Wall clock time and date at job start Sat Apr 11 2020 04:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99653 * 2 1 3 5 5 O 1.42905 * 109.47641 * 184.99974 * 4 2 1 6 6 C 1.42893 * 114.00054 * 180.02562 * 5 4 2 7 7 H 1.08997 * 110.29155 * 329.32989 * 6 5 4 8 8 C 1.54265 * 110.32488 * 91.45820 * 6 5 4 9 9 C 1.54376 * 105.06534 * 118.89451 * 8 6 5 10 10 N 1.48564 * 104.59286 * 23.84929 * 9 8 6 11 11 C 1.38580 * 110.99915 * 200.95917 * 10 9 8 12 12 N 1.31216 * 126.46831 * 120.15061 * 11 10 9 13 13 N 1.28534 * 109.85723 * 179.97438 * 12 11 10 14 14 C 1.30282 * 110.05490 * 0.02562 * 13 12 11 15 15 C 1.50706 * 126.34898 * 180.02562 * 14 13 12 16 16 H 1.08998 * 109.47285 * 179.97438 * 15 14 13 17 17 C 1.52995 * 109.47172 * 299.98131 * 15 14 13 18 18 C 1.53000 * 109.46711 * 59.97770 * 15 14 13 19 19 C 1.50700 * 109.46755 * 174.99965 * 18 15 14 20 20 H 1.07999 * 120.00512 * 0.02562 * 19 18 15 21 21 C 1.37885 * 119.99917 * 180.02562 * 19 18 15 22 22 N 1.31509 * 119.99723 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99838 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47145 * 60.00108 * 23 21 19 25 25 H 1.48506 * 109.47018 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47241 * 299.99824 * 23 21 19 27 27 N 1.36449 * 126.47595 * 299.83925 * 11 10 9 28 28 C 1.46499 * 127.13725 * 0.04283 * 27 11 10 29 29 C 1.48554 * 104.22265 * 320.52067 * 10 9 8 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 33 33 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 34 34 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 36 36 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 37 37 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 38 38 H 1.09004 * 109.47313 * 64.99993 * 4 2 1 39 39 H 1.09001 * 110.32076 * 237.78945 * 8 6 5 40 40 H 1.08996 * 110.32228 * 359.88939 * 8 6 5 41 41 H 1.08996 * 110.41361 * 142.62964 * 9 8 6 42 42 H 1.09004 * 110.40943 * 265.07515 * 9 8 6 43 43 H 1.08997 * 109.47268 * 180.02562 * 17 15 14 44 44 H 1.09006 * 109.47174 * 299.99360 * 17 15 14 45 45 H 1.08998 * 109.47319 * 59.99649 * 17 15 14 46 46 H 1.08991 * 109.47256 * 295.00128 * 18 15 14 47 47 H 1.09004 * 109.46999 * 55.00614 * 18 15 14 48 48 H 0.96999 * 119.99805 * 179.97438 * 22 21 19 49 49 H 1.09000 * 109.47552 * 90.01798 * 28 27 11 50 50 H 1.08998 * 109.46877 * 210.02374 * 28 27 11 51 51 H 1.08998 * 109.46729 * 330.02077 * 28 27 11 52 52 H 1.08997 * 110.41435 * 280.70170 * 29 10 9 53 53 H 1.09002 * 110.41391 * 158.25840 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 3.4643 -0.8238 -1.1919 6 6 4.0451 -1.4847 -2.3179 7 1 3.3557 -2.2290 -2.7163 8 6 4.4152 -0.4589 -3.4090 9 6 5.9442 -0.5877 -3.5788 10 7 6.2592 -1.9598 -3.1042 11 6 7.5956 -2.0697 -2.7543 12 7 8.0688 -2.3910 -1.5734 13 7 9.3537 -2.3988 -1.6052 14 6 9.7729 -2.0851 -2.7982 15 6 11.2095 -1.9851 -3.2426 16 1 11.2456 -1.7044 -4.2952 17 6 11.9292 -0.9247 -2.4069 18 6 11.8976 -3.3383 -3.0518 19 6 13.2964 -3.2734 -3.6088 20 1 13.6585 -2.3585 -4.0540 21 6 14.1139 -4.3822 -3.5502 22 7 13.6731 -5.4962 -3.0076 23 14 15.8479 -4.3016 -4.2400 24 1 16.6166 -3.2510 -3.5255 25 1 16.5158 -5.6150 -4.0550 26 1 15.7902 -3.9747 -5.6874 27 7 8.6678 -1.8700 -3.5743 28 6 8.6407 -1.4982 -4.9911 29 6 5.3817 -2.1469 -1.9202 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.8934 -0.5137 0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 1.6054 -1.7198 -1.2951 38 1 1.7517 -0.1584 -2.1369 39 1 3.9088 -0.7009 -4.3434 40 1 4.1520 0.5485 -3.0864 41 1 6.2211 -0.4750 -4.6269 42 1 6.4584 0.1535 -2.9669 43 1 12.9681 -0.8521 -2.7286 44 1 11.4390 0.0393 -2.5428 45 1 11.8931 -1.2055 -1.3543 46 1 11.9404 -3.5776 -1.9893 47 1 11.3334 -4.1099 -3.5756 48 1 14.2481 -6.2763 -2.9667 49 1 8.6484 -0.4121 -5.0819 50 1 9.5164 -1.9111 -5.4918 51 1 7.7369 -1.8950 -5.4535 52 1 5.8078 -1.6498 -1.0488 53 1 5.2351 -3.2082 -1.7195 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646689316.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:54:15 Heat of formation + Delta-G solvation = 4.404124 kcal Electronic energy + Delta-G solvation = -29519.401809 eV Core-core repulsion = 25619.379330 eV Total energy + Delta-G solvation = -3900.022479 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.227 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.04751 -40.60561 -38.60279 -37.09170 -36.07238 -35.64314 -34.27995 -32.51907 -29.89414 -29.59065 -28.72406 -28.40064 -28.00338 -26.75988 -25.90968 -24.12518 -23.66650 -21.87406 -21.84043 -21.11079 -20.46953 -18.69383 -18.55549 -17.96897 -17.55347 -17.14360 -16.51139 -16.30333 -16.29522 -15.82314 -15.61116 -15.13331 -14.97042 -14.81963 -14.43274 -14.23145 -14.02725 -13.83749 -13.74623 -13.66628 -13.56643 -13.25761 -13.02746 -12.99707 -12.81423 -12.72448 -12.67519 -12.51748 -12.40963 -12.28812 -11.98868 -11.93803 -11.75065 -11.71873 -11.53379 -11.49124 -11.42305 -11.19829 -11.14453 -10.74892 -10.53459 -10.51208 -9.41251 -8.15471 -6.27785 0.73944 1.20061 1.44422 1.48113 1.55427 1.79774 2.40676 2.45329 2.88294 3.18311 3.32828 3.41961 3.53413 3.73869 3.89706 3.95622 3.97592 4.01543 4.12635 4.17331 4.25257 4.28858 4.38950 4.40199 4.43842 4.50996 4.55093 4.62168 4.64074 4.66832 4.72032 4.77143 4.81936 4.82424 4.90777 4.97333 4.99975 5.01787 5.06634 5.09308 5.16773 5.25261 5.29464 5.35425 5.42604 5.44219 5.45619 5.48418 5.69524 5.83844 6.10927 6.20747 6.30542 6.88051 7.41503 7.75523 8.96833 Molecular weight = 336.23amu Principal moments of inertia in cm(-1) A = 0.030290 B = 0.001955 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.186029 B =14321.836703 C =14464.344748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.099 4.099 3 C -0.142 4.142 4 C 0.063 3.937 5 O -0.396 6.396 6 C 0.092 3.908 7 H 0.098 0.902 8 C -0.134 4.134 9 C 0.033 3.967 10 N -0.419 5.419 11 C 0.340 3.660 12 N -0.361 5.361 13 N -0.329 5.329 14 C 0.200 3.800 15 C 0.010 3.990 16 H 0.099 0.901 17 C -0.117 4.117 18 C 0.050 3.950 19 C -0.529 4.529 20 H 0.079 0.921 21 C -0.004 4.004 22 N -0.938 5.938 23 Si 0.969 3.031 24 H -0.265 1.265 25 H -0.291 1.291 26 H -0.261 1.261 27 N -0.480 5.480 28 C 0.064 3.936 29 C 0.053 3.947 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.043 0.957 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.109 0.891 40 H 0.093 0.907 41 H 0.115 0.885 42 H 0.041 0.959 43 H 0.075 0.925 44 H 0.062 0.938 45 H 0.037 0.963 46 H -0.013 1.013 47 H -0.022 1.022 48 H 0.261 0.739 49 H 0.107 0.893 50 H 0.097 0.903 51 H 0.111 0.889 52 H 0.054 0.946 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.380 16.045 -5.220 32.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.117 4.117 3 C -0.200 4.200 4 C -0.013 4.013 5 O -0.315 6.315 6 C 0.034 3.966 7 H 0.115 0.885 8 C -0.172 4.172 9 C -0.093 4.093 10 N -0.145 5.145 11 C -0.018 4.018 12 N -0.205 5.205 13 N -0.166 5.166 14 C -0.069 4.069 15 C -0.011 4.011 16 H 0.117 0.883 17 C -0.175 4.175 18 C 0.012 3.988 19 C -0.567 4.567 20 H 0.097 0.903 21 C -0.201 4.201 22 N -0.578 5.578 23 Si 0.793 3.207 24 H -0.189 1.189 25 H -0.217 1.217 26 H -0.185 1.185 27 N -0.174 5.174 28 C -0.077 4.077 29 C -0.074 4.074 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.128 0.872 40 H 0.111 0.889 41 H 0.134 0.866 42 H 0.059 0.941 43 H 0.094 0.906 44 H 0.081 0.919 45 H 0.057 0.943 46 H 0.006 0.994 47 H -0.004 1.004 48 H 0.070 0.930 49 H 0.125 0.875 50 H 0.115 0.885 51 H 0.130 0.870 52 H 0.072 0.928 53 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -27.338 15.176 -4.008 31.524 hybrid contribution 1.124 -0.147 -0.674 1.319 sum -26.214 15.029 -4.682 30.577 Atomic orbital electron populations 1.21753 0.92752 1.02517 1.02854 1.21139 0.96681 0.96595 0.97334 1.21762 1.00661 0.95436 1.02100 1.22796 0.79670 1.00067 0.98814 1.87941 1.21646 1.78545 1.43397 1.22742 0.93239 0.94226 0.86432 0.88452 1.22875 0.93111 1.00823 1.00351 1.23431 0.97915 0.85491 1.02456 1.62311 0.95532 1.27691 1.28918 1.22969 0.88805 1.02859 0.87172 1.74429 1.03171 1.24693 1.18252 1.73888 1.03382 1.19900 1.19475 1.25382 0.92295 1.01370 0.87858 1.19762 0.82244 0.98700 1.00401 0.88266 1.21579 1.00856 0.96184 0.98895 1.18852 0.94575 0.90268 0.95130 1.21555 0.98274 0.98299 1.38605 0.90340 1.26054 1.03352 0.95014 0.95705 1.70157 1.38534 1.03023 1.46065 0.85441 0.78665 0.77175 0.79388 1.18933 1.21718 1.18522 1.46278 1.04488 1.53649 1.12995 1.22516 1.06581 1.03641 0.74923 1.22996 0.91500 1.02308 0.90607 0.92049 0.91590 0.91693 0.91808 0.93827 0.91938 0.92360 0.92411 0.91678 0.87231 0.88863 0.86642 0.94054 0.90582 0.91862 0.94347 0.99422 1.00378 0.93003 0.87484 0.88479 0.87040 0.92775 0.89119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.19 71.98 0.66 -0.51 16 2 C -0.10 -1.23 3.16 -10.79 -0.03 -1.27 16 3 C -0.14 -1.83 9.09 71.98 0.65 -1.18 16 4 C 0.06 0.79 5.17 71.98 0.37 1.16 16 5 O -0.40 -7.41 9.48 -148.98 -1.41 -8.82 16 6 C 0.09 1.53 3.52 31.49 0.11 1.64 16 7 H 0.10 1.23 7.84 -2.39 -0.02 1.22 16 8 C -0.13 -1.66 6.80 31.49 0.21 -1.44 16 9 C 0.03 0.58 5.88 86.45 0.51 1.09 16 10 N -0.42 -10.65 5.43 -692.07 -3.76 -14.41 16 11 C 0.34 11.76 7.04 260.11 1.83 13.59 16 12 N -0.36 -15.76 11.04 -58.01 -0.64 -16.40 16 13 N -0.33 -15.75 12.18 -49.54 -0.60 -16.35 16 14 C 0.20 8.34 6.58 137.64 0.91 9.24 16 15 C 0.01 0.41 2.70 -11.54 -0.03 0.38 16 16 H 0.10 3.55 6.95 -2.39 -0.02 3.53 16 17 C -0.12 -4.44 8.98 71.98 0.65 -3.79 16 18 C 0.05 2.71 4.43 29.85 0.13 2.85 16 19 C -0.53 -29.12 8.41 25.60 0.22 -28.90 16 20 H 0.08 3.91 7.06 -2.91 -0.02 3.89 16 21 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 22 N -0.94 -58.63 13.29 21.45 0.28 -58.34 16 23 Si 0.97 43.63 29.54 68.60 2.03 45.66 16 24 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 25 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 26 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 27 N -0.48 -15.76 3.21 -538.20 -1.73 -17.49 16 28 C 0.06 1.30 9.65 127.77 1.23 2.53 16 29 C 0.05 1.33 5.80 86.45 0.50 1.83 16 30 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 33 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.04 0.73 7.82 -2.39 -0.02 0.72 16 35 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.06 0.63 8.10 -2.39 -0.02 0.61 16 38 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.09 1.08 7.98 -2.39 -0.02 1.06 16 41 H 0.12 1.40 7.01 -2.39 -0.02 1.38 16 42 H 0.04 0.87 7.97 -2.38 -0.02 0.85 16 43 H 0.08 2.83 6.95 -2.39 -0.02 2.81 16 44 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 45 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 46 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 47 H -0.02 -1.34 8.14 -2.39 -0.02 -1.36 16 48 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 49 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 50 H 0.10 2.00 7.24 -2.39 -0.02 1.99 16 51 H 0.11 1.76 7.76 -2.39 -0.02 1.74 16 52 H 0.05 1.68 7.45 -2.39 -0.02 1.66 16 53 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -79.20 419.79 3.41 -75.79 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: 0.86 Total: 12.90 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: 8.39 Total: -2.53 kcal Atomic # 7 Polarization: -116.55 SS G_CDS: -6.45 Total: -123.00 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: -1.41 Total: -8.82 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -79.20 3.41 -75.79 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646689316.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.192 kcal (2) G-P(sol) polarization free energy of solvation -79.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds