Wall clock time and date at job start Sat Apr 11 2020 04:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42899 * 114.00011 * 2 1 4 4 C 1.53004 * 109.47190 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47252 * 180.02562 * 4 3 2 6 6 C 1.52993 * 109.47322 * 180.02562 * 5 4 3 7 7 N 1.46497 * 109.47315 * 180.02562 * 6 5 4 8 8 C 1.36736 * 127.13304 * 275.42046 * 7 6 5 9 9 C 1.50697 * 126.34970 * 359.97438 * 8 7 6 10 10 C 1.52999 * 109.47135 * 270.02089 * 9 8 7 11 11 C 1.53002 * 117.49672 * 243.74649 * 10 9 8 12 12 C 1.53006 * 117.50114 * 175.08893 * 10 9 8 13 13 N 1.30293 * 107.30420 * 180.02562 * 8 7 6 14 14 N 1.28529 * 110.05488 * 359.97438 * 13 8 7 15 15 C 1.31216 * 109.85839 * 0.02562 * 14 13 8 16 16 N 1.38586 * 126.46929 * 179.73975 * 15 14 13 17 17 C 1.46896 * 111.00131 * 293.91173 * 16 15 14 18 18 C 1.46898 * 110.99999 * 57.86747 * 16 15 14 19 19 H 1.08998 * 109.47048 * 299.99600 * 18 16 15 20 20 C 1.52998 * 109.47197 * 59.99949 * 18 16 15 21 21 C 1.50700 * 109.46920 * 179.97438 * 18 16 15 22 22 H 1.07999 * 119.99992 * 359.97438 * 21 18 16 23 23 C 1.37884 * 120.00195 * 179.97438 * 21 18 16 24 24 N 1.31507 * 119.99786 * 180.02562 * 23 21 18 25 25 Si 1.86791 * 119.99638 * 0.02562 * 23 21 18 26 26 H 1.48498 * 109.47362 * 90.00125 * 25 23 21 27 27 H 1.48507 * 109.47360 * 209.99946 * 25 23 21 28 28 H 1.48503 * 109.47367 * 330.00120 * 25 23 21 29 29 H 1.08994 * 109.47457 * 299.99833 * 1 2 3 30 30 H 1.09003 * 109.47272 * 59.99897 * 1 2 3 31 31 H 1.09000 * 109.47347 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47390 * 60.00143 * 3 2 1 33 33 H 1.09004 * 109.47061 * 299.99886 * 3 2 1 34 34 H 1.08998 * 109.46898 * 59.99768 * 4 3 2 35 35 H 1.08996 * 109.47005 * 300.00230 * 4 3 2 36 36 H 1.09004 * 109.47290 * 59.99591 * 5 4 3 37 37 H 1.09004 * 109.47018 * 299.99824 * 5 4 3 38 38 H 1.09004 * 109.47553 * 59.99408 * 6 5 4 39 39 H 1.09008 * 109.47089 * 299.99914 * 6 5 4 40 40 H 1.08999 * 109.47204 * 30.01719 * 9 8 7 41 41 H 1.09003 * 109.47184 * 150.01855 * 9 8 7 42 42 H 1.09001 * 115.55285 * 29.41253 * 10 9 8 43 43 H 1.08997 * 117.49922 * 359.97438 * 11 10 9 44 44 H 1.09005 * 117.49884 * 145.02203 * 11 10 9 45 45 H 1.08996 * 117.50107 * 214.98174 * 12 10 9 46 46 H 1.09005 * 117.49386 * 359.97317 * 12 10 9 47 47 H 1.08999 * 109.47110 * 65.62576 * 17 16 15 48 48 H 1.08996 * 109.47406 * 185.63410 * 17 16 15 49 49 H 1.09008 * 109.46703 * 305.62978 * 17 16 15 50 50 H 1.09003 * 109.46932 * 179.97438 * 20 18 16 51 51 H 1.09002 * 109.47111 * 299.99585 * 20 18 16 52 52 H 1.08998 * 109.47406 * 59.99871 * 20 18 16 53 53 H 0.97003 * 119.99909 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1577 2.5823 0.0000 6 6 5.6829 2.4616 -0.0013 7 7 6.2788 3.7999 -0.0001 8 6 6.5196 4.5972 -1.0845 9 6 6.2201 4.2629 -2.5230 10 6 7.4306 3.5658 -3.1473 11 6 8.1396 4.2792 -4.3003 12 6 7.2838 3.0405 -4.5769 13 7 7.0571 5.6991 -0.6435 14 7 7.1709 5.6529 0.6359 15 6 6.7087 4.5092 1.0834 16 7 6.6698 4.0974 2.4061 17 6 8.0258 3.9121 2.9398 18 6 5.9045 5.0429 3.2296 19 1 6.3724 6.0263 3.1834 20 6 4.4713 5.1347 2.7020 21 6 5.8837 4.5626 4.6578 22 1 6.3882 3.6463 4.9267 23 6 5.2207 5.2928 5.6212 24 7 5.2030 4.8738 6.8677 25 14 4.3475 6.8772 5.1559 26 1 2.9447 6.5754 4.7734 27 1 4.3557 7.8058 6.3148 28 1 5.0479 7.5101 4.0095 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8566 0.6439 -0.8908 35 1 3.8574 0.6436 0.8891 36 1 3.8364 3.1228 0.8904 37 1 3.8358 3.1238 -0.8896 38 1 6.0039 1.9213 -0.8919 39 1 6.0052 1.9199 0.8881 40 1 5.3555 3.6008 -2.5698 41 1 6.0057 5.1798 -3.0721 42 1 8.0463 2.9868 -2.4591 43 1 7.7434 5.2448 -4.6143 44 1 9.2218 4.1690 -4.3709 45 1 7.8031 2.1160 -4.8292 46 1 6.3246 3.1912 -5.0724 47 1 8.5366 4.8743 2.9761 48 1 7.9667 3.4940 3.9447 49 1 8.5802 3.2305 2.2947 50 1 3.9033 5.8360 3.3133 51 1 4.4860 5.4819 1.6689 52 1 4.0034 4.1513 2.7482 53 1 4.7368 5.3878 7.5455 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001555472658.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:53:11 Heat of formation + Delta-G solvation = 44.582157 kcal Electronic energy + Delta-G solvation = -30611.651457 eV Core-core repulsion = 26713.371228 eV Total energy + Delta-G solvation = -3898.280229 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.227 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.01073 -39.08408 -39.00602 -38.34365 -37.11039 -34.92343 -34.22091 -32.68297 -31.91485 -29.76951 -28.73049 -27.35534 -27.16235 -26.22695 -24.75305 -23.56857 -23.16022 -22.54686 -22.06553 -21.21426 -21.10312 -18.97436 -17.90645 -17.73938 -17.29010 -17.22668 -16.88176 -16.69657 -16.54759 -15.88043 -15.78397 -15.65153 -15.28571 -14.96561 -14.87936 -14.45087 -14.17752 -13.97629 -13.85096 -13.81756 -13.63506 -13.13591 -12.97952 -12.77650 -12.62725 -12.60637 -12.56047 -12.48499 -12.38152 -12.28527 -12.19418 -11.97383 -11.73948 -11.61184 -11.53510 -11.28506 -11.24242 -11.00384 -10.81602 -10.80332 -10.61852 -9.96401 -9.64082 -8.34583 -6.37868 0.73849 1.21738 1.30795 1.31766 1.39694 1.80681 2.25072 2.73708 2.88058 2.95081 3.01715 3.32494 3.64995 3.81949 3.87642 3.94832 3.99763 4.08678 4.15558 4.18694 4.29935 4.32090 4.36647 4.40069 4.41807 4.44867 4.48397 4.52019 4.54099 4.56182 4.63922 4.65797 4.71380 4.76165 4.83486 4.85684 4.88135 4.91596 4.99917 5.01728 5.05379 5.10499 5.18865 5.25834 5.29313 5.31543 5.34473 5.44794 5.69992 5.82883 6.16904 6.22137 6.56894 6.67040 7.26068 7.75584 8.80449 Molecular weight = 336.23amu Principal moments of inertia in cm(-1) A = 0.007111 B = 0.004491 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3936.859049 B = 6233.192257 C = 9216.514263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.414 6.414 3 C 0.059 3.941 4 C -0.104 4.104 5 C -0.125 4.125 6 C 0.110 3.890 7 N -0.458 5.458 8 C 0.192 3.808 9 C 0.007 3.993 10 C -0.162 4.162 11 C -0.185 4.185 12 C -0.151 4.151 13 N -0.328 5.328 14 N -0.361 5.361 15 C 0.357 3.643 16 N -0.456 5.456 17 C 0.055 3.945 18 C 0.205 3.795 19 H -0.008 1.008 20 C -0.131 4.131 21 C -0.507 4.507 22 H 0.062 0.938 23 C 0.033 3.967 24 N -0.933 5.933 25 Si 0.929 3.071 26 H -0.261 1.261 27 H -0.291 1.291 28 H -0.269 1.269 29 H 0.041 0.959 30 H 0.053 0.947 31 H 0.098 0.902 32 H 0.040 0.960 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.066 0.934 36 H 0.052 0.948 37 H 0.084 0.916 38 H 0.127 0.873 39 H 0.096 0.904 40 H 0.114 0.886 41 H 0.104 0.896 42 H 0.090 0.910 43 H 0.099 0.901 44 H 0.090 0.910 45 H 0.104 0.896 46 H 0.113 0.887 47 H 0.020 0.980 48 H 0.083 0.917 49 H 0.073 0.927 50 H 0.040 0.960 51 H 0.031 0.969 52 H 0.068 0.932 53 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.755 -9.882 -24.283 26.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.334 6.334 3 C -0.018 4.018 4 C -0.142 4.142 5 C -0.164 4.164 6 C -0.011 4.011 7 N -0.151 5.151 8 C -0.077 4.077 9 C -0.032 4.032 10 C -0.181 4.181 11 C -0.222 4.222 12 C -0.188 4.188 13 N -0.168 5.168 14 N -0.204 5.204 15 C -0.001 4.001 16 N -0.182 5.182 17 C -0.093 4.093 18 C 0.098 3.902 19 H 0.009 0.991 20 C -0.188 4.188 21 C -0.546 4.546 22 H 0.080 0.920 23 C -0.167 4.167 24 N -0.572 5.572 25 Si 0.757 3.243 26 H -0.187 1.187 27 H -0.219 1.219 28 H -0.194 1.194 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.116 0.884 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.113 0.887 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.102 0.898 38 H 0.145 0.855 39 H 0.115 0.885 40 H 0.132 0.868 41 H 0.123 0.877 42 H 0.108 0.892 43 H 0.117 0.883 44 H 0.109 0.891 45 H 0.123 0.877 46 H 0.131 0.869 47 H 0.039 0.961 48 H 0.102 0.898 49 H 0.092 0.908 50 H 0.058 0.942 51 H 0.050 0.950 52 H 0.087 0.913 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.335 -9.106 -24.060 26.088 hybrid contribution -0.605 0.785 0.970 1.386 sum -4.939 -8.321 -23.090 25.036 Atomic orbital electron populations 1.22911 0.79719 1.03816 1.00655 1.87812 1.21287 1.28722 1.95585 1.22571 0.94229 0.84366 1.00628 1.21283 0.92878 0.95738 1.04266 1.21788 0.93150 0.98212 1.03216 1.22119 0.93737 0.78908 1.06378 1.46533 1.46072 1.17065 1.05387 1.25348 1.01112 0.88368 0.92862 1.19788 0.98403 1.02651 0.82353 1.22035 0.99647 1.04496 0.91926 1.23129 0.99219 0.97731 1.02091 1.23099 1.02401 0.97879 0.95440 1.73883 1.19143 1.20816 1.02972 1.74578 1.22803 1.18564 1.04439 1.22582 0.99199 0.88747 0.89544 1.58891 1.16787 1.47380 0.95168 1.22207 0.85795 1.00000 1.01275 1.19498 0.90338 0.89034 0.91369 0.99057 1.22007 0.97835 1.01329 0.97669 1.21012 1.33762 1.09426 0.90359 0.91953 1.25446 0.96672 0.99871 0.94683 1.69955 1.44492 1.40679 1.02122 0.86155 0.80064 0.80803 0.77254 1.18697 1.21872 1.19430 0.94076 0.92816 0.88388 0.94199 0.91769 0.88743 0.91517 0.92930 0.89783 0.85488 0.88529 0.86756 0.87750 0.89202 0.88252 0.89142 0.87712 0.86868 0.96097 0.89826 0.90787 0.94195 0.95038 0.91332 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.62 16 2 O -0.41 -8.57 10.70 -148.98 -1.59 -10.17 16 3 C 0.06 1.07 5.94 71.98 0.43 1.50 16 4 C -0.10 -1.74 5.58 30.60 0.17 -1.57 16 5 C -0.13 -2.42 5.54 30.59 0.17 -2.25 16 6 C 0.11 2.28 5.85 86.38 0.51 2.79 16 7 N -0.46 -13.44 2.81 -514.86 -1.45 -14.88 16 8 C 0.19 5.44 7.28 137.64 1.00 6.44 16 9 C 0.01 0.13 5.81 29.85 0.17 0.30 16 10 C -0.16 -2.49 5.72 -10.79 -0.06 -2.55 16 11 C -0.18 -2.65 10.18 30.62 0.31 -2.34 16 12 C -0.15 -1.53 10.26 30.62 0.31 -1.21 16 13 N -0.33 -12.50 12.18 -49.54 -0.60 -13.11 16 14 N -0.36 -15.73 12.10 -58.00 -0.70 -16.43 16 15 C 0.36 13.90 5.04 260.11 1.31 15.21 16 16 N -0.46 -19.19 4.62 -711.01 -3.29 -22.47 16 17 C 0.05 2.18 9.15 127.69 1.17 3.35 16 18 C 0.20 9.97 1.58 44.17 0.07 10.04 16 19 H -0.01 -0.45 7.12 -2.39 -0.02 -0.46 16 20 C -0.13 -5.82 8.29 71.98 0.60 -5.22 16 21 C -0.51 -28.05 8.52 25.60 0.22 -27.83 16 22 H 0.06 3.69 6.64 -2.91 -0.02 3.67 16 23 C 0.03 1.86 5.45 84.66 0.46 2.32 16 24 N -0.93 -56.34 13.96 21.45 0.30 -56.04 16 25 Si 0.93 45.55 24.37 68.60 1.67 47.22 16 26 H -0.26 -12.00 6.87 99.48 0.68 -11.32 16 27 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 28 H -0.27 -13.33 6.53 99.48 0.65 -12.68 16 29 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 34 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.05 1.37 6.93 -2.39 -0.02 1.36 16 37 H 0.08 1.34 7.82 -2.38 -0.02 1.32 16 38 H 0.13 1.69 8.07 -2.39 -0.02 1.67 16 39 H 0.10 2.26 8.10 -2.38 -0.02 2.24 16 40 H 0.11 1.28 7.65 -2.39 -0.02 1.27 16 41 H 0.10 1.70 7.88 -2.39 -0.02 1.68 16 42 H 0.09 1.64 8.07 -2.39 -0.02 1.62 16 43 H 0.10 1.39 8.03 -2.39 -0.02 1.37 16 44 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 45 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.11 0.80 8.14 -2.38 -0.02 0.78 16 47 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 48 H 0.08 3.51 6.30 -2.39 -0.02 3.49 16 49 H 0.07 2.49 8.11 -2.38 -0.02 2.47 16 50 H 0.04 1.83 3.27 -2.39 -0.01 1.82 16 51 H 0.03 1.32 7.22 -2.39 -0.02 1.30 16 52 H 0.07 2.88 7.21 -2.39 -0.02 2.86 16 53 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -73.38 418.74 3.22 -70.16 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: 0.79 Total: 15.13 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: 8.09 Total: 0.59 kcal Atomic # 7 Polarization: -117.20 SS G_CDS: -5.74 Total: -122.94 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: -1.59 Total: -10.17 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.67 Total: 47.22 kcal Total: -73.38 3.22 -70.16 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001555472658.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.745 kcal (2) G-P(sol) polarization free energy of solvation -73.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds