Wall clock time and date at job start Sat Apr 11 2020 04:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47839 * 2 1 4 4 C 1.53006 * 109.46626 * 119.99931 * 2 1 3 5 5 C 1.50703 * 109.47148 * 294.99624 * 4 2 1 6 6 O 1.21279 * 119.99456 * 0.02562 * 5 4 2 7 7 N 1.34774 * 119.99766 * 180.02562 * 5 4 2 8 8 C 1.46504 * 119.99669 * 179.97438 * 7 5 4 9 9 H 1.08997 * 109.46993 * 325.00432 * 8 7 5 10 10 C 1.53000 * 109.47114 * 205.00010 * 8 7 5 11 11 N 1.46502 * 109.46983 * 55.00297 * 10 8 7 12 12 C 1.36932 * 119.99971 * 180.02562 * 11 10 8 13 13 H 1.07999 * 119.99975 * 359.97438 * 12 11 10 14 14 C 1.38812 * 120.00164 * 179.97438 * 12 11 10 15 15 N 1.31625 * 119.99844 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00163 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.46981 * 60.00618 * 16 14 12 18 18 H 1.48499 * 109.46968 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47321 * 300.00350 * 16 14 12 20 20 C 1.52995 * 109.46636 * 85.00181 * 8 7 5 21 21 C 1.52997 * 109.47469 * 60.00154 * 20 8 7 22 22 C 1.53008 * 109.46756 * 179.97438 * 20 8 7 23 23 C 1.53004 * 109.47580 * 299.99727 * 20 8 7 24 24 C 1.50698 * 109.46824 * 239.99520 * 2 1 3 25 25 C 1.39868 * 126.04185 * 299.69288 * 24 2 1 26 26 N 1.30837 * 108.20146 * 179.82017 * 25 24 2 27 27 N 1.40086 * 108.20671 * 0.44238 * 26 25 24 28 28 C 1.46499 * 126.03669 * 179.73916 * 27 26 25 29 29 C 1.34944 * 107.92355 * 359.71835 * 27 26 25 30 30 H 1.08993 * 109.47839 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47160 * 300.00438 * 1 2 3 32 32 H 1.09002 * 109.46719 * 60.00158 * 1 2 3 33 33 H 1.09000 * 109.47314 * 54.99967 * 4 2 1 34 34 H 1.09007 * 109.46744 * 174.99588 * 4 2 1 35 35 H 0.96996 * 120.00429 * 0.02562 * 7 5 4 36 36 H 1.08996 * 109.47177 * 175.00105 * 10 8 7 37 37 H 1.08994 * 109.47276 * 295.00580 * 10 8 7 38 38 H 0.97000 * 120.00170 * 359.97438 * 11 10 8 39 39 H 0.97001 * 119.99699 * 180.02562 * 15 14 12 40 40 H 1.09005 * 109.47257 * 59.99447 * 21 20 8 41 41 H 1.09003 * 109.47521 * 179.97438 * 21 20 8 42 42 H 1.09004 * 109.47355 * 299.99910 * 21 20 8 43 43 H 1.09004 * 109.47011 * 60.00282 * 22 20 8 44 44 H 1.09003 * 109.46863 * 180.02562 * 22 20 8 45 45 H 1.08996 * 109.47168 * 300.00285 * 22 20 8 46 46 H 1.08995 * 109.46551 * 60.00265 * 23 20 8 47 47 H 1.09002 * 109.47325 * 180.02562 * 23 20 8 48 48 H 1.08998 * 109.46739 * 300.00183 * 23 20 8 49 49 H 1.08000 * 125.90241 * 0.02562 * 25 24 2 50 50 H 1.08994 * 109.47496 * 269.97007 * 28 27 26 51 51 H 1.09002 * 109.47366 * 29.97781 * 28 27 26 52 52 H 1.09004 * 109.46747 * 149.97408 * 28 27 26 53 53 H 1.07998 * 126.12775 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6412 0.0571 2.4767 6 8 1.0109 1.0870 2.3632 7 7 1.9852 -0.3914 3.7002 8 6 1.5981 0.3657 4.8933 9 1 1.6293 1.4326 4.6725 10 6 2.5689 0.0520 6.0335 11 7 3.9409 0.3168 5.5933 12 6 4.9876 0.1065 6.4508 13 1 4.8017 -0.2542 7.4516 14 6 6.2877 0.3569 6.0336 15 7 6.5143 0.7969 4.8140 16 14 7.7156 0.0706 7.2035 17 1 7.7395 -1.3559 7.6155 18 1 8.9902 0.4096 6.5212 19 1 7.5521 0.9298 8.4036 20 6 0.1792 -0.0279 5.3087 21 6 0.1353 -1.5256 5.6185 22 6 -0.2248 0.7622 6.5552 23 6 -0.7917 0.2857 4.1686 24 6 2.0322 -0.7105 -1.2304 25 6 1.7783 -2.0427 -1.5727 26 7 2.3774 -2.2941 -2.7084 27 7 3.0409 -1.1311 -3.1201 28 6 3.8400 -0.9803 -4.3387 29 6 2.8136 -0.1741 -2.1963 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.6052 -1.7198 1.2953 34 1 3.1263 -0.7996 1.2057 35 1 2.4896 -1.2149 3.7908 36 1 2.3353 0.6806 6.8928 37 1 2.4734 -0.9969 6.3138 38 1 4.1080 0.6404 4.6943 39 1 7.4228 0.9715 4.5223 40 1 0.8270 -1.7490 6.4309 41 1 -0.8754 -1.8059 5.9150 42 1 0.4234 -2.0888 4.7309 43 1 -0.1936 1.8293 6.3349 44 1 -1.2356 0.4815 6.8515 45 1 0.4669 0.5384 7.3673 46 1 -0.5037 -0.2775 3.2810 47 1 -1.8026 0.0056 4.4648 48 1 -0.7605 1.3526 3.9480 49 1 1.1869 -2.7420 -1.0004 50 1 4.8774 -1.2393 -4.1273 51 1 3.4508 -1.6419 -5.1127 52 1 3.7863 0.0526 -4.6829 53 1 3.1877 0.8386 -2.2232 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571629701.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:53:39 Heat of formation + Delta-G solvation = 15.757304 kcal Electronic energy + Delta-G solvation = -30328.862564 eV Core-core repulsion = 26429.332396 eV Total energy + Delta-G solvation = -3899.530168 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.227 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.16920 -41.22358 -38.82678 -36.18276 -36.05537 -34.46940 -33.59604 -32.93134 -30.64309 -29.55110 -28.65294 -28.09461 -27.43067 -27.32548 -25.56601 -23.75668 -22.91016 -22.01877 -21.36744 -20.35078 -19.77509 -19.01434 -18.01061 -17.34780 -17.03503 -16.90271 -16.38745 -16.25724 -15.65729 -15.53083 -15.25170 -15.17113 -14.87296 -14.72368 -14.45910 -14.22706 -14.13840 -13.75092 -13.64840 -13.53200 -13.30997 -13.13124 -12.99710 -12.97534 -12.89220 -12.68902 -12.48506 -12.35093 -12.32094 -12.17844 -11.98617 -11.95688 -11.85866 -11.69952 -11.54858 -11.30859 -11.22420 -10.91329 -10.46454 -10.32702 -9.71978 -9.25456 -8.95753 -7.91808 -5.20389 0.98598 1.48997 1.51244 1.57179 1.73218 1.84980 1.90778 2.46405 2.58181 3.42246 3.64838 3.72573 3.85681 3.95654 4.04164 4.10767 4.18982 4.29043 4.33916 4.38783 4.41916 4.44488 4.49980 4.56486 4.69529 4.71209 4.75133 4.79399 4.85636 4.88330 4.89452 4.90737 4.96009 5.02431 5.11593 5.13771 5.14774 5.22530 5.30264 5.30797 5.37634 5.49573 5.52197 5.53389 5.55155 5.65441 5.76010 5.82081 6.16535 6.29164 6.77424 6.78394 7.36551 7.49699 8.11546 8.35393 9.30961 Molecular weight = 336.23amu Principal moments of inertia in cm(-1) A = 0.008472 B = 0.003398 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3304.359108 B = 8237.433814 C =10934.651661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.017 3.983 3 H 0.064 0.936 4 C -0.126 4.126 5 C 0.513 3.487 6 O -0.566 6.566 7 N -0.709 5.709 8 C 0.161 3.839 9 H 0.053 0.947 10 C 0.144 3.856 11 N -0.741 5.741 12 C -0.243 4.243 13 H 0.076 0.924 14 C -0.072 4.072 15 N -0.967 5.967 16 Si 0.970 3.030 17 H -0.276 1.276 18 H -0.298 1.298 19 H -0.281 1.281 20 C -0.070 4.070 21 C -0.137 4.137 22 C -0.140 4.140 23 C -0.120 4.120 24 C -0.238 4.238 25 C 0.051 3.949 26 N -0.335 5.335 27 N -0.384 5.384 28 C 0.094 3.906 29 C 0.053 3.947 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.048 0.952 33 H 0.112 0.888 34 H 0.086 0.914 35 H 0.405 0.595 36 H 0.032 0.968 37 H 0.042 0.958 38 H 0.374 0.626 39 H 0.249 0.751 40 H 0.056 0.944 41 H 0.067 0.933 42 H 0.055 0.945 43 H 0.046 0.954 44 H 0.073 0.927 45 H 0.057 0.943 46 H 0.049 0.951 47 H 0.058 0.942 48 H 0.040 0.960 49 H 0.197 0.803 50 H 0.080 0.920 51 H 0.091 0.909 52 H 0.111 0.889 53 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.504 -5.174 -12.462 19.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.003 4.003 3 H 0.083 0.917 4 C -0.166 4.166 5 C 0.301 3.699 6 O -0.445 6.445 7 N -0.359 5.359 8 C 0.055 3.945 9 H 0.071 0.929 10 C 0.017 3.983 11 N -0.384 5.384 12 C -0.375 4.375 13 H 0.094 0.906 14 C -0.264 4.264 15 N -0.618 5.618 16 Si 0.799 3.201 17 H -0.202 1.202 18 H -0.225 1.225 19 H -0.207 1.207 20 C -0.071 4.071 21 C -0.194 4.194 22 C -0.198 4.198 23 C -0.177 4.177 24 C -0.250 4.250 25 C -0.135 4.135 26 N -0.157 5.157 27 N -0.166 5.166 28 C -0.046 4.046 29 C -0.093 4.093 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.130 0.870 34 H 0.105 0.895 35 H 0.240 0.760 36 H 0.050 0.950 37 H 0.059 0.941 38 H 0.206 0.794 39 H 0.058 0.942 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.092 0.908 45 H 0.076 0.924 46 H 0.068 0.932 47 H 0.077 0.923 48 H 0.059 0.941 49 H 0.214 0.786 50 H 0.099 0.901 51 H 0.110 0.890 52 H 0.130 0.870 53 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -13.532 -5.357 -13.437 19.808 hybrid contribution 1.428 0.564 0.887 1.773 sum -12.105 -4.792 -12.549 18.083 Atomic orbital electron populations 1.21825 0.93998 1.01806 1.01802 1.18946 0.95899 0.97257 0.88241 0.91741 1.21718 1.02888 1.00675 0.91272 1.20950 0.78284 0.85546 0.85079 1.90630 1.41282 1.25683 1.86938 1.45961 1.56850 1.27744 1.05394 1.20995 0.93647 0.95259 0.84572 0.92889 1.21216 0.83458 0.98672 0.94904 1.42517 1.01236 1.80037 1.14657 1.19574 0.86788 1.35643 0.95463 0.90562 1.25499 0.99866 1.02888 0.98169 1.69821 1.19864 1.53364 1.18705 0.85264 0.78674 0.78082 0.78033 1.20230 1.22472 1.20728 1.20841 0.93108 0.96990 0.96191 1.21869 1.02238 0.93696 1.01588 1.21889 1.02012 0.99368 0.96514 1.21776 0.97914 1.00870 0.97124 1.20112 1.08738 0.95426 1.00705 1.24029 0.99124 0.96431 0.93868 1.77259 1.14800 1.07474 1.16125 1.48754 1.40061 1.07816 1.19973 1.22145 0.94488 1.05287 0.82705 1.22801 0.99350 0.96641 0.90540 0.92170 0.92163 0.93238 0.86995 0.89545 0.76016 0.94996 0.94064 0.79390 0.94196 0.92524 0.91396 0.92589 0.93516 0.90819 0.92383 0.93217 0.92262 0.94119 0.78613 0.90101 0.88987 0.87011 0.78889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.83 71.98 0.64 -2.43 16 2 C 0.02 0.39 2.40 -11.54 -0.03 0.37 16 3 H 0.06 1.73 7.92 -2.39 -0.02 1.71 16 4 C -0.13 -3.04 5.03 29.85 0.15 -2.89 16 5 C 0.51 15.46 5.90 87.66 0.52 15.98 16 6 O -0.57 -19.77 11.09 -3.03 -0.03 -19.80 16 7 N -0.71 -21.64 3.64 -442.54 -1.61 -23.25 16 8 C 0.16 5.26 1.69 44.99 0.08 5.34 16 9 H 0.05 2.08 7.58 -2.39 -0.02 2.07 16 10 C 0.14 5.45 5.10 86.38 0.44 5.89 16 11 N -0.74 -36.43 5.43 -343.46 -1.87 -38.29 16 12 C -0.24 -13.20 9.99 84.03 0.84 -12.36 16 13 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 14 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 15 N -0.97 -58.45 13.06 21.65 0.28 -58.17 16 16 Si 0.97 45.52 29.55 68.60 2.03 47.55 16 17 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 18 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 19 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 20 C -0.07 -1.80 0.62 -52.18 -0.03 -1.83 16 21 C -0.14 -3.05 7.97 71.98 0.57 -2.47 16 22 C -0.14 -3.38 8.12 71.98 0.58 -2.79 16 23 C -0.12 -3.10 7.00 71.98 0.50 -2.59 16 24 C -0.24 -5.31 4.80 -20.14 -0.10 -5.41 16 25 C 0.05 1.13 11.54 85.24 0.98 2.12 16 26 N -0.33 -8.35 12.58 -57.02 -0.72 -9.07 16 27 N -0.38 -7.94 4.01 -369.57 -1.48 -9.43 16 28 C 0.09 1.10 11.47 127.77 1.47 2.56 16 29 C 0.05 1.09 11.38 83.54 0.95 2.04 16 30 H 0.06 1.15 8.03 -2.39 -0.02 1.13 16 31 H 0.06 1.59 5.95 -2.39 -0.01 1.58 16 32 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 35 H 0.40 11.93 8.60 -92.71 -0.80 11.14 16 36 H 0.03 1.24 6.71 -2.39 -0.02 1.22 16 37 H 0.04 1.48 6.17 -2.39 -0.01 1.47 16 38 H 0.37 19.96 7.33 -92.71 -0.68 19.28 16 39 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 40 H 0.06 1.32 6.32 -2.38 -0.02 1.31 16 41 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.06 1.22 7.60 -2.39 -0.02 1.20 16 43 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 44 H 0.07 1.45 8.14 -2.39 -0.02 1.44 16 45 H 0.06 1.43 6.54 -2.39 -0.02 1.42 16 46 H 0.05 1.33 5.77 -2.39 -0.01 1.32 16 47 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 48 H 0.04 1.22 7.53 -2.39 -0.02 1.20 16 49 H 0.20 3.34 8.06 -2.91 -0.02 3.32 16 50 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 51 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 52 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 53 H 0.19 2.92 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -70.72 413.76 4.06 -66.66 By element: Atomic # 1 Polarization: 46.44 SS G_CDS: -0.57 Total: 45.86 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: 8.03 Total: -2.06 kcal Atomic # 7 Polarization: -132.81 SS G_CDS: -5.39 Total: -138.21 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.03 Total: -19.80 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -70.72 4.06 -66.66 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571629701.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.421 kcal (2) G-P(sol) polarization free energy of solvation -70.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds