Wall clock time and date at job start Sat Apr 11 2020 04:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47373 * 2 1 4 4 N 1.46504 * 109.47415 * 184.75684 * 3 2 1 5 5 N 1.28447 * 125.18687 * 264.15868 * 4 3 2 6 6 C 1.30856 * 110.92474 * 179.97438 * 5 4 3 7 7 C 1.39675 * 107.86436 * 359.77241 * 6 5 4 8 8 C 1.36593 * 125.19252 * 84.13276 * 4 3 2 9 9 C 1.47161 * 126.88351 * 359.97438 * 8 4 3 10 10 O 1.21623 * 120.00230 * 7.14250 * 9 8 4 11 11 N 1.34785 * 120.00027 * 187.13963 * 9 8 4 12 12 C 1.46501 * 119.99563 * 5.49122 * 11 9 8 13 13 C 1.46498 * 120.00183 * 185.49164 * 11 9 8 14 14 C 1.52992 * 109.47181 * 270.00195 * 13 11 9 15 15 C 1.52999 * 109.47241 * 180.02562 * 14 13 11 16 16 H 1.08997 * 109.47457 * 54.99483 * 15 14 13 17 17 N 1.46502 * 109.46867 * 294.99600 * 15 14 13 18 18 C 1.36941 * 119.99973 * 155.00300 * 17 15 14 19 19 H 1.08002 * 119.99739 * 359.97438 * 18 17 15 20 20 C 1.38808 * 119.99819 * 180.02562 * 18 17 15 21 21 N 1.31614 * 120.00304 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99710 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46752 * 59.99696 * 22 20 18 24 24 H 1.48502 * 109.47187 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47331 * 300.00017 * 22 20 18 26 26 C 1.53003 * 109.47279 * 174.99918 * 15 14 13 27 27 C 1.52999 * 109.47279 * 179.97438 * 26 15 14 28 28 C 1.52997 * 109.46775 * 299.99788 * 26 15 14 29 29 H 1.08997 * 109.47212 * 300.00426 * 1 2 3 30 30 H 1.08998 * 109.46803 * 60.00635 * 1 2 3 31 31 H 1.09002 * 109.47211 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47493 * 239.99191 * 2 1 3 33 33 H 1.09009 * 109.46601 * 119.99800 * 2 1 3 34 34 H 1.08997 * 109.47857 * 64.74714 * 3 2 1 35 35 H 1.09003 * 109.47148 * 304.74963 * 3 2 1 36 36 H 1.08001 * 126.06965 * 180.02562 * 6 5 4 37 37 H 1.08002 * 127.32152 * 180.26462 * 7 6 5 38 38 H 1.09005 * 109.47073 * 275.73052 * 12 11 9 39 39 H 1.08996 * 109.47083 * 35.73436 * 12 11 9 40 40 H 1.08999 * 109.46752 * 155.73590 * 12 11 9 41 41 H 1.08994 * 109.46995 * 149.99621 * 13 11 9 42 42 H 1.09008 * 109.46995 * 29.99943 * 13 11 9 43 43 H 1.09004 * 109.47749 * 59.99778 * 14 13 11 44 44 H 1.09008 * 109.46949 * 299.99775 * 14 13 11 45 45 H 0.96997 * 119.99844 * 335.00182 * 17 15 14 46 46 H 0.96999 * 120.00212 * 179.97438 * 21 20 18 47 47 H 1.08998 * 109.46923 * 59.99874 * 26 15 14 48 48 H 1.08997 * 109.47457 * 59.99564 * 27 26 15 49 49 H 1.09000 * 109.47331 * 180.02562 * 27 26 15 50 50 H 1.09009 * 109.46612 * 299.99811 * 27 26 15 51 51 H 1.09001 * 109.47565 * 60.00275 * 28 26 15 52 52 H 1.09005 * 109.47154 * 179.97438 * 28 26 15 53 53 H 1.08998 * 109.47464 * 299.99754 * 28 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5006 1.4440 -0.1145 5 7 4.3202 1.5227 0.8713 6 6 5.5595 1.4996 0.4516 7 6 5.5384 1.3906 -0.9407 8 6 4.1984 1.3615 -1.2858 9 6 3.6379 1.2559 -2.6424 10 8 2.4390 1.3655 -2.8153 11 7 4.4531 1.0378 -3.6934 12 6 5.8795 0.7860 -3.4740 13 6 3.9128 1.0524 -5.0550 14 6 3.4611 -0.3579 -5.4396 15 6 2.8974 -0.3427 -6.8619 16 1 3.6385 0.0770 -7.5421 17 7 1.6831 0.4762 -6.8972 18 6 1.2866 1.0626 -8.0694 19 1 1.8693 0.9217 -8.9678 20 6 0.1364 1.8389 -8.1026 21 7 -0.5734 2.0110 -7.0077 22 14 -0.4042 2.6395 -9.7016 23 1 -0.6503 1.5894 -10.7224 24 1 -1.6535 3.4089 -9.4724 25 1 0.6612 3.5560 -10.1812 26 6 2.5613 -1.7719 -7.2926 27 6 1.9970 -1.7567 -8.7146 28 6 3.8294 -2.6271 -7.2557 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8934 -0.5140 -0.8899 33 1 1.8932 -0.5139 0.8901 34 1 1.7479 1.9312 0.9294 35 1 1.6089 1.9802 -0.8444 36 1 6.4420 1.5512 1.0721 37 1 6.3873 1.3412 -1.6065 38 1 6.4061 1.7360 -3.3816 39 1 6.0100 0.2079 -2.5592 40 1 6.2838 0.2271 -4.3179 41 1 4.6837 1.3888 -5.7482 42 1 3.0615 1.7317 -5.1008 43 1 2.6901 -0.6943 -4.7464 44 1 4.3124 -1.0372 -5.3938 45 1 1.1601 0.6030 -6.0902 46 1 -1.3770 2.5538 -7.0309 47 1 1.8202 -2.1915 -6.6124 48 1 2.7378 -1.3369 -9.3951 49 1 1.7572 -2.7748 -9.0213 50 1 1.0934 -1.1475 -8.7404 51 1 4.2311 -2.6380 -6.2424 52 1 3.5900 -3.6454 -7.5621 53 1 4.5706 -2.2075 -7.9359 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570775495.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:53:22 Heat of formation + Delta-G solvation = 36.260162 kcal Electronic energy + Delta-G solvation = -30681.039957 eV Core-core repulsion = 26782.398859 eV Total energy + Delta-G solvation = -3898.641097 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.227 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.57862 -40.68088 -38.84395 -37.09514 -36.14549 -34.89167 -33.43354 -32.48450 -32.05041 -30.89010 -28.29298 -27.76348 -27.33730 -26.88444 -25.06764 -23.58857 -23.01123 -22.86571 -21.84655 -20.70181 -20.37179 -19.09633 -18.29997 -17.55612 -17.10302 -16.84220 -16.70228 -16.24551 -16.08193 -15.72410 -15.42872 -15.21611 -15.10724 -15.01840 -14.62315 -14.30571 -14.15575 -14.07253 -13.93386 -13.52251 -13.23588 -13.05967 -12.99711 -12.96025 -12.80439 -12.71230 -12.63832 -12.47868 -12.39941 -12.19217 -12.02075 -11.88119 -11.74558 -11.67648 -11.52670 -11.38576 -11.16639 -11.00686 -10.77645 -10.26110 -9.97321 -9.65028 -8.87164 -7.83374 -5.09873 0.25082 1.33657 1.47128 1.49384 1.55011 1.69267 2.08649 2.16807 2.61259 3.38765 3.48310 3.53509 3.76826 3.94098 3.97778 3.99559 4.11236 4.18729 4.22255 4.27597 4.31506 4.38826 4.46603 4.48762 4.52164 4.62682 4.65865 4.69323 4.73302 4.78459 4.82484 4.83381 4.95096 4.95496 4.97496 5.05790 5.06402 5.16923 5.21106 5.24045 5.28818 5.38935 5.45328 5.53423 5.59988 5.60733 5.71007 5.75763 5.80528 6.30906 6.36676 7.01191 7.14565 7.42544 8.21136 8.43476 9.39968 Molecular weight = 336.23amu Principal moments of inertia in cm(-1) A = 0.011080 B = 0.003305 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.538033 B = 8470.710139 C = 9399.449066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.120 4.120 3 C 0.116 3.884 4 N -0.269 5.269 5 N -0.302 5.302 6 C -0.005 4.005 7 C -0.190 4.190 8 C -0.057 4.057 9 C 0.569 3.431 10 O -0.572 6.572 11 N -0.595 5.595 12 C 0.050 3.950 13 C 0.130 3.870 14 C -0.119 4.119 15 C 0.181 3.819 16 H 0.053 0.947 17 N -0.731 5.731 18 C -0.211 4.211 19 H 0.080 0.920 20 C -0.081 4.081 21 N -0.972 5.972 22 Si 0.959 3.041 23 H -0.279 1.279 24 H -0.304 1.304 25 H -0.278 1.278 26 C -0.109 4.109 27 C -0.136 4.136 28 C -0.135 4.135 29 H 0.078 0.922 30 H 0.043 0.957 31 H 0.069 0.931 32 H 0.043 0.957 33 H 0.077 0.923 34 H 0.115 0.885 35 H 0.090 0.910 36 H 0.223 0.777 37 H 0.211 0.789 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.047 0.953 43 H 0.033 0.967 44 H 0.098 0.902 45 H 0.368 0.632 46 H 0.244 0.756 47 H 0.037 0.963 48 H 0.048 0.952 49 H 0.047 0.953 50 H 0.043 0.957 51 H 0.064 0.936 52 H 0.054 0.946 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.119 -6.258 13.283 23.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.158 4.158 3 C -0.004 4.004 4 N -0.057 5.057 5 N -0.134 5.134 6 C -0.181 4.181 7 C -0.218 4.218 8 C -0.185 4.185 9 C 0.357 3.643 10 O -0.452 6.452 11 N -0.326 5.326 12 C -0.090 4.090 13 C 0.008 3.992 14 C -0.158 4.158 15 C 0.073 3.927 16 H 0.071 0.929 17 N -0.370 5.370 18 C -0.343 4.343 19 H 0.097 0.903 20 C -0.273 4.273 21 N -0.624 5.624 22 Si 0.790 3.210 23 H -0.206 1.206 24 H -0.231 1.231 25 H -0.204 1.204 26 C -0.130 4.130 27 C -0.193 4.193 28 C -0.193 4.193 29 H 0.097 0.903 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.096 0.904 34 H 0.134 0.866 35 H 0.108 0.892 36 H 0.240 0.760 37 H 0.227 0.773 38 H 0.101 0.899 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.066 0.934 43 H 0.051 0.949 44 H 0.116 0.884 45 H 0.199 0.801 46 H 0.053 0.947 47 H 0.055 0.945 48 H 0.067 0.933 49 H 0.066 0.934 50 H 0.062 0.938 51 H 0.083 0.917 52 H 0.073 0.927 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 16.713 -6.059 13.956 22.601 hybrid contribution -1.015 0.705 -1.362 1.839 sum 15.698 -5.354 12.594 20.825 Atomic orbital electron populations 1.21642 0.93060 1.03042 1.02454 1.21679 0.97930 0.94368 1.01866 1.22254 0.72742 1.00118 1.05303 1.45921 1.07851 1.49730 1.02153 1.73173 1.02623 1.20474 1.17125 1.24324 0.94652 1.04374 0.94735 1.23471 0.94889 1.06286 0.97127 1.21515 0.93685 1.14929 0.88349 1.17442 0.85683 0.77165 0.83993 1.90870 1.16279 1.52171 1.85872 1.47635 1.10471 1.69237 1.05257 1.22816 0.78044 1.03044 1.05118 1.21390 0.99205 0.97755 0.80849 1.22066 1.00606 0.96904 0.96252 1.20455 0.87965 0.90013 0.94303 0.92949 1.42696 1.27404 1.57963 1.08955 1.19498 1.04676 1.20588 0.89585 0.90261 1.25435 0.99270 1.03154 0.99408 1.69857 1.18562 1.45684 1.28315 0.85408 0.76922 0.78415 0.80282 1.20565 1.23111 1.20442 1.21667 0.97568 0.97256 0.96532 1.21747 1.01172 1.00051 0.96360 1.21816 0.96437 0.98903 1.02122 0.90343 0.93778 0.91174 0.93838 0.90417 0.86636 0.89157 0.76044 0.77254 0.89876 0.88387 0.88388 0.88229 0.93435 0.94853 0.88391 0.80123 0.94729 0.94452 0.93275 0.93371 0.93808 0.91739 0.92673 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 9.91 71.98 0.71 -2.57 16 2 C -0.12 -3.01 6.26 30.59 0.19 -2.82 16 3 C 0.12 3.09 5.70 86.38 0.49 3.58 16 4 N -0.27 -7.43 3.35 -334.70 -1.12 -8.55 16 5 N -0.30 -7.47 11.90 -57.14 -0.68 -8.15 16 6 C -0.01 -0.09 12.03 85.19 1.02 0.93 16 7 C -0.19 -3.46 8.87 22.66 0.20 -3.26 16 8 C -0.06 -1.55 6.79 40.79 0.28 -1.27 16 9 C 0.57 18.71 7.64 86.59 0.66 19.37 16 10 O -0.57 -24.44 14.44 -4.11 -0.06 -24.50 16 11 N -0.59 -15.78 2.87 -850.98 -2.45 -18.23 16 12 C 0.05 0.71 8.67 127.77 1.11 1.81 16 13 C 0.13 4.15 5.23 86.38 0.45 4.61 16 14 C -0.12 -3.81 4.86 30.59 0.15 -3.66 16 15 C 0.18 6.78 2.02 44.99 0.09 6.88 16 16 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 17 N -0.73 -36.52 4.45 -322.93 -1.44 -37.96 16 18 C -0.21 -11.46 7.57 84.03 0.64 -10.83 16 19 H 0.08 4.08 7.40 -2.91 -0.02 4.06 16 20 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 21 N -0.97 -61.99 13.06 21.65 0.28 -61.71 16 22 Si 0.96 47.11 29.55 68.60 2.03 49.14 16 23 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 24 H -0.30 -15.40 7.11 99.48 0.71 -14.69 16 25 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 26 C -0.11 -3.72 2.69 -10.79 -0.03 -3.75 16 27 C -0.14 -4.95 8.26 71.98 0.59 -4.36 16 28 C -0.14 -3.30 8.85 71.98 0.64 -2.66 16 29 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.09 2.90 6.52 -2.39 -0.02 2.88 16 36 H 0.22 2.02 8.06 -2.91 -0.02 1.99 16 37 H 0.21 2.12 4.60 -2.91 -0.01 2.11 16 38 H 0.08 0.85 7.44 -2.38 -0.02 0.83 16 39 H 0.10 1.13 5.25 -2.39 -0.01 1.11 16 40 H 0.10 0.99 8.03 -2.39 -0.02 0.97 16 41 H 0.10 2.64 8.07 -2.39 -0.02 2.62 16 42 H 0.05 2.06 7.11 -2.38 -0.02 2.04 16 43 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.10 2.38 6.17 -2.38 -0.01 2.36 16 45 H 0.37 21.06 7.80 -92.71 -0.72 20.34 16 46 H 0.24 15.34 8.31 -92.71 -0.77 14.57 16 47 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 49 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 50 H 0.04 1.96 6.01 -2.38 -0.01 1.95 16 51 H 0.06 1.38 6.32 -2.39 -0.02 1.37 16 52 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 53 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -77.09 414.67 4.40 -72.69 By element: Atomic # 1 Polarization: 39.35 SS G_CDS: 0.17 Total: 39.52 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: 7.67 Total: -2.25 kcal Atomic # 7 Polarization: -129.19 SS G_CDS: -5.40 Total: -134.60 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -0.06 Total: -24.50 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Total: -77.09 4.40 -72.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570775495.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.950 kcal (2) G-P(sol) polarization free energy of solvation -77.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds