7.1111 1.3816 -3.7466 53 1 6.3722 1.1066 -2.1508 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001523559194.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:52:43 Heat of formation + Delta-G solvation = 4.994326 kcal Electronic energy + Delta-G solvation = -30318.086859 eV Core-core repulsion = 26418.089973 eV Total energy + Delta-G solvation = -3899.996886 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.227 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.19117 -40.49203 -39.09954 -36.89570 -36.17696 -34.85949 -34.09405 -32.49298 -31.55811 -30.91086 -29.34981 -28.08402 -27.29149 -25.50689 -25.35681 -24.57317 -23.49074 -22.23929 -21.70588 -21.35722 -20.85685 -18.95335 -18.54671 -17.68100 -17.53055 -17.13298 -16.80222 -16.49996 -16.38271 -15.89899 -15.69715 -15.42056 -15.12580 -14.84938 -14.76674 -14.46346 -14.32221 -14.06953 -13.95221 -13.50754 -13.44133 -13.40403 -13.00262 -12.85618 -12.78381 -12.71134 -12.66767 -12.58900 -12.49266 -12.32474 -11.97151 -11.84267 -11.78890 -11.64766 -11.60106 -11.48543 -11.42734 -11.36054 -11.23838 -10.77824 -10.74532 -10.04532 -9.94400 -8.27589 -6.32658 0.54624 1.02586 1.38793 1.41992 1.53771 1.63447 2.38898 2.43142 2.89483 3.08200 3.26207 3.44246 3.51210 3.59617 3.77634 3.83519 3.93144 4.01621 4.11842 4.16668 4.21939 4.26573 4.32412 4.35659 4.44222 4.45648 4.51701 4.54026 4.57761 4.61679 4.62916 4.69700 4.76836 4.84299 4.86923 4.89478 4.95020 4.97674 5.00480 5.01818 5.04632 5.09858 5.19479 5.32083 5.39404 5.43114 5.49808 5.56601 5.60252 5.67535 6.01231 6.14003 6.29118 6.75510 7.31878 7.57734 8.89689 Molecular weight = 336.23amu Principal moments of inertia in cm(-1) A = 0.011759 B = 0.002942 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.655695 B = 9514.583048 C =10784.145183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.403 6.403 3 C 0.064 3.936 4 C 0.111 3.889 5 N -0.458 5.458 6 C 0.200 3.800 7 C -0.027 4.027 8 C -0.083 4.083 9 C -0.008 4.008 10 C -0.535 4.535 11 H 0.024 0.976 12 C 0.000 4.000 13 N -0.955 5.955 14 Si 0.954 3.046 15 H -0.262 1.262 16 H -0.288 1.288 17 H -0.239 1.239 18 N -0.323 5.323 19 N -0.343 5.343 20 C 0.347 3.653 21 N -0.450 5.450 22 C 0.053 3.947 23 C -0.129 4.129 24 C -0.083 4.083 25 H 0.105 0.895 26 C -0.140 4.140 27 C 0.077 3.923 28 H 0.044 0.956 29 C -0.133 4.133 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.103 0.897 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.106 0.894 36 H 0.115 0.885 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.047 0.953 40 H 0.039 0.961 41 H 0.027 0.973 42 H 0.032 0.968 43 H 0.266 0.734 44 H 0.105 0.895 45 H 0.045 0.955 46 H 0.106 0.894 47 H 0.062 0.938 48 H 0.043 0.957 49 H 0.064 0.936 50 H 0.077 0.923 51 H 0.078 0.922 52 H 0.078 0.922 53 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.488 2.862 -26.065 31.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.014 4.014 4 C -0.012 4.012 5 N -0.152 5.152 6 C -0.069 4.069 7 C -0.067 4.067 8 C -0.122 4.122 9 C -0.045 4.045 10 C -0.573 4.573 11 H 0.042 0.958 12 C -0.196 4.196 13 N -0.596 5.596 14 Si 0.777 3.223 15 H -0.187 1.187 16 H -0.214 1.214 17 H -0.162 1.162 18 N -0.163 5.163 19 N -0.186 5.186 20 C -0.010 4.010 21 N -0.177 5.177 22 C -0.073 4.073 23 C -0.167 4.167 24 C -0.103 4.103 25 H 0.123 0.877 26 C -0.198 4.198 27 C -0.030 4.030 28 H 0.063 0.937 29 C -0.190 4.190 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.121 0.879 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.124 0.876 36 H 0.133 0.867 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.045 0.955 42 H 0.050 0.950 43 H 0.075 0.925 44 H 0.123 0.877 45 H 0.064 0.936 46 H 0.125 0.875 47 H 0.081 0.919 48 H 0.062 0.938 49 H 0.083 0.917 50 H 0.095 0.905 51 H 0.097 0.903 52 H 0.097 0.903 53 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -16.932 3.484 -25.979 31.205 hybrid contribution -0.064 -0.309 1.133 1.176 sum -16.996 3.175 -24.846 30.270 Atomic orbital electron populations 1.22986 0.78552 1.04310 1.01039 1.87802 1.22111 1.26553 1.95637 1.22534 0.91622 0.85736 1.01542 1.21707 0.93244 0.79370 1.06840 1.46263 1.46708 1.16588 1.05590 1.25234 0.99801 0.88416 0.93424 1.20253 0.99940 1.03345 0.83148 1.21230 0.95672 0.98550 0.96782 1.19507 0.95471 0.96464 0.93072 1.21486 1.02214 1.37914 0.95670 0.95780 1.26101 0.98945 0.94143 1.00385 1.70090 1.30101 1.42251 1.17186 0.85599 0.79071 0.80544 0.77096 1.18714 1.21419 1.16211 1.73982 1.19768 1.20518 1.01989 1.74475 1.20974 1.18080 1.05097 1.22733 1.00564 0.88660 0.89075 1.60490 1.13183 1.49319 0.94711 1.22935 0.95528 0.94114 0.94755 1.22837 0.97808 0.98404 0.97642 1.22316 0.96212 0.98981 0.92747 0.87682 1.21720 0.96822 1.00588 1.00627 1.22855 0.87720 0.98279 0.94169 0.93739 1.21715 1.01360 0.95018 1.00943 0.93227 0.92774 0.87898 0.92130 0.92343 0.87580 0.86702 0.87549 0.87575 0.93415 0.94201 0.95468 0.94953 0.92534 0.87685 0.93634 0.87541 0.91884 0.93788 0.91725 0.90454 0.90280 0.90330 0.95233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.59 16 2 O -0.40 -7.82 10.70 -148.98 -1.59 -9.42 16 3 C 0.06 1.19 6.26 71.98 0.45 1.64 16 4 C 0.11 2.46 6.27 86.38 0.54 3.00 16 5 N -0.46 -12.70 2.81 -514.84 -1.45 -14.14 16 6 C 0.20 6.45 7.32 137.64 1.01 7.46 16 7 C -0.03 -0.83 5.41 29.85 0.16 -0.67 16 8 C -0.08 -3.26 5.13 30.59 0.16 -3.11 16 9 C -0.01 -0.35 4.04 29.85 0.12 -0.23 16 10 C -0.53 -31.16 9.66 25.60 0.25 -30.91 16 11 H 0.02 1.57 7.99 -2.91 -0.02 1.54 16 12 C 0.00 0.03 5.47 84.65 0.46 0.49 16 13 N -0.96 -60.86 13.96 21.45 0.30 -60.56 16 14 Si 0.95 43.61 27.47 68.60 1.88 45.49 16 15 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 16 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 17 H -0.24 -9.89 6.54 99.48 0.65 -9.24 16 18 N -0.32 -12.13 12.18 -49.54 -0.60 -12.74 16 19 N -0.34 -12.05 11.68 -58.00 -0.68 -12.73 16 20 C 0.35 9.94 6.17 260.11 1.60 11.54 16 21 N -0.45 -9.77 4.86 -672.32 -3.26 -13.03 16 22 C 0.05 0.92 6.83 86.65 0.59 1.51 16 23 C -0.13 -1.70 6.41 31.78 0.20 -1.50 16 24 C -0.08 -1.10 3.05 -9.41 -0.03 -1.13 16 25 H 0.10 1.08 8.06 -2.39 -0.02 1.06 16 26 C -0.14 -1.65 9.30 71.98 0.67 -0.98 16 27 C 0.08 1.55 2.46 45.38 0.11 1.66 16 28 H 0.04 1.18 7.35 -2.39 -0.02 1.16 16 29 C -0.13 -2.44 9.59 71.98 0.69 -1.75 16 30 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.11 2.44 7.83 -2.38 -0.02 2.42 16 36 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.11 3.08 8.14 -2.38 -0.02 3.06 16 38 H 0.11 2.61 7.90 -2.39 -0.02 2.60 16 39 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.03 1.20 7.20 -2.39 -0.02 1.18 16 42 H 0.03 1.35 7.57 -2.39 -0.02 1.33 16 43 H 0.27 15.74 8.31 -92.70 -0.77 14.97 16 44 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.04 0.98 7.47 -2.39 -0.02 0.96 16 46 H 0.11 0.85 8.14 -2.38 -0.02 0.84 16 47 H 0.06 1.01 8.04 -2.39 -0.02 0.99 16 48 H 0.04 0.66 8.10 -2.39 -0.02 0.64 16 49 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 50 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 51 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 52 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 53 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -75.74 424.87 3.63 -72.11 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: 0.79 Total: 16.39 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: 8.24 Total: -11.37 kcal Atomic # 7 Polarization: -107.51 SS G_CDS: -5.69 Total: -113.20 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: -1.59 Total: -9.42 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 1.88 Total: 45.49 kcal Total: -75.74 3.63 -72.11 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001523559194.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.100 kcal (2) G-P(sol) polarization free energy of solvation -75.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds