Wall clock time and date at job start Sat Apr 11 2020 04:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.47208 * 2 1 4 4 C 1.36739 * 127.13845 * 84.29731 * 3 2 1 5 5 C 1.50708 * 126.34202 * 0.02562 * 4 3 2 6 6 C 1.53787 * 113.61204 * 219.13716 * 5 4 3 7 7 C 1.53955 * 87.01706 * 220.05037 * 6 5 4 8 8 O 1.42899 * 113.66466 * 139.93611 * 7 6 5 9 9 C 1.53777 * 113.61481 * 121.52992 * 5 4 3 10 10 N 1.30285 * 107.31128 * 179.97438 * 4 3 2 11 11 N 1.28529 * 110.05414 * 0.02562 * 10 4 3 12 12 C 1.31222 * 109.85486 * 359.74001 * 11 10 4 13 13 N 1.38580 * 126.46950 * 180.26168 * 12 11 10 14 14 C 1.46900 * 111.00181 * 257.61865 * 13 12 11 15 15 C 1.50701 * 109.47161 * 54.41925 * 14 13 12 16 16 H 1.08006 * 119.99682 * 4.35984 * 15 14 13 17 17 C 1.37879 * 120.00181 * 184.36288 * 15 14 13 18 18 N 1.31519 * 119.99579 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 119.99931 * 0.02562 * 17 15 14 20 20 H 1.48495 * 109.47198 * 89.99781 * 19 17 15 21 21 H 1.48507 * 109.46943 * 210.00102 * 19 17 15 22 22 H 1.48496 * 109.47173 * 329.99908 * 19 17 15 23 23 C 1.46897 * 111.00344 * 21.57558 * 13 12 11 24 24 C 1.53003 * 109.47169 * 163.71460 * 23 13 12 25 25 C 1.53001 * 109.46650 * 185.72815 * 24 23 13 26 26 C 1.52997 * 109.47491 * 64.99993 * 25 24 23 27 27 C 1.53004 * 109.46784 * 185.00299 * 25 24 23 28 28 H 1.08997 * 109.47318 * 62.61595 * 1 2 3 29 29 H 1.08997 * 109.47069 * 182.61503 * 1 2 3 30 30 H 1.08998 * 109.46991 * 302.61408 * 1 2 3 31 31 H 1.09004 * 109.46663 * 240.00117 * 2 1 3 32 32 H 1.09003 * 109.47265 * 120.00416 * 2 1 3 33 33 H 1.08995 * 112.85143 * 350.32695 * 5 4 3 34 34 H 1.09005 * 113.61440 * 334.56680 * 6 5 4 35 35 H 1.09004 * 113.61483 * 105.46963 * 6 5 4 36 36 H 1.09001 * 113.53282 * 270.80853 * 7 6 5 37 37 H 0.96694 * 114.00218 * 82.43692 * 8 7 6 38 38 H 1.08994 * 113.61878 * 254.52793 * 9 5 4 39 39 H 1.09001 * 113.61276 * 25.43072 * 9 5 4 40 40 H 1.08997 * 109.47685 * 174.42471 * 14 13 12 41 41 H 1.09000 * 109.46960 * 294.42201 * 14 13 12 42 42 H 0.96999 * 119.99348 * 179.97438 * 18 17 15 43 43 H 1.09002 * 109.46755 * 283.71188 * 23 13 12 44 44 H 1.08993 * 109.47373 * 43.70798 * 23 13 12 45 45 H 1.08991 * 109.47267 * 305.72587 * 24 23 13 46 46 H 1.09000 * 109.47193 * 65.72919 * 24 23 13 47 47 H 1.09001 * 109.47385 * 304.99430 * 25 24 23 48 48 H 1.09008 * 109.46681 * 59.99643 * 26 25 24 49 49 H 1.08996 * 109.47442 * 179.97438 * 26 25 24 50 50 H 1.08998 * 109.47055 * 300.00078 * 26 25 24 51 51 H 1.08995 * 109.47431 * 59.99561 * 27 25 24 52 52 H 1.08996 * 109.47183 * 180.02562 * 27 25 24 53 53 H 1.09007 * 109.46855 * 299.99562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1914 2.1956 1.0847 5 6 1.9137 1.8393 2.5224 6 6 1.2856 2.9866 3.3312 7 6 2.1945 2.5554 4.4965 8 8 2.7550 3.6512 5.2226 9 6 3.1428 1.9686 3.4376 10 7 2.6419 3.3363 0.6450 11 7 2.7638 3.2986 -0.6339 12 6 2.3998 2.1201 -1.0818 13 7 2.4001 1.7053 -2.4041 14 6 1.0416 1.7254 -2.9625 15 6 0.4402 3.0940 -2.7718 16 1 1.0343 3.8906 -2.3486 17 6 -0.8682 3.3292 -3.1374 18 7 -1.3930 4.5235 -2.9705 19 14 -1.8958 1.9512 -3.8685 20 1 -2.5922 1.2214 -2.7789 21 1 -2.8995 2.5237 -4.8014 22 1 -1.0125 1.0132 -4.6067 23 6 3.3137 2.5237 -3.2124 24 6 3.6023 1.8107 -4.5350 25 6 4.6623 2.5916 -5.3145 26 6 5.9839 2.5661 -4.5441 27 6 4.8606 1.9494 -6.6890 28 1 -0.3634 0.4727 -0.9125 29 1 -0.3633 -1.0266 0.0469 30 1 -0.3633 0.5539 0.8656 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8900 33 1 1.3876 0.8907 2.6294 34 1 1.5190 3.9764 2.9386 35 1 0.2229 2.8493 3.5310 36 1 1.7443 1.8032 5.1443 37 1 2.1633 4.0244 5.8901 38 1 3.5772 1.0108 3.7233 39 1 3.8848 2.6795 3.0742 40 1 1.0824 1.4914 -4.0263 41 1 0.4275 0.9842 -2.4509 42 1 -2.3134 4.6891 -3.2281 43 1 2.8530 3.4908 -3.4140 44 1 4.2464 2.6720 -2.6684 45 1 3.9682 0.8041 -4.3328 46 1 2.6870 1.7532 -5.1241 47 1 4.3345 3.6236 -5.4397 48 1 6.3116 1.5340 -4.4191 49 1 6.7391 3.1220 -5.0997 50 1 5.8425 3.0236 -3.5650 51 1 3.9191 1.9675 -7.2379 52 1 5.6161 2.5053 -7.2442 53 1 5.1885 0.9173 -6.5639 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646710180.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:54:29 Heat of formation + Delta-G solvation = 21.052909 kcal Electronic energy + Delta-G solvation = -31105.258178 eV Core-core repulsion = 27205.957644 eV Total energy + Delta-G solvation = -3899.300533 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.227 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.85112 -40.15754 -39.20024 -36.95057 -36.51967 -35.88719 -34.61038 -31.48303 -31.11371 -30.62333 -28.48613 -27.98664 -26.71423 -26.30725 -24.87641 -24.66074 -23.66094 -21.92513 -21.18608 -20.76649 -20.10158 -19.15173 -18.73018 -17.87940 -17.36535 -16.95657 -16.54853 -16.30906 -16.15673 -15.95471 -15.53573 -15.19366 -14.95095 -14.62418 -14.58471 -14.50731 -13.95532 -13.77496 -13.61613 -13.45449 -13.33952 -13.12806 -13.06207 -12.97032 -12.73453 -12.66597 -12.46704 -12.37172 -12.26560 -12.17621 -12.07663 -11.98388 -11.76516 -11.59147 -11.47342 -11.41494 -11.32966 -11.19557 -10.91735 -10.83228 -10.73120 -10.29633 -9.17833 -8.33477 -6.40828 0.91460 1.26796 1.30311 1.41189 1.49668 1.99880 2.27507 2.96551 3.02200 3.19850 3.48638 3.59753 3.77224 3.79211 3.92803 3.95126 3.97596 4.02963 4.06756 4.10174 4.24310 4.30831 4.36087 4.41321 4.56631 4.61991 4.68979 4.73902 4.76721 4.78945 4.81711 4.83422 4.85994 4.90427 4.97306 5.00229 5.02139 5.06330 5.11491 5.16621 5.19221 5.25954 5.27557 5.36168 5.39189 5.47027 5.51770 5.55174 5.79212 5.90126 6.19478 6.47737 6.71770 6.99226 7.23267 7.96535 8.83821 Molecular weight = 336.23amu Principal moments of inertia in cm(-1) A = 0.009223 B = 0.004261 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3035.225669 B = 6569.583489 C = 8336.276136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.472 5.472 4 C 0.183 3.817 5 C -0.022 4.022 6 C -0.160 4.160 7 C 0.097 3.903 8 O -0.580 6.580 9 C -0.112 4.112 10 N -0.333 5.333 11 N -0.369 5.369 12 C 0.386 3.614 13 N -0.447 5.447 14 C 0.168 3.832 15 C -0.551 4.551 16 H 0.035 0.965 17 C 0.013 3.987 18 N -0.947 5.947 19 Si 0.942 3.058 20 H -0.262 1.262 21 H -0.286 1.286 22 H -0.234 1.234 23 C 0.083 3.917 24 C -0.096 4.096 25 C -0.096 4.096 26 C -0.143 4.143 27 C -0.138 4.138 28 H 0.033 0.967 29 H 0.114 0.886 30 H 0.058 0.942 31 H 0.104 0.896 32 H 0.131 0.869 33 H 0.145 0.855 34 H 0.061 0.939 35 H 0.088 0.912 36 H 0.128 0.872 37 H 0.396 0.604 38 H 0.108 0.892 39 H 0.062 0.938 40 H 0.055 0.945 41 H 0.043 0.957 42 H 0.265 0.735 43 H 0.019 0.981 44 H 0.066 0.934 45 H 0.081 0.919 46 H 0.056 0.944 47 H 0.052 0.948 48 H 0.065 0.935 49 H 0.065 0.935 50 H 0.038 0.962 51 H 0.051 0.949 52 H 0.064 0.936 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.089 -16.468 8.716 19.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.020 4.020 3 N -0.166 5.166 4 C -0.086 4.086 5 C -0.043 4.043 6 C -0.199 4.199 7 C 0.038 3.962 8 O -0.388 6.388 9 C -0.151 4.151 10 N -0.171 5.171 11 N -0.212 5.212 12 C 0.028 3.972 13 N -0.170 5.170 14 C 0.042 3.958 15 C -0.590 4.590 16 H 0.053 0.947 17 C -0.185 4.185 18 N -0.587 5.587 19 Si 0.764 3.236 20 H -0.187 1.187 21 H -0.212 1.212 22 H -0.157 1.157 23 C -0.044 4.044 24 C -0.134 4.134 25 C -0.115 4.115 26 C -0.200 4.200 27 C -0.195 4.195 28 H 0.052 0.948 29 H 0.133 0.867 30 H 0.077 0.923 31 H 0.122 0.878 32 H 0.149 0.851 33 H 0.163 0.837 34 H 0.080 0.920 35 H 0.106 0.894 36 H 0.146 0.854 37 H 0.246 0.754 38 H 0.126 0.874 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.074 0.926 43 H 0.038 0.962 44 H 0.085 0.915 45 H 0.100 0.900 46 H 0.075 0.925 47 H 0.071 0.929 48 H 0.084 0.916 49 H 0.084 0.916 50 H 0.057 0.943 51 H 0.070 0.930 52 H 0.083 0.917 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.116 -15.581 8.252 19.410 hybrid contribution -2.179 0.484 -0.375 2.264 sum 5.937 -15.097 7.877 18.033 Atomic orbital electron populations 1.22259 0.94081 1.04612 1.01909 1.22187 0.95665 0.77391 1.06747 1.46417 1.50213 1.14880 1.05111 1.24997 1.03154 0.88049 0.92371 1.20983 1.00218 1.01523 0.81530 1.23742 1.00897 0.97878 0.97335 1.23352 0.93229 0.89152 0.90488 1.86514 1.46341 1.50508 1.55482 1.23068 0.95795 1.02274 0.93947 1.73692 1.19491 1.20359 1.03597 1.74532 1.26656 1.16152 1.03863 1.22535 0.98524 0.86849 0.89306 1.59376 1.11316 1.50605 0.95715 1.20292 0.83944 0.95169 0.96434 1.21882 0.98084 0.97083 1.41967 0.94713 1.25928 0.99025 0.98111 0.95434 1.70131 1.15089 1.24130 1.49392 0.85808 0.78959 0.79563 0.79273 1.18696 1.21165 1.15658 1.21922 0.93916 0.94326 0.94240 1.21562 0.98894 0.99649 0.93284 1.21060 0.95218 0.99093 0.96142 1.21842 0.96440 1.02324 0.99390 1.21759 1.01744 1.01148 0.94838 0.94818 0.86746 0.92294 0.87794 0.85075 0.83719 0.92046 0.89362 0.85447 0.75404 0.87373 0.91896 0.92754 0.93900 0.92650 0.96229 0.91544 0.90037 0.92540 0.92948 0.91602 0.91643 0.94335 0.93019 0.91670 0.91562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.21 10.19 71.98 0.73 -3.48 16 2 C 0.10 2.46 6.39 86.38 0.55 3.01 16 3 N -0.47 -17.17 2.81 -514.85 -1.45 -18.62 16 4 C 0.18 6.81 7.11 137.64 0.98 7.78 16 5 C -0.02 -0.54 4.05 -11.01 -0.04 -0.58 16 6 C -0.16 -4.00 7.47 31.18 0.23 -3.76 16 7 C 0.10 1.76 5.21 31.18 0.16 1.93 16 8 O -0.58 -12.34 13.67 -148.98 -2.04 -14.38 16 9 C -0.11 -2.47 7.46 31.12 0.23 -2.24 16 10 N -0.33 -15.91 11.83 -49.54 -0.59 -16.50 16 11 N -0.37 -19.21 10.75 -58.00 -0.62 -19.83 16 12 C 0.39 17.41 5.65 260.11 1.47 18.88 16 13 N -0.45 -18.88 4.66 -710.37 -3.31 -22.19 16 14 C 0.17 7.70 4.11 85.56 0.35 8.06 16 15 C -0.55 -32.08 8.14 25.60 0.21 -31.87 16 16 H 0.03 2.40 6.47 -2.91 -0.02 2.38 16 17 C 0.01 0.76 5.47 84.65 0.46 1.22 16 18 N -0.95 -61.15 13.96 21.45 0.30 -60.85 16 19 Si 0.94 42.52 27.38 68.60 1.88 44.40 16 20 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 21 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 22 H -0.23 -9.35 6.67 99.48 0.66 -8.69 16 23 C 0.08 3.43 4.22 86.30 0.36 3.79 16 24 C -0.10 -3.07 4.64 30.60 0.14 -2.92 16 25 C -0.10 -2.63 2.92 -10.79 -0.03 -2.66 16 26 C -0.14 -3.54 8.96 71.98 0.64 -2.90 16 27 C -0.14 -2.98 9.19 71.98 0.66 -2.31 16 28 H 0.03 1.12 5.93 -2.39 -0.01 1.11 16 29 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.10 2.45 8.09 -2.38 -0.02 2.43 16 32 H 0.13 1.99 7.77 -2.39 -0.02 1.97 16 33 H 0.15 2.33 7.55 -2.39 -0.02 2.31 16 34 H 0.06 2.11 7.81 -2.38 -0.02 2.09 16 35 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 36 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.40 4.57 9.12 -74.06 -0.68 3.89 16 38 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.06 1.89 8.09 -2.39 -0.02 1.87 16 40 H 0.05 2.40 5.90 -2.39 -0.01 2.39 16 41 H 0.04 1.87 4.92 -2.39 -0.01 1.85 16 42 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 43 H 0.02 0.98 6.80 -2.39 -0.02 0.96 16 44 H 0.07 2.73 6.03 -2.39 -0.01 2.71 16 45 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 46 H 0.06 1.91 6.84 -2.39 -0.02 1.90 16 47 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 48 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 49 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 50 H 0.04 1.10 6.45 -2.39 -0.02 1.09 16 51 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 52 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 53 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 Total: -1.00 -86.57 410.90 1.48 -85.09 By element: Atomic # 1 Polarization: 30.77 SS G_CDS: 0.18 Total: 30.95 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: 7.12 Total: -8.06 kcal Atomic # 7 Polarization: -132.33 SS G_CDS: -5.66 Total: -138.00 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: -2.04 Total: -14.38 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 1.88 Total: 44.40 kcal Total: -86.57 1.48 -85.09 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646710180.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.140 kcal (2) G-P(sol) polarization free energy of solvation -86.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds