Wall clock time and date at job start Sat Apr 11 2020 04:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99835 * 2 1 4 4 C 1.52998 * 109.47053 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46968 * 185.00905 * 4 3 2 6 6 C 1.36734 * 127.13714 * 95.36336 * 5 4 3 7 7 C 1.50699 * 126.34970 * 359.97438 * 6 5 4 8 8 C 1.53008 * 109.47311 * 269.71988 * 7 6 5 9 9 C 1.52993 * 109.47208 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.46935 * 179.97438 * 9 8 7 11 11 H 1.08002 * 120.00065 * 0.02562 * 10 9 8 12 12 C 1.37874 * 120.00065 * 179.72490 * 10 9 8 13 13 N 1.31519 * 120.00469 * 180.27566 * 12 10 9 14 14 Si 1.86806 * 119.99898 * 0.28173 * 12 10 9 15 15 H 1.48497 * 109.47390 * 89.99830 * 14 12 10 16 16 H 1.48500 * 109.47153 * 209.99806 * 14 12 10 17 17 H 1.48501 * 109.47023 * 329.99433 * 14 12 10 18 18 N 1.30299 * 107.30581 * 179.73326 * 6 5 4 19 19 N 1.28524 * 110.05202 * 0.25551 * 18 6 5 20 20 C 1.31218 * 109.86302 * 0.02562 * 19 18 6 21 21 N 1.38578 * 126.47635 * 180.02562 * 20 19 18 22 22 C 1.47902 * 111.00168 * 113.18829 * 21 20 19 23 23 C 1.53995 * 107.05663 * 214.15595 * 22 21 20 24 24 C 1.54596 * 105.14257 * 1.22785 * 23 22 21 25 25 H 1.09006 * 110.72247 * 263.60232 * 24 23 22 26 26 C 1.52993 * 110.72819 * 140.49482 * 24 23 22 27 27 C 1.48533 * 111.00000 * 355.79295 * 21 20 19 28 28 H 1.08997 * 110.67007 * 41.28399 * 27 21 20 29 29 C 1.53003 * 110.66590 * 278.15965 * 27 21 20 30 30 H 1.09003 * 109.47355 * 300.00042 * 1 2 3 31 31 H 1.09002 * 109.47097 * 60.00393 * 1 2 3 32 32 H 1.09002 * 109.47297 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47013 * 59.99971 * 3 2 1 34 34 H 1.08999 * 109.47361 * 299.99708 * 3 2 1 35 35 H 1.09003 * 109.47117 * 65.00664 * 4 3 2 36 36 H 1.09005 * 109.47347 * 305.00947 * 4 3 2 37 37 H 1.08994 * 109.47412 * 149.72060 * 7 6 5 38 38 H 1.08998 * 109.47152 * 29.71397 * 7 6 5 39 39 H 1.09008 * 109.46829 * 59.99543 * 8 7 6 40 40 H 1.08996 * 109.46831 * 300.00502 * 8 7 6 41 41 H 1.09002 * 109.46910 * 60.00652 * 9 8 7 42 42 H 1.08998 * 109.47208 * 299.99968 * 9 8 7 43 43 H 0.96994 * 120.00438 * 180.02562 * 13 12 10 44 44 H 1.09000 * 109.91848 * 333.50719 * 22 21 20 45 45 H 1.09001 * 109.91799 * 94.60546 * 22 21 20 46 46 H 1.09000 * 110.31118 * 120.14162 * 23 22 21 47 47 H 1.09002 * 110.31166 * 242.20824 * 23 22 21 48 48 H 1.09004 * 109.47455 * 61.44830 * 26 24 23 49 49 H 1.09004 * 109.47194 * 181.45088 * 26 24 23 50 50 H 1.09005 * 109.47047 * 301.45434 * 26 24 23 51 51 H 1.08996 * 109.47519 * 61.45079 * 29 27 21 52 52 H 1.09003 * 109.47347 * 181.45392 * 29 27 21 53 53 H 1.09003 * 109.46924 * 301.44895 * 29 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1307 2.5178 0.1212 6 6 4.5513 3.1334 1.2674 7 6 4.4897 2.5642 2.6614 8 6 3.1587 2.9485 3.3109 9 6 3.0958 2.3700 4.7258 10 6 1.7851 2.7491 5.3657 11 1 1.0684 3.3429 4.8177 12 6 1.4982 2.3327 6.6484 13 7 0.3521 2.6589 7.2049 14 14 2.7376 1.3052 7.5960 15 1 3.6456 2.2013 8.3560 16 1 2.0205 0.4109 8.5400 17 1 3.5318 0.4865 6.6452 18 7 5.0202 4.3015 0.9304 19 7 4.9202 4.4666 -0.3403 20 6 4.3772 3.4042 -0.8865 21 7 4.1112 3.2151 -2.2333 22 6 4.9592 2.1416 -2.7955 23 6 5.2781 2.5331 -4.2503 24 6 4.5880 3.9003 -4.4612 25 1 3.6133 3.7718 -4.9321 26 6 5.4716 4.8300 -5.2951 27 6 4.4320 4.4361 -3.0159 28 1 5.3638 4.8821 -2.6683 29 6 3.2854 5.4460 -2.9351 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6885 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8637 0.7230 -0.9306 36 1 3.8507 0.5684 0.8426 37 1 5.3121 2.9645 3.2541 38 1 4.5707 1.4782 2.6143 39 1 2.3361 2.5481 2.7181 40 1 3.0776 4.0344 3.3579 41 1 3.9183 2.7701 5.3188 42 1 3.1767 1.2841 4.6783 43 1 0.1504 2.3663 8.1073 44 1 5.8826 2.0591 -2.2223 45 1 4.4219 1.1934 -2.7722 46 1 6.3550 2.6276 -4.3893 47 1 4.8720 1.7923 -4.9392 48 1 5.6381 4.3885 -6.2777 49 1 4.9777 5.7950 -5.4093 50 1 6.4288 4.9690 -4.7924 51 1 3.1382 5.7465 -1.8978 52 1 3.5297 6.3220 -3.5360 53 1 2.3713 4.9889 -3.3142 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001523559197.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:52:45 Heat of formation + Delta-G solvation = 6.203405 kcal Electronic energy + Delta-G solvation = -30501.150771 eV Core-core repulsion = 26601.206314 eV Total energy + Delta-G solvation = -3899.944456 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.227 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.17378 -40.50966 -39.12325 -36.89454 -36.24898 -34.88222 -34.07692 -32.57061 -31.52499 -30.92289 -29.30204 -28.10613 -27.33286 -25.58078 -25.26893 -24.75784 -23.25611 -22.40428 -21.77224 -21.39703 -20.62904 -18.93343 -18.40019 -17.91448 -17.33394 -17.14483 -16.83874 -16.60219 -16.38213 -15.86340 -15.79092 -15.64785 -15.18984 -14.88783 -14.80621 -14.44261 -14.30812 -13.97822 -13.89095 -13.48798 -13.47367 -13.32302 -13.04143 -12.90665 -12.80973 -12.75160 -12.71399 -12.52978 -12.48629 -12.35277 -11.90891 -11.83547 -11.79114 -11.66104 -11.57540 -11.45873 -11.36560 -11.35641 -11.23889 -10.82924 -10.74952 -10.68669 -9.41804 -8.28275 -6.33262 0.60175 1.03948 1.39263 1.40819 1.52699 1.69496 2.38175 2.45230 2.80882 3.07525 3.28801 3.39905 3.45541 3.54134 3.75971 3.87670 3.92506 3.99457 4.04804 4.13043 4.21029 4.22224 4.28055 4.34598 4.43329 4.44703 4.47462 4.54156 4.57176 4.57795 4.62223 4.67860 4.79434 4.80569 4.83241 4.91393 4.94924 4.97824 5.01187 5.02742 5.06620 5.14115 5.19966 5.32238 5.37953 5.41074 5.47811 5.56291 5.62799 5.66891 5.94293 6.09371 6.28177 6.74431 7.31216 7.64979 8.88869 Molecular weight = 336.23amu Principal moments of inertia in cm(-1) A = 0.015328 B = 0.002832 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.317355 B = 9885.971714 C =10728.225763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.395 6.395 3 C 0.055 3.945 4 C 0.114 3.886 5 N -0.472 5.472 6 C 0.195 3.805 7 C -0.027 4.027 8 C -0.082 4.082 9 C -0.008 4.008 10 C -0.534 4.534 11 H 0.023 0.977 12 C 0.001 3.999 13 N -0.955 5.955 14 Si 0.954 3.046 15 H -0.268 1.268 16 H -0.286 1.286 17 H -0.236 1.236 18 N -0.321 5.321 19 N -0.351 5.351 20 C 0.355 3.645 21 N -0.436 5.436 22 C 0.034 3.966 23 C -0.118 4.118 24 C -0.084 4.084 25 H 0.096 0.904 26 C -0.140 4.140 27 C 0.081 3.919 28 H 0.060 0.940 29 C -0.131 4.131 30 H 0.033 0.967 31 H 0.056 0.944 32 H 0.110 0.890 33 H 0.037 0.963 34 H 0.062 0.938 35 H 0.124 0.876 36 H 0.118 0.882 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.044 0.956 40 H 0.038 0.962 41 H 0.026 0.974 42 H 0.033 0.967 43 H 0.266 0.734 44 H 0.042 0.958 45 H 0.103 0.897 46 H 0.081 0.919 47 H 0.101 0.899 48 H 0.076 0.924 49 H 0.061 0.939 50 H 0.050 0.950 51 H 0.028 0.972 52 H 0.081 0.919 53 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.989 -6.285 -28.723 31.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.313 6.313 3 C -0.023 4.023 4 C -0.008 4.008 5 N -0.168 5.168 6 C -0.074 4.074 7 C -0.067 4.067 8 C -0.121 4.121 9 C -0.045 4.045 10 C -0.572 4.572 11 H 0.042 0.958 12 C -0.195 4.195 13 N -0.595 5.595 14 Si 0.776 3.224 15 H -0.193 1.193 16 H -0.212 1.212 17 H -0.159 1.159 18 N -0.160 5.160 19 N -0.194 5.194 20 C -0.003 4.003 21 N -0.161 5.161 22 C -0.092 4.092 23 C -0.155 4.155 24 C -0.103 4.103 25 H 0.114 0.886 26 C -0.197 4.197 27 C -0.026 4.026 28 H 0.078 0.922 29 C -0.189 4.189 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.128 0.872 33 H 0.055 0.945 34 H 0.080 0.920 35 H 0.142 0.858 36 H 0.136 0.864 37 H 0.124 0.876 38 H 0.125 0.875 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.044 0.956 42 H 0.051 0.949 43 H 0.075 0.925 44 H 0.061 0.939 45 H 0.121 0.879 46 H 0.100 0.900 47 H 0.119 0.881 48 H 0.095 0.905 49 H 0.080 0.920 50 H 0.069 0.931 51 H 0.047 0.953 52 H 0.100 0.900 53 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.074 -5.256 -28.521 30.701 hybrid contribution -0.443 -0.605 1.201 1.416 sum 9.631 -5.861 -27.320 29.555 Atomic orbital electron populations 1.22956 0.78932 1.04404 1.00530 1.87731 1.21713 1.26310 1.95592 1.22615 0.93008 0.85722 1.00914 1.21777 0.92174 0.79560 1.07331 1.46136 1.48177 1.16377 1.06093 1.25151 1.00034 0.91134 0.91036 1.20236 0.99976 1.01661 0.84790 1.21245 0.94840 0.99667 0.96368 1.19507 0.95021 0.96905 0.93076 1.21464 1.02860 1.33071 0.99789 0.95847 1.26086 0.97444 0.97285 0.98681 1.70085 1.25452 1.48329 1.15677 0.85611 0.78958 0.79119 0.78696 1.19337 1.21187 1.15853 1.73941 1.21070 1.15002 1.05937 1.74469 1.20868 1.22422 1.01662 1.23014 0.98727 0.88078 0.90443 1.61714 1.50441 1.09723 0.94235 1.23134 0.94863 0.94542 0.96688 1.22507 1.01774 0.97519 0.93746 1.22141 1.00942 0.94802 0.92452 0.88613 1.21762 0.98794 0.99225 0.99942 1.22905 0.98533 0.88406 0.92768 0.92177 1.21626 0.97797 0.98498 1.00964 0.94798 0.92578 0.87214 0.94498 0.91955 0.85809 0.86427 0.87591 0.87487 0.93698 0.94328 0.95605 0.94880 0.92537 0.93907 0.87873 0.90025 0.88092 0.90471 0.91957 0.93063 0.95308 0.89978 0.91523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 11.01 113.37 1.25 1.80 16 2 O -0.40 -9.36 10.70 -148.98 -1.59 -10.96 16 3 C 0.06 1.34 6.26 71.98 0.45 1.79 16 4 C 0.11 2.40 6.35 86.38 0.55 2.95 16 5 N -0.47 -12.92 2.81 -514.85 -1.45 -14.36 16 6 C 0.20 6.35 7.32 137.64 1.01 7.36 16 7 C -0.03 -0.83 5.58 29.85 0.17 -0.67 16 8 C -0.08 -3.25 5.13 30.59 0.16 -3.10 16 9 C -0.01 -0.35 4.04 29.85 0.12 -0.23 16 10 C -0.53 -31.13 9.66 25.60 0.25 -30.88 16 11 H 0.02 1.52 7.99 -2.91 -0.02 1.50 16 12 C 0.00 0.08 5.47 84.65 0.46 0.54 16 13 N -0.95 -60.67 13.96 21.45 0.30 -60.37 16 14 Si 0.95 43.71 27.47 68.60 1.88 45.59 16 15 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 16 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 17 H -0.24 -9.63 6.54 99.48 0.65 -8.98 16 18 N -0.32 -12.16 12.18 -49.54 -0.60 -12.77 16 19 N -0.35 -12.33 10.71 -58.00 -0.62 -12.95 16 20 C 0.35 10.11 6.60 260.11 1.72 11.82 16 21 N -0.44 -9.32 5.02 -670.04 -3.36 -12.68 16 22 C 0.03 0.51 5.85 86.45 0.51 1.02 16 23 C -0.12 -1.17 6.51 31.47 0.20 -0.96 16 24 C -0.08 -0.99 3.09 -9.59 -0.03 -1.02 16 25 H 0.10 1.01 8.04 -2.38 -0.02 0.99 16 26 C -0.14 -1.31 9.16 71.98 0.66 -0.65 16 27 C 0.08 1.57 2.02 45.26 0.09 1.66 16 28 H 0.06 1.43 7.33 -2.39 -0.02 1.42 16 29 C -0.13 -2.67 9.46 71.98 0.68 -1.98 16 30 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.04 1.10 6.87 -2.39 -0.02 1.08 16 34 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.12 1.98 6.11 -2.39 -0.01 1.96 16 36 H 0.12 2.28 7.10 -2.38 -0.02 2.26 16 37 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 38 H 0.11 2.65 7.17 -2.39 -0.02 2.64 16 39 H 0.04 1.80 6.87 -2.38 -0.02 1.79 16 40 H 0.04 1.68 8.14 -2.39 -0.02 1.67 16 41 H 0.03 1.13 7.58 -2.39 -0.02 1.11 16 42 H 0.03 1.41 7.19 -2.39 -0.02 1.39 16 43 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 44 H 0.04 0.75 7.75 -2.39 -0.02 0.73 16 45 H 0.10 1.21 6.93 -2.39 -0.02 1.20 16 46 H 0.08 0.73 7.85 -2.39 -0.02 0.72 16 47 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 48 H 0.08 0.49 8.14 -2.38 -0.02 0.47 16 49 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 50 H 0.05 0.56 8.13 -2.38 -0.02 0.54 16 51 H 0.03 0.77 7.78 -2.39 -0.02 0.76 16 52 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 53 H 0.07 1.23 8.13 -2.39 -0.02 1.21 16 Total: -1.00 -76.31 415.67 3.61 -72.70 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 0.81 Total: 16.34 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: 8.24 Total: -10.55 kcal Atomic # 7 Polarization: -107.40 SS G_CDS: -5.73 Total: -113.13 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: -1.59 Total: -10.96 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.88 Total: 45.59 kcal Total: -76.31 3.61 -72.70 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001523559197.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.904 kcal (2) G-P(sol) polarization free energy of solvation -76.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds