Wall clock time and date at job start Sat Apr 11 2020 04:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46911 * 2 1 4 4 C 1.53000 * 109.46622 * 119.99811 * 2 1 3 5 5 N 1.46507 * 109.46964 * 173.79860 * 4 2 1 6 6 C 1.36732 * 127.13714 * 88.51789 * 5 4 2 7 7 C 1.50701 * 126.34920 * 0.23646 * 6 5 4 8 8 C 1.52998 * 109.47762 * 96.22466 * 7 6 5 9 9 H 1.09004 * 109.46656 * 55.51950 * 8 7 6 10 10 C 1.52992 * 109.47240 * 175.51993 * 8 7 6 11 11 O 1.42903 * 109.46856 * 295.52065 * 8 7 6 12 12 N 1.30291 * 107.30680 * 180.26336 * 6 5 4 13 13 N 1.28531 * 110.05282 * 0.02562 * 12 6 5 14 14 C 1.31216 * 109.85769 * 359.97438 * 13 12 6 15 15 N 1.38585 * 126.47015 * 179.97438 * 14 13 12 16 16 C 1.46847 * 110.99912 * 234.25836 * 15 14 13 17 17 C 1.53033 * 109.52491 * 174.15939 * 16 15 14 18 18 C 1.53124 * 109.27430 * 59.18062 * 17 16 15 19 19 C 1.53119 * 109.16233 * 302.34528 * 18 17 16 20 20 H 1.08998 * 109.50122 * 297.71242 * 19 18 17 21 21 C 1.50696 * 109.50332 * 177.63607 * 19 18 17 22 22 H 1.08003 * 120.00106 * 240.00519 * 21 19 18 23 23 C 1.37884 * 119.99989 * 59.99934 * 21 19 18 24 24 N 1.31507 * 119.99828 * 0.02562 * 23 21 19 25 25 Si 1.86801 * 119.99770 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47389 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47016 * 120.00086 * 25 23 21 28 28 H 1.48504 * 109.46829 * 240.00195 * 25 23 21 29 29 C 1.46844 * 110.99749 * 110.05081 * 15 14 13 30 30 H 1.08999 * 109.47336 * 300.00403 * 1 2 3 31 31 H 1.08999 * 109.47143 * 60.00489 * 1 2 3 32 32 H 1.09001 * 109.47338 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47336 * 239.99597 * 2 1 3 34 34 H 1.08998 * 109.47335 * 302.41894 * 3 2 1 35 35 H 1.09000 * 109.47108 * 62.42185 * 3 2 1 36 36 H 1.09001 * 109.47024 * 182.41928 * 3 2 1 37 37 H 1.09001 * 109.47653 * 53.80014 * 4 2 1 38 38 H 1.09003 * 109.47063 * 293.79197 * 4 2 1 39 39 H 1.09001 * 109.47055 * 216.22728 * 7 6 5 40 40 H 1.09007 * 109.46851 * 336.22007 * 7 6 5 41 41 H 1.09004 * 109.47331 * 60.00371 * 10 8 7 42 42 H 1.09008 * 109.47300 * 179.97438 * 10 8 7 43 43 H 1.09000 * 109.47393 * 299.99763 * 10 8 7 44 44 H 0.96693 * 114.00055 * 304.36947 * 11 8 7 45 45 H 1.08993 * 109.46575 * 294.18045 * 16 15 14 46 46 H 1.09004 * 109.46099 * 54.15869 * 16 15 14 47 47 H 1.08996 * 109.50494 * 179.12234 * 17 16 15 48 48 H 1.09003 * 109.50269 * 299.24141 * 17 16 15 49 49 H 1.09002 * 109.52178 * 62.25401 * 18 17 16 50 50 H 1.09008 * 109.52136 * 182.44117 * 18 17 16 51 51 H 0.97002 * 119.99716 * 179.97438 * 24 23 21 52 52 H 1.08999 * 109.46694 * 305.84990 * 29 15 14 53 53 H 1.09004 * 109.46341 * 65.82383 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.4974 -0.8518 1.1771 6 6 4.4295 0.0455 1.6192 7 6 4.1504 1.3686 2.2846 8 6 4.2203 1.2003 3.8037 9 1 5.1875 0.7793 4.0785 10 6 4.0479 2.5636 4.4763 11 8 3.1787 0.3217 4.2340 12 7 5.6037 -0.4549 1.3579 13 7 5.4779 -1.5984 0.7848 14 6 4.2061 -1.8914 0.6490 15 7 3.6817 -3.0395 0.0767 16 6 2.7323 -2.7076 -0.9933 17 6 2.2858 -3.9910 -1.6971 18 6 1.6280 -4.9243 -0.6769 19 6 2.6212 -5.2155 0.4515 20 1 3.4927 -5.7290 0.0456 21 6 1.9621 -6.0867 1.4895 22 1 1.8666 -5.7366 2.5067 23 6 1.4810 -7.3309 1.1406 24 7 1.5976 -7.7574 -0.0979 25 14 0.6633 -8.4105 2.4273 26 1 0.6576 -7.7053 3.7341 27 1 -0.7333 -8.7009 2.0147 28 1 1.4165 -9.6840 2.5558 29 6 3.0580 -3.8965 1.0930 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.6417 1.9687 -0.8675 35 1 1.7125 1.9436 0.9109 36 1 3.1291 1.4428 -0.0434 37 1 1.5888 -1.7119 1.3066 38 1 1.7701 -0.1472 2.1358 39 1 4.8933 2.0996 1.9655 40 1 3.1559 1.7144 2.0027 41 1 3.0807 2.9846 4.2015 42 1 4.0972 2.4437 5.5586 43 1 4.8424 3.2338 4.1481 44 1 2.2928 0.6000 3.9641 45 1 1.8637 -2.2068 -0.5658 46 1 3.2140 -2.0471 -1.7143 47 1 1.5693 -3.7458 -2.4810 48 1 3.1521 -4.4853 -2.1368 49 1 0.7392 -4.4458 -0.2655 50 1 1.3473 -5.8577 -1.1650 51 1 1.2595 -8.6328 -0.3432 52 1 3.7762 -4.0994 1.8874 53 1 2.1879 -3.3901 1.5108 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646856513.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:54:51 Heat of formation + Delta-G solvation = -0.606906 kcal Electronic energy + Delta-G solvation = -31980.630252 eV Core-core repulsion = 28080.390478 eV Total energy + Delta-G solvation = -3900.239773 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.227 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.13885 -40.18861 -38.95826 -37.88564 -35.79812 -34.31475 -33.97555 -32.99178 -31.90177 -30.73918 -28.66953 -27.90512 -27.44767 -27.07016 -25.16155 -23.47105 -23.20309 -22.62153 -21.90509 -21.08597 -20.39599 -18.88676 -18.25483 -17.68733 -17.28517 -17.19488 -16.58535 -16.41333 -16.05943 -15.95328 -15.46786 -15.11931 -14.94488 -14.82906 -14.54373 -14.39514 -14.25567 -14.13688 -13.68315 -13.56257 -13.17225 -13.09540 -12.91808 -12.89154 -12.78307 -12.71887 -12.63845 -12.58646 -12.44969 -12.06437 -11.99886 -11.96803 -11.80094 -11.61389 -11.54657 -11.41534 -11.24867 -11.09536 -10.92409 -10.78304 -10.44099 -9.98412 -9.68955 -8.11160 -6.25501 0.70244 1.39103 1.39928 1.43017 1.53182 1.78518 2.35047 2.50000 3.16724 3.19802 3.39017 3.52341 3.63768 3.69308 3.84017 3.91416 3.96436 4.00997 4.10311 4.14881 4.26114 4.29128 4.35210 4.36856 4.45550 4.57428 4.63495 4.67586 4.68686 4.73091 4.76572 4.84843 4.87987 4.91832 4.91887 4.95695 4.96662 5.07030 5.14531 5.17239 5.25862 5.30486 5.32560 5.36786 5.41060 5.59973 5.62109 5.75439 5.96604 6.11284 6.31489 6.33262 6.78655 6.84062 7.42679 7.77830 8.93941 Molecular weight = 336.23amu Principal moments of inertia in cm(-1) A = 0.012999 B = 0.003656 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.412691 B = 7657.362725 C = 8148.339722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.118 4.118 3 C -0.149 4.149 4 C 0.096 3.904 5 N -0.480 5.480 6 C 0.201 3.799 7 C -0.067 4.067 8 C 0.107 3.893 9 H 0.077 0.923 10 C -0.172 4.172 11 O -0.580 6.580 12 N -0.334 5.334 13 N -0.321 5.321 14 C 0.347 3.653 15 N -0.461 5.461 16 C 0.062 3.938 17 C -0.110 4.110 18 C -0.100 4.100 19 C 0.057 3.943 20 H -0.005 1.005 21 C -0.536 4.536 22 H 0.050 0.950 23 C 0.021 3.979 24 N -0.911 5.911 25 Si 0.953 3.047 26 H -0.270 1.270 27 H -0.275 1.275 28 H -0.284 1.284 29 C 0.092 3.908 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.040 0.960 37 H 0.081 0.919 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.082 0.918 42 H 0.061 0.939 43 H 0.082 0.918 44 H 0.384 0.616 45 H 0.066 0.934 46 H 0.076 0.924 47 H 0.088 0.912 48 H 0.049 0.951 49 H 0.038 0.962 50 H 0.066 0.934 51 H 0.262 0.738 52 H 0.040 0.960 53 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.932 25.502 2.364 26.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.137 4.137 3 C -0.206 4.206 4 C -0.026 4.026 5 N -0.175 5.175 6 C -0.068 4.068 7 C -0.106 4.106 8 C 0.047 3.953 9 H 0.095 0.905 10 C -0.230 4.230 11 O -0.388 6.388 12 N -0.174 5.174 13 N -0.162 5.162 14 C -0.010 4.010 15 N -0.185 5.185 16 C -0.064 4.064 17 C -0.148 4.148 18 C -0.138 4.138 19 C 0.038 3.962 20 H 0.014 0.986 21 C -0.575 4.575 22 H 0.068 0.932 23 C -0.179 4.179 24 N -0.550 5.550 25 Si 0.779 3.221 26 H -0.194 1.194 27 H -0.200 1.200 28 H -0.210 1.210 29 C -0.034 4.034 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.059 0.941 37 H 0.100 0.900 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.101 0.899 42 H 0.080 0.920 43 H 0.100 0.900 44 H 0.233 0.767 45 H 0.084 0.916 46 H 0.094 0.906 47 H 0.106 0.894 48 H 0.068 0.932 49 H 0.057 0.943 50 H 0.085 0.915 51 H 0.071 0.929 52 H 0.059 0.941 53 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.586 24.605 2.199 24.962 hybrid contribution -2.131 -0.799 0.579 2.348 sum -5.717 23.807 2.778 24.641 Atomic orbital electron populations 1.21766 0.91659 1.02519 1.03967 1.21709 0.98264 0.97624 0.96105 1.22043 1.00257 0.94290 1.04048 1.22536 0.74444 1.03522 1.02097 1.47487 1.09391 1.16331 1.44315 1.25141 0.84893 0.96363 1.00368 1.21328 1.06691 0.87702 0.94898 1.21923 0.91252 0.91683 0.90439 0.90508 1.22380 1.04311 0.95045 1.01225 1.86709 1.18887 1.53043 1.80149 1.73994 1.22249 1.04280 1.16910 1.74365 1.14270 1.09306 1.18242 1.23176 0.89208 0.88717 0.99873 1.59038 1.38595 1.09180 1.11728 1.22534 0.93364 0.98462 0.92050 1.21628 1.00269 0.94658 0.98213 1.21461 0.97238 0.98837 0.96309 1.18586 0.94102 0.89562 0.93964 0.98632 1.21387 1.38764 1.01697 0.95631 0.93191 1.25641 0.96389 0.98746 0.97119 1.70017 1.46950 1.19589 1.18404 0.85579 0.78344 0.78598 0.79560 1.19406 1.20008 1.20994 1.22133 0.95341 0.94087 0.91847 0.90203 0.90695 0.93097 0.91558 0.90831 0.89573 0.94097 0.90050 0.85834 0.85988 0.85998 0.89934 0.91989 0.89960 0.76672 0.91566 0.90600 0.89379 0.93216 0.94307 0.91542 0.92866 0.94126 0.94184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.19 71.98 0.66 -0.98 16 2 C -0.12 -1.82 2.39 -10.79 -0.03 -1.84 16 3 C -0.15 -1.67 7.59 71.98 0.55 -1.12 16 4 C 0.10 1.91 4.32 86.38 0.37 2.29 16 5 N -0.48 -13.49 2.66 -514.84 -1.37 -14.85 16 6 C 0.20 5.48 5.91 137.64 0.81 6.29 16 7 C -0.07 -1.00 4.43 29.85 0.13 -0.87 16 8 C 0.11 1.70 3.58 30.59 0.11 1.81 16 9 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 10 C -0.17 -1.50 9.56 71.98 0.69 -0.81 16 11 O -0.58 -10.95 12.87 -148.98 -1.92 -12.87 16 12 N -0.33 -12.37 12.18 -49.54 -0.60 -12.97 16 13 N -0.32 -13.75 12.23 -58.01 -0.71 -14.46 16 14 C 0.35 13.19 6.66 260.11 1.73 14.93 16 15 N -0.46 -18.44 4.70 -706.16 -3.32 -21.76 16 16 C 0.06 2.05 4.01 86.32 0.35 2.39 16 17 C -0.11 -3.99 6.09 30.65 0.19 -3.80 16 18 C -0.10 -4.50 5.02 30.68 0.15 -4.35 16 19 C 0.06 2.88 2.26 -11.49 -0.03 2.86 16 20 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 21 C -0.54 -29.41 8.57 25.60 0.22 -29.19 16 22 H 0.05 2.72 7.75 -2.91 -0.02 2.69 16 23 C 0.02 1.13 5.30 84.66 0.45 1.58 16 24 N -0.91 -51.75 11.35 21.45 0.24 -51.51 16 25 Si 0.95 43.16 29.54 68.60 2.03 45.19 16 26 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 27 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 28 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 29 C 0.09 4.08 4.48 86.33 0.39 4.47 16 30 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.07 1.33 5.52 -2.39 -0.01 1.32 16 34 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.09 0.48 6.88 -2.39 -0.02 0.46 16 36 H 0.04 0.62 6.00 -2.39 -0.01 0.61 16 37 H 0.08 2.01 4.92 -2.39 -0.01 2.00 16 38 H 0.12 1.62 6.28 -2.39 -0.01 1.61 16 39 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.12 1.02 4.56 -2.38 -0.01 1.01 16 41 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 42 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 43 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.38 3.75 7.78 -74.06 -0.58 3.17 16 45 H 0.07 1.89 3.99 -2.39 -0.01 1.88 16 46 H 0.08 2.34 7.92 -2.38 -0.02 2.33 16 47 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 48 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 49 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 50 H 0.07 3.41 6.15 -2.38 -0.01 3.40 16 51 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 52 H 0.04 1.97 8.10 -2.39 -0.02 1.95 16 53 H 0.04 1.64 5.94 -2.39 -0.01 1.62 16 Total: -1.00 -74.91 392.15 1.44 -73.47 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: 0.34 Total: 16.12 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: 6.75 Total: -6.36 kcal Atomic # 7 Polarization: -109.79 SS G_CDS: -5.76 Total: -115.55 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: -1.92 Total: -12.87 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -74.91 1.44 -73.47 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646856513.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.867 kcal (2) G-P(sol) polarization free energy of solvation -74.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds