Wall clock time and date at job start Sat Apr 11 2020 04:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53010 * 109.47175 * 2 1 4 4 C 1.53003 * 109.47256 * 119.99918 * 2 1 3 5 5 N 1.46500 * 109.47040 * 175.24491 * 4 2 1 6 6 C 1.36744 * 127.13546 * 95.33778 * 5 4 2 7 7 C 1.50696 * 126.34829 * 0.02562 * 6 5 4 8 8 C 1.53001 * 109.47144 * 89.99602 * 7 6 5 9 9 H 1.09001 * 109.47394 * 55.00327 * 8 7 6 10 10 C 1.52998 * 109.47315 * 174.99772 * 8 7 6 11 11 O 1.42894 * 109.47428 * 295.00013 * 8 7 6 12 12 N 1.30289 * 107.30348 * 180.26133 * 6 5 4 13 13 N 1.28529 * 110.05357 * 359.56301 * 12 6 5 14 14 C 1.31218 * 109.86110 * 0.44709 * 13 12 6 15 15 N 1.38579 * 126.47273 * 179.72739 * 14 13 12 16 16 C 1.46846 * 111.00240 * 273.90580 * 15 14 13 17 17 C 1.53031 * 109.52454 * 185.84082 * 16 15 14 18 18 C 1.53117 * 109.28101 * 300.82311 * 17 16 15 19 19 C 1.53115 * 109.16294 * 57.64945 * 18 17 16 20 20 H 1.09008 * 109.50127 * 62.29267 * 19 18 17 21 21 C 1.50700 * 109.50705 * 182.40850 * 19 18 17 22 22 H 1.08000 * 119.99976 * 119.80903 * 21 19 18 23 23 C 1.37876 * 119.99808 * 299.80380 * 21 19 18 24 24 N 1.31511 * 119.99975 * 0.02562 * 23 21 19 25 25 Si 1.86802 * 119.99914 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47276 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46816 * 120.00231 * 25 23 21 28 28 H 1.48497 * 109.47206 * 240.00270 * 25 23 21 29 29 C 1.46850 * 111.00155 * 38.11820 * 15 14 13 30 30 H 1.09003 * 109.47472 * 300.00292 * 1 2 3 31 31 H 1.08996 * 109.47425 * 59.99935 * 1 2 3 32 32 H 1.09005 * 109.47198 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47048 * 240.00255 * 2 1 3 34 34 H 1.09001 * 109.46431 * 59.99662 * 3 2 1 35 35 H 1.09000 * 109.47087 * 180.02562 * 3 2 1 36 36 H 1.08996 * 109.46997 * 300.00327 * 3 2 1 37 37 H 1.08995 * 109.46749 * 55.24777 * 4 2 1 38 38 H 1.09003 * 109.46826 * 295.24682 * 4 2 1 39 39 H 1.09001 * 109.47243 * 330.00067 * 7 6 5 40 40 H 1.08995 * 109.47136 * 209.99726 * 7 6 5 41 41 H 1.09006 * 109.46995 * 60.00403 * 10 8 7 42 42 H 1.08998 * 109.47599 * 180.02562 * 10 8 7 43 43 H 1.08996 * 109.47663 * 300.00727 * 10 8 7 44 44 H 0.96697 * 114.00658 * 179.97438 * 11 8 7 45 45 H 1.09002 * 109.46038 * 305.85972 * 16 15 14 46 46 H 1.09001 * 109.46158 * 65.82298 * 16 15 14 47 47 H 1.08996 * 109.50670 * 180.88056 * 17 16 15 48 48 H 1.08996 * 109.53722 * 60.78070 * 17 16 15 49 49 H 1.09006 * 109.52106 * 297.74612 * 18 17 16 50 50 H 1.08997 * 109.52658 * 177.56390 * 18 17 16 51 51 H 0.97005 * 119.99743 * 179.97438 * 24 23 21 52 52 H 1.09004 * 109.45881 * 294.17532 * 29 15 14 53 53 H 1.09000 * 109.45846 * 54.15092 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5005 -0.8212 1.1933 6 6 4.4084 0.0260 1.7659 7 6 4.0939 1.2524 2.5832 8 6 3.9790 0.8659 4.0591 9 1 4.8898 0.3562 4.3733 10 6 3.7837 2.1272 4.9029 11 8 2.8601 -0.0047 4.2379 12 7 5.5959 -0.4208 1.4694 13 7 5.5007 -1.4895 0.7618 14 6 4.2370 -1.7789 0.5592 15 7 3.7436 -2.8540 -0.1626 16 6 3.6518 -2.5306 -1.5921 17 6 2.9703 -3.6824 -2.3343 18 6 3.7827 -4.9645 -2.1331 19 6 3.9045 -5.2524 -0.6342 20 1 2.9126 -5.4187 -0.2139 21 6 4.7527 -6.4803 -0.4249 22 1 5.6675 -6.4139 0.1454 23 6 4.3610 -7.6885 -0.9615 24 7 3.2473 -7.7692 -1.6563 25 14 5.4128 -9.2104 -0.7026 26 1 6.6056 -8.8558 0.1076 27 1 4.6203 -10.2443 0.0102 28 1 5.8482 -9.7410 -2.0194 29 6 4.5589 -4.0552 0.0588 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8932 -0.5138 -0.8900 34 1 1.6765 1.9563 0.8900 35 1 3.1300 1.4426 -0.0005 36 1 1.6766 1.9564 -0.8899 37 1 1.6088 -1.7213 1.2928 38 1 1.7478 -0.1605 2.1372 39 1 3.1507 1.6819 2.2457 40 1 4.8914 1.9851 2.4606 41 1 2.8728 2.6370 4.5889 42 1 3.7023 1.8519 5.9544 43 1 4.6371 2.7913 4.7666 44 1 2.7264 -0.2910 5.1518 45 1 3.0681 -1.6192 -1.7215 46 1 4.6533 -2.3806 -1.9955 47 1 2.9164 -3.4488 -3.3976 48 1 1.9636 -3.8242 -1.9414 49 1 4.7770 -4.8368 -2.5614 50 1 3.2779 -5.7965 -2.6241 51 1 2.9719 -8.6191 -2.0341 52 1 5.5561 -3.8980 -0.3524 53 1 4.6338 -4.2511 1.1284 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646856512.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:54:48 Heat of formation + Delta-G solvation = -8.319150 kcal Electronic energy + Delta-G solvation = -31424.382535 eV Core-core repulsion = 27523.808334 eV Total energy + Delta-G solvation = -3900.574201 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.227 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.04603 -39.97031 -38.66531 -37.88451 -35.78228 -34.29818 -34.05752 -33.09771 -31.85555 -30.65227 -28.30113 -27.84116 -27.47091 -27.03132 -25.38117 -23.40412 -22.95183 -22.51313 -21.76586 -20.81465 -20.32131 -18.82827 -18.40544 -17.96197 -17.40031 -17.07148 -16.55336 -16.23195 -15.91765 -15.79076 -15.39981 -15.24503 -14.90214 -14.62146 -14.52629 -14.30593 -14.12847 -13.89623 -13.61413 -13.55061 -13.34902 -13.07097 -12.89467 -12.88678 -12.86132 -12.74291 -12.62020 -12.60591 -12.42139 -12.05913 -12.02230 -11.89710 -11.84032 -11.72133 -11.50936 -11.38362 -11.09460 -10.95375 -10.89262 -10.77864 -10.41995 -10.25354 -9.51383 -8.11181 -6.24240 0.74547 1.30803 1.39412 1.41750 1.53390 1.77126 2.41678 2.76950 3.16313 3.17944 3.38534 3.65197 3.73242 3.80957 3.92531 4.01688 4.06883 4.12400 4.13779 4.25933 4.26807 4.35276 4.41532 4.47159 4.56397 4.58187 4.67210 4.72033 4.76373 4.78855 4.80324 4.87073 4.92673 4.94998 4.96776 4.99041 5.05301 5.10118 5.11287 5.19438 5.26423 5.33784 5.37439 5.39962 5.42973 5.61083 5.67909 5.76080 5.97435 6.10181 6.34528 6.36658 6.84121 6.85110 7.43128 7.72984 8.93994 Molecular weight = 336.23amu Principal moments of inertia in cm(-1) A = 0.014597 B = 0.003289 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.770414 B = 8510.405220 C = 9440.744100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 C -0.146 4.146 4 C 0.115 3.885 5 N -0.446 5.446 6 C 0.197 3.803 7 C -0.028 4.028 8 C 0.107 3.893 9 H 0.043 0.957 10 C -0.173 4.173 11 O -0.583 6.583 12 N -0.333 5.333 13 N -0.359 5.359 14 C 0.346 3.654 15 N -0.459 5.459 16 C 0.077 3.923 17 C -0.103 4.103 18 C -0.105 4.105 19 C 0.061 3.939 20 H 0.007 0.993 21 C -0.539 4.539 22 H 0.044 0.956 23 C 0.022 3.978 24 N -0.909 5.909 25 Si 0.953 3.047 26 H -0.274 1.274 27 H -0.277 1.277 28 H -0.277 1.277 29 C 0.105 3.895 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.033 0.967 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.123 0.877 39 H 0.112 0.888 40 H 0.126 0.874 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.394 0.606 45 H 0.087 0.913 46 H 0.028 0.972 47 H 0.083 0.917 48 H 0.065 0.935 49 H 0.023 0.977 50 H 0.070 0.930 51 H 0.263 0.737 52 H 0.024 0.976 53 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.120 23.876 8.601 26.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 C -0.203 4.203 4 C -0.006 4.006 5 N -0.138 5.138 6 C -0.072 4.072 7 C -0.067 4.067 8 C 0.047 3.953 9 H 0.061 0.939 10 C -0.231 4.231 11 O -0.392 6.392 12 N -0.173 5.173 13 N -0.203 5.203 14 C -0.012 4.012 15 N -0.184 5.184 16 C -0.050 4.050 17 C -0.141 4.141 18 C -0.144 4.144 19 C 0.042 3.958 20 H 0.026 0.974 21 C -0.578 4.578 22 H 0.063 0.937 23 C -0.178 4.178 24 N -0.548 5.548 25 Si 0.778 3.222 26 H -0.198 1.198 27 H -0.203 1.203 28 H -0.202 1.202 29 C -0.022 4.022 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.053 0.947 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.141 0.859 39 H 0.130 0.870 40 H 0.144 0.856 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.096 0.904 44 H 0.244 0.756 45 H 0.105 0.895 46 H 0.046 0.954 47 H 0.102 0.898 48 H 0.084 0.916 49 H 0.042 0.958 50 H 0.088 0.912 51 H 0.072 0.928 52 H 0.042 0.958 53 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.278 23.636 7.965 25.982 hybrid contribution 0.368 -1.447 0.395 1.544 sum -6.910 22.189 8.360 24.698 Atomic orbital electron populations 1.21704 0.91744 1.02529 1.03459 1.21544 0.98199 0.96950 0.96346 1.21927 0.99825 0.94891 1.03628 1.22235 0.73581 1.03400 1.01403 1.46337 1.09533 1.20135 1.37752 1.25204 0.84796 0.97176 1.00000 1.20506 1.05594 0.89423 0.91184 1.21720 0.88720 0.91401 0.93443 0.93915 1.22395 1.03821 0.96809 1.00040 1.86434 1.49810 1.67927 1.35019 1.73857 1.21648 1.06700 1.15105 1.74542 1.16435 1.11181 1.18169 1.22613 0.86660 0.92126 0.99811 1.58820 1.50427 0.99794 1.09341 1.22185 0.99494 0.99361 0.83920 1.21582 0.99279 0.93740 0.99504 1.21498 0.97550 0.96780 0.98523 1.18577 0.94737 0.89927 0.92600 0.97436 1.21422 1.08051 0.94531 1.33768 0.93738 1.25610 0.96211 1.01296 0.94677 1.69998 1.23236 1.26085 1.35493 0.85588 0.78961 0.79602 0.78003 1.19844 1.20265 1.20248 1.21911 0.93512 0.87738 0.99061 0.90723 0.91000 0.92724 0.92344 0.90199 0.94737 0.91110 0.89949 0.85870 0.87008 0.85581 0.90727 0.91002 0.90374 0.75560 0.89470 0.95408 0.89850 0.91644 0.95822 0.91197 0.92801 0.95795 0.93875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.19 71.98 0.66 -1.25 16 2 C -0.11 -2.07 3.13 -10.79 -0.03 -2.11 16 3 C -0.15 -2.22 7.87 71.99 0.57 -1.65 16 4 C 0.12 2.64 5.36 86.38 0.46 3.10 16 5 N -0.45 -13.43 2.51 -514.86 -1.29 -14.73 16 6 C 0.20 5.67 5.93 137.64 0.82 6.48 16 7 C -0.03 -0.48 4.77 29.85 0.14 -0.34 16 8 C 0.11 1.60 3.57 30.59 0.11 1.71 16 9 H 0.04 0.81 8.14 -2.39 -0.02 0.80 16 10 C -0.17 -1.39 9.53 71.98 0.69 -0.70 16 11 O -0.58 -9.38 11.67 -148.98 -1.74 -11.12 16 12 N -0.33 -12.59 12.18 -49.54 -0.60 -13.20 16 13 N -0.36 -15.55 11.73 -58.01 -0.68 -16.23 16 14 C 0.35 13.43 6.69 260.12 1.74 15.17 16 15 N -0.46 -18.52 4.67 -706.16 -3.30 -21.82 16 16 C 0.08 2.79 5.40 86.32 0.47 3.26 16 17 C -0.10 -3.86 6.09 30.64 0.19 -3.68 16 18 C -0.11 -5.05 5.03 30.67 0.15 -4.90 16 19 C 0.06 3.18 2.26 -11.49 -0.03 3.15 16 20 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 21 C -0.54 -31.05 8.56 25.60 0.22 -30.83 16 22 H 0.04 2.60 7.74 -2.91 -0.02 2.57 16 23 C 0.02 1.21 5.31 84.65 0.45 1.66 16 24 N -0.91 -52.27 11.36 21.45 0.24 -52.03 16 25 Si 0.95 44.70 29.54 68.60 2.03 46.73 16 26 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 27 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 28 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 29 C 0.10 5.03 4.34 86.32 0.37 5.41 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 33 H 0.06 1.36 5.94 -2.39 -0.01 1.34 16 34 H 0.08 0.87 7.22 -2.39 -0.02 0.85 16 35 H 0.03 0.67 6.45 -2.39 -0.02 0.65 16 36 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.12 2.32 6.17 -2.39 -0.01 2.31 16 39 H 0.11 1.47 5.49 -2.39 -0.01 1.45 16 40 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16 42 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 43 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.39 3.60 9.08 -74.06 -0.67 2.92 16 45 H 0.09 2.69 5.90 -2.39 -0.01 2.67 16 46 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 48 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 49 H 0.02 1.15 8.14 -2.38 -0.02 1.13 16 50 H 0.07 3.71 6.16 -2.39 -0.01 3.70 16 51 H 0.26 14.27 8.31 -92.70 -0.77 13.50 16 52 H 0.02 1.22 8.06 -2.38 -0.02 1.20 16 53 H 0.04 2.17 8.10 -2.39 -0.02 2.15 16 Total: -1.00 -73.13 404.75 1.85 -71.28 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 0.22 Total: 16.63 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: 6.97 Total: -5.52 kcal Atomic # 7 Polarization: -112.37 SS G_CDS: -5.63 Total: -118.00 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: -1.74 Total: -11.12 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -73.13 1.85 -71.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646856512.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.964 kcal (2) G-P(sol) polarization free energy of solvation -73.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds