Wall clock time and date at job start Sat Apr 11 2020 04:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53010 * 109.46748 * 2 1 4 4 N 1.46504 * 109.46935 * 179.97438 * 3 2 1 5 5 N 1.39934 * 125.75789 * 269.97753 * 4 3 2 6 6 C 1.30445 * 108.89702 * 179.77652 * 5 4 3 7 7 C 1.41287 * 108.02446 * 0.37682 * 6 5 4 8 8 C 1.47434 * 126.41843 * 179.87802 * 7 6 5 9 9 O 1.21598 * 120.00330 * 179.69331 * 8 7 6 10 10 N 1.34773 * 119.99611 * 359.69409 * 8 7 6 11 11 C 1.46498 * 120.00043 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47272 * 179.97438 * 11 10 8 13 13 C 1.53003 * 109.47269 * 180.02562 * 12 11 10 14 14 H 1.09000 * 109.46953 * 305.00936 * 13 12 11 15 15 N 1.46505 * 109.46807 * 65.00478 * 13 12 11 16 16 C 1.36931 * 119.99788 * 205.00000 * 15 13 12 17 17 H 1.08002 * 120.00438 * 0.02562 * 16 15 13 18 18 C 1.38817 * 119.99680 * 179.72358 * 16 15 13 19 19 N 1.31614 * 119.99888 * 0.27479 * 18 16 15 20 20 Si 1.86803 * 119.99862 * 180.27671 * 18 16 15 21 21 H 1.48498 * 109.47174 * 90.00121 * 20 18 16 22 22 H 1.48501 * 109.47062 * 210.00072 * 20 18 16 23 23 H 1.48504 * 109.46913 * 329.99871 * 20 18 16 24 24 C 1.52996 * 109.47332 * 185.00423 * 13 12 11 25 25 C 1.52998 * 109.46903 * 305.00350 * 24 13 12 26 26 C 1.52993 * 109.46923 * 65.00088 * 24 13 12 27 27 C 1.34261 * 125.74997 * 89.99817 * 4 3 2 28 28 C 1.50703 * 126.29281 * 359.96385 * 27 4 3 29 29 H 1.09001 * 109.46703 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47895 * 300.00017 * 1 2 3 31 31 H 1.09000 * 109.46667 * 60.00746 * 1 2 3 32 32 H 1.08991 * 109.47895 * 239.99983 * 2 1 3 33 33 H 1.08995 * 109.47197 * 119.99725 * 2 1 3 34 34 H 1.08999 * 109.46758 * 60.00028 * 3 2 1 35 35 H 1.08995 * 109.47048 * 299.99817 * 3 2 1 36 36 H 1.08003 * 125.98578 * 180.26222 * 6 5 4 37 37 H 0.97004 * 120.00109 * 359.97438 * 10 8 7 38 38 H 1.09000 * 109.46784 * 60.00269 * 11 10 8 39 39 H 1.08992 * 109.47427 * 300.00334 * 11 10 8 40 40 H 1.09000 * 109.46766 * 60.00541 * 12 11 10 41 41 H 1.08992 * 109.47398 * 300.00634 * 12 11 10 42 42 H 0.97000 * 119.99792 * 24.99795 * 15 13 12 43 43 H 0.97005 * 119.99715 * 179.97438 * 19 18 16 44 44 H 1.08990 * 109.47060 * 185.00303 * 24 13 12 45 45 H 1.09003 * 109.47634 * 60.00178 * 25 24 13 46 46 H 1.09004 * 109.47209 * 179.97438 * 25 24 13 47 47 H 1.08998 * 109.47363 * 299.99597 * 25 24 13 48 48 H 1.08998 * 109.47742 * 299.99844 * 26 24 13 49 49 H 1.09004 * 109.47296 * 60.00553 * 26 24 13 50 50 H 1.09006 * 109.47144 * 179.97438 * 26 24 13 51 51 H 1.09005 * 109.46696 * 269.99521 * 28 27 4 52 52 H 1.08994 * 109.47086 * 29.99188 * 28 27 4 53 53 H 1.08999 * 109.47130 * 149.99412 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5050 1.4427 0.0006 5 7 4.3222 1.4433 1.1365 6 6 5.5707 1.4383 0.7587 7 6 5.6000 1.4431 -0.6539 8 6 6.8043 1.4425 -1.5043 9 8 6.6936 1.4414 -2.7153 10 7 8.0280 1.4432 -0.9396 11 6 9.2248 1.4421 -1.7846 12 6 10.4734 1.4439 -0.9004 13 6 11.7233 1.4433 -1.7829 14 1 11.6804 0.6007 -2.4730 15 7 11.7849 2.6943 -2.5430 16 6 12.4670 2.7416 -3.7294 17 1 12.9593 1.8568 -4.1050 18 6 12.5205 3.9254 -4.4524 19 7 11.9202 5.0036 -3.9949 20 14 13.4446 3.9881 -6.0747 21 1 12.5204 3.6423 -7.1844 22 1 13.9817 5.3563 -6.2859 23 1 14.5663 3.0154 -6.0433 24 6 12.9688 1.3193 -0.9031 25 6 12.9641 2.4318 0.1472 26 6 12.9661 -0.0417 -0.2044 27 6 4.2898 1.4425 -1.0887 28 6 3.8258 1.4415 -2.5225 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6765 1.9564 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 6.4312 1.4335 1.4113 37 1 8.1164 1.4445 0.0264 38 1 9.2252 2.3313 -2.4150 39 1 9.2252 0.5514 -2.4127 40 1 10.4732 0.5549 -0.2697 41 1 10.4728 2.3348 -0.2725 42 1 11.3424 3.4889 -2.2058 43 1 11.9579 5.8310 -4.5000 44 1 13.8613 1.4081 -1.5224 45 1 12.0715 2.3430 0.7666 46 1 13.8512 2.3432 0.7744 47 1 12.9660 3.4015 -0.3505 48 1 12.0736 -0.1306 0.4149 49 1 12.9696 -0.8344 -0.9527 50 1 13.8538 -0.1303 0.4221 51 1 3.7146 0.4135 -2.8676 52 1 2.8669 1.9546 -2.5944 53 1 4.5603 1.9554 -3.1425 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571351970.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:53:33 Heat of formation + Delta-G solvation = -1.159242 kcal Electronic energy + Delta-G solvation = -29175.136195 eV Core-core repulsion = 25274.872470 eV Total energy + Delta-G solvation = -3900.263724 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.227 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.51084 -40.24832 -38.94297 -36.42053 -35.85279 -35.02474 -33.42793 -32.69927 -32.19548 -30.91665 -28.45472 -27.85192 -27.36805 -26.54272 -24.79386 -23.65924 -23.12698 -22.84004 -21.32915 -20.64467 -19.73988 -19.21849 -18.53521 -17.08573 -16.89516 -16.66107 -16.60582 -16.17843 -16.04684 -15.70633 -15.39990 -15.25010 -15.11177 -14.83979 -14.56701 -14.31467 -14.19925 -14.05853 -13.71969 -13.60614 -13.29970 -13.17232 -13.03739 -12.90298 -12.87509 -12.76566 -12.53169 -12.49709 -12.31237 -12.16044 -12.05524 -11.94516 -11.81550 -11.73854 -11.70599 -11.37523 -11.16595 -10.85372 -10.74326 -10.39559 -10.09004 -9.56099 -8.88490 -7.88364 -5.13407 0.48489 1.16387 1.34060 1.46514 1.48478 1.55626 2.36984 2.49718 2.59697 3.44980 3.46091 3.56475 3.83838 3.90483 3.96617 3.96692 4.04528 4.12791 4.17478 4.24325 4.36012 4.40042 4.44415 4.52526 4.56566 4.60703 4.61887 4.63570 4.77952 4.84732 4.88672 4.93333 4.99089 5.03185 5.08337 5.10582 5.12995 5.19261 5.25126 5.34820 5.35559 5.41536 5.43420 5.47382 5.55862 5.58552 5.70595 5.77682 5.89081 6.34762 6.50813 6.73317 7.39627 7.40976 8.20324 8.41614 9.35041 Molecular weight = 336.23amu Principal moments of inertia in cm(-1) A = 0.014161 B = 0.002302 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.738599 B =12162.187611 C =13526.063511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.134 4.134 3 C 0.118 3.882 4 N -0.356 5.356 5 N -0.318 5.318 6 C 0.089 3.911 7 C -0.321 4.321 8 C 0.586 3.414 9 O -0.591 6.591 10 N -0.710 5.710 11 C 0.138 3.862 12 C -0.119 4.119 13 C 0.179 3.821 14 H 0.037 0.963 15 N -0.728 5.728 16 C -0.226 4.226 17 H 0.071 0.929 18 C -0.078 4.078 19 N -0.968 5.968 20 Si 0.963 3.037 21 H -0.293 1.293 22 H -0.298 1.298 23 H -0.270 1.270 24 C -0.110 4.110 25 C -0.132 4.132 26 C -0.137 4.137 27 C 0.154 3.846 28 C -0.097 4.097 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.107 0.893 35 H 0.118 0.882 36 H 0.218 0.782 37 H 0.413 0.587 38 H 0.035 0.965 39 H 0.049 0.951 40 H 0.105 0.895 41 H 0.075 0.925 42 H 0.372 0.628 43 H 0.247 0.753 44 H 0.037 0.963 45 H 0.069 0.931 46 H 0.052 0.948 47 H 0.027 0.973 48 H 0.073 0.927 49 H 0.049 0.951 50 H 0.057 0.943 51 H 0.095 0.905 52 H 0.100 0.900 53 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.675 -11.881 14.376 27.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.173 4.173 3 C -0.002 4.002 4 N -0.135 5.135 5 N -0.137 5.137 6 C -0.098 4.098 7 C -0.336 4.336 8 C 0.375 3.625 9 O -0.473 6.473 10 N -0.362 5.362 11 C 0.014 3.986 12 C -0.157 4.157 13 C 0.070 3.930 14 H 0.055 0.945 15 N -0.367 5.367 16 C -0.358 4.358 17 H 0.089 0.911 18 C -0.270 4.270 19 N -0.620 5.620 20 Si 0.793 3.207 21 H -0.221 1.221 22 H -0.225 1.225 23 H -0.195 1.195 24 C -0.131 4.131 25 C -0.189 4.189 26 C -0.195 4.195 27 C 0.020 3.980 28 C -0.155 4.155 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.125 0.875 35 H 0.136 0.864 36 H 0.235 0.765 37 H 0.250 0.750 38 H 0.053 0.947 39 H 0.068 0.932 40 H 0.123 0.877 41 H 0.093 0.907 42 H 0.204 0.796 43 H 0.056 0.944 44 H 0.056 0.944 45 H 0.088 0.912 46 H 0.071 0.929 47 H 0.046 0.954 48 H 0.092 0.908 49 H 0.068 0.932 50 H 0.076 0.924 51 H 0.113 0.887 52 H 0.119 0.881 53 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -21.595 -11.942 14.416 28.579 hybrid contribution 1.358 0.828 -1.432 2.141 sum -20.237 -11.114 12.983 26.488 Atomic orbital electron populations 1.21675 0.92442 1.03046 1.03135 1.21862 0.98116 0.94689 1.02609 1.22278 0.71770 0.99735 1.06377 1.48799 1.07728 1.54460 1.02554 1.77110 1.02246 1.25929 1.08409 1.24442 0.96101 0.96030 0.93270 1.20009 0.92601 1.26675 0.94281 1.17604 0.83209 0.75023 0.86683 1.90729 1.87321 1.53109 1.16164 1.45615 1.04618 1.75070 1.10849 1.21061 0.83822 1.00433 0.93311 1.22011 0.91847 1.03952 0.97898 1.20421 0.92782 0.88227 0.91584 0.94459 1.42572 1.62703 1.08973 1.22481 1.19552 1.23608 0.95239 0.97437 0.91091 1.25427 1.03218 0.96094 1.02297 1.69804 1.50480 1.01012 1.40675 0.85286 0.78426 0.76365 0.80626 1.22079 1.22476 1.19526 1.21629 0.98619 0.96002 0.96836 1.21685 1.01615 0.97790 0.97826 1.21820 1.02468 0.95101 1.00112 1.21810 0.90175 0.93854 0.92112 1.20695 1.03073 1.04678 0.87019 0.91682 0.91637 0.91114 0.91677 0.92341 0.87484 0.86402 0.76530 0.75038 0.94667 0.93250 0.87701 0.90659 0.79596 0.94435 0.94425 0.91204 0.92853 0.95425 0.90833 0.93155 0.92359 0.88700 0.88140 0.90148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 71.98 0.71 -0.11 16 2 C -0.13 -1.33 6.26 30.60 0.19 -1.14 16 3 C 0.12 1.32 6.21 86.38 0.54 1.86 16 4 N -0.36 -6.96 3.58 -332.97 -1.19 -8.15 16 5 N -0.32 -7.09 12.50 -56.28 -0.70 -7.80 16 6 C 0.09 1.87 11.50 85.65 0.99 2.85 16 7 C -0.32 -8.37 6.13 -20.15 -0.12 -8.49 16 8 C 0.59 18.88 7.81 86.67 0.68 19.55 16 9 O -0.59 -24.08 14.84 -4.02 -0.06 -24.14 16 10 N -0.71 -19.69 5.55 -466.39 -2.59 -22.28 16 11 C 0.14 4.70 5.56 86.38 0.48 5.18 16 12 C -0.12 -3.43 4.07 30.60 0.12 -3.31 16 13 C 0.18 6.64 2.06 44.99 0.09 6.73 16 14 H 0.04 1.47 8.08 -2.39 -0.02 1.45 16 15 N -0.73 -35.77 4.03 -322.93 -1.30 -37.07 16 16 C -0.23 -12.62 9.93 84.04 0.83 -11.79 16 17 H 0.07 3.86 7.83 -2.91 -0.02 3.83 16 18 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 19 N -0.97 -60.59 13.06 21.65 0.28 -60.31 16 20 Si 0.96 47.82 29.55 68.60 2.03 49.85 16 21 H -0.29 -14.54 7.11 99.48 0.71 -13.84 16 22 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 23 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 24 C -0.11 -3.58 2.88 -10.80 -0.03 -3.62 16 25 C -0.13 -4.07 8.59 71.98 0.62 -3.46 16 26 C -0.14 -3.27 8.95 71.98 0.64 -2.63 16 27 C 0.15 3.54 7.01 42.14 0.30 3.84 16 28 C -0.10 -1.87 9.57 71.24 0.68 -1.19 16 29 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.12 0.80 7.02 -2.39 -0.02 0.78 16 36 H 0.22 2.83 7.50 -2.91 -0.02 2.81 16 37 H 0.41 8.03 7.43 -92.71 -0.69 7.34 16 38 H 0.03 1.55 7.75 -2.39 -0.02 1.53 16 39 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.10 2.25 6.35 -2.39 -0.02 2.23 16 41 H 0.07 2.13 6.65 -2.39 -0.02 2.11 16 42 H 0.37 19.90 7.80 -92.71 -0.72 19.17 16 43 H 0.25 15.14 8.31 -92.70 -0.77 14.37 16 44 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.07 1.79 6.46 -2.39 -0.02 1.77 16 46 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.03 1.04 7.75 -2.39 -0.02 1.03 16 48 H 0.07 1.43 6.46 -2.39 -0.02 1.41 16 49 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 50 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 51 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 52 H 0.10 1.22 7.05 -2.39 -0.02 1.20 16 53 H 0.08 2.10 6.50 -2.39 -0.02 2.09 16 Total: -1.00 -77.75 423.01 3.15 -74.60 By element: Atomic # 1 Polarization: 35.66 SS G_CDS: -0.51 Total: 35.16 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: 7.19 Total: 0.15 kcal Atomic # 7 Polarization: -130.10 SS G_CDS: -5.50 Total: -135.60 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.06 Total: -24.14 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 2.03 Total: 49.85 kcal Total: -77.75 3.15 -74.60 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571351970.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.437 kcal (2) G-P(sol) polarization free energy of solvation -77.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds