Wall clock time and date at job start Sat Apr 11 2020 04:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46506 * 109.46784 * 2 1 4 4 C 1.30981 * 119.99948 * 120.00287 * 3 2 1 5 5 N 1.34563 * 119.90126 * 359.72170 * 4 3 2 6 6 C 1.31509 * 121.25744 * 179.75166 * 5 4 3 7 7 N 1.36672 * 119.52010 * 180.26702 * 6 5 4 8 8 C 1.46500 * 120.00213 * 185.77658 * 7 6 5 9 9 C 1.53005 * 109.46816 * 54.85920 * 8 7 6 10 10 C 1.53002 * 109.47115 * 174.85984 * 8 7 6 11 11 C 1.52995 * 109.47011 * 294.86024 * 8 7 6 12 12 N 1.36957 * 120.96430 * 0.52662 * 6 5 4 13 13 H 0.96994 * 120.14357 * 179.75814 * 12 6 5 14 14 C 1.38091 * 119.70805 * 359.74064 * 12 6 5 15 15 N 1.30238 * 120.59047 * 179.97438 * 14 12 6 16 16 C 1.46496 * 119.99859 * 173.80565 * 15 14 12 17 17 C 1.53007 * 109.46781 * 114.38972 * 16 15 14 18 18 C 1.52995 * 109.47042 * 300.00003 * 17 16 15 19 19 C 1.52998 * 109.47083 * 60.00135 * 17 16 15 20 20 C 1.50701 * 109.46808 * 179.97438 * 17 16 15 21 21 H 1.07995 * 120.00661 * 0.02562 * 20 17 16 22 22 C 1.37884 * 119.99832 * 180.02562 * 20 17 16 23 23 N 1.31510 * 119.99732 * 359.97438 * 22 20 17 24 24 Si 1.86798 * 120.00207 * 180.02562 * 22 20 17 25 25 H 1.48495 * 109.47262 * 89.99302 * 24 22 20 26 26 H 1.48495 * 109.47035 * 209.99758 * 24 22 20 27 27 H 1.48502 * 109.46896 * 329.99730 * 24 22 20 28 28 N 1.38045 * 118.81952 * 359.97438 * 14 12 6 29 29 H 0.96996 * 120.47142 * 179.97438 * 28 14 12 30 30 H 1.08997 * 109.47132 * 59.99758 * 1 2 3 31 31 H 1.08995 * 109.47051 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46845 * 300.00209 * 1 2 3 33 33 H 1.08998 * 109.46783 * 119.99832 * 2 1 3 34 34 H 1.09003 * 109.46634 * 240.00292 * 2 1 3 35 35 H 0.97000 * 120.00097 * 5.77384 * 7 6 5 36 36 H 1.08997 * 109.46934 * 67.84949 * 9 8 7 37 37 H 1.09000 * 109.46672 * 187.84692 * 9 8 7 38 38 H 1.08994 * 109.46880 * 307.84787 * 9 8 7 39 39 H 1.08994 * 109.47152 * 60.00147 * 10 8 7 40 40 H 1.09002 * 109.46483 * 179.97438 * 10 8 7 41 41 H 1.08995 * 109.47027 * 299.99987 * 10 8 7 42 42 H 1.09000 * 109.47234 * 64.59442 * 11 8 7 43 43 H 1.09001 * 109.47190 * 184.59359 * 11 8 7 44 44 H 1.09003 * 109.47416 * 304.59788 * 11 8 7 45 45 H 1.09001 * 109.47569 * 234.38804 * 16 15 14 46 46 H 1.08994 * 109.47650 * 354.39248 * 16 15 14 47 47 H 1.09001 * 109.47608 * 60.00046 * 18 17 16 48 48 H 1.09004 * 109.46861 * 180.02562 * 18 17 16 49 49 H 1.09006 * 109.47035 * 299.99863 * 18 17 16 50 50 H 1.09000 * 109.47385 * 59.99732 * 19 17 16 51 51 H 1.08999 * 109.47064 * 179.97438 * 19 17 16 52 52 H 1.09000 * 109.47294 * 299.99755 * 19 17 16 53 53 H 0.97002 * 119.99909 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.7714 1.8097 0.9823 5 7 3.0907 0.9811 1.9933 6 6 3.8488 1.3817 2.9905 7 7 4.1555 0.5086 3.9962 8 6 4.8917 0.9764 5.1733 9 6 4.1545 2.1629 5.7975 10 6 4.9918 -0.1572 6.1960 11 6 6.2976 1.4120 4.7555 12 7 4.3311 2.6627 3.0385 13 1 4.8864 2.9465 3.7814 14 6 4.0237 3.5481 2.0244 15 7 4.4727 4.7703 2.0530 16 6 4.2537 5.6580 0.9084 17 6 3.3335 6.8078 1.3234 18 6 1.9921 6.2428 1.7945 19 6 3.9836 7.5955 2.4626 20 6 3.1088 7.7213 0.1461 21 1 3.5752 7.5034 -0.8033 22 6 2.3076 8.8354 0.2810 23 7 1.7393 9.1004 1.4369 24 14 2.0285 9.9674 -1.1785 25 1 0.8382 9.5097 -1.9393 26 1 1.8038 11.3530 -0.6943 27 1 3.2216 9.9391 -2.0621 28 7 3.2319 3.1148 0.9799 29 1 3.0009 3.7167 0.2553 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8901 35 1 3.8857 -0.4208 3.9308 36 1 3.2095 1.8219 6.2202 37 1 4.7688 2.5985 6.5856 38 1 3.9601 2.9136 5.0315 39 1 5.5169 -1.0024 5.7513 40 1 5.5399 0.1908 7.0715 41 1 3.9902 -0.4675 6.4935 42 1 6.2287 2.2725 4.0901 43 1 6.8723 1.6829 5.6413 44 1 6.7935 0.5911 4.2376 45 1 5.2094 6.0606 0.5727 46 1 3.7906 5.0969 0.0967 47 1 2.1549 5.5822 2.6462 48 1 1.3364 7.0619 2.0898 49 1 1.5290 5.6816 0.9828 50 1 4.9393 7.9980 2.1270 51 1 3.3282 8.4148 2.7580 52 1 4.1465 6.9350 3.3143 53 1 1.1753 9.8840 1.5317 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413412229.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:52:53 Heat of formation + Delta-G solvation = 105.878924 kcal Electronic energy + Delta-G solvation = -30917.175726 eV Core-core repulsion = 27053.846275 eV Total energy + Delta-G solvation = -3863.329450 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.233 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.39597 -38.91868 -36.96848 -35.81168 -34.81516 -33.34424 -32.48661 -31.20479 -30.26090 -29.23748 -28.01259 -27.85579 -25.74305 -25.48054 -24.98799 -23.57355 -22.61084 -20.96775 -20.49310 -19.15436 -18.64325 -18.57296 -17.23899 -16.40677 -15.97490 -15.92042 -15.62742 -14.95040 -14.83310 -14.67925 -14.44924 -14.02288 -14.01118 -13.42500 -13.07657 -12.85647 -12.78730 -12.61020 -12.51516 -12.32531 -12.28083 -12.08786 -11.87172 -11.62350 -11.50490 -11.42234 -11.18932 -11.14150 -10.95034 -10.77677 -10.61550 -10.33550 -10.22540 -10.07487 -9.58706 -9.47791 -9.30068 -9.05535 -8.84717 -8.53682 -8.27533 -7.81679 -7.56654 -5.91092 -4.02322 1.51658 2.09490 2.53362 2.84425 3.18484 3.33515 3.40219 3.43366 3.93062 4.07094 4.28490 4.39047 4.45885 4.72599 5.01776 5.02940 5.08673 5.15959 5.18172 5.26317 5.32097 5.34439 5.36628 5.52259 5.54391 5.63533 5.75387 5.76085 5.81569 5.95470 6.06212 6.12692 6.32270 6.46020 6.49520 6.52242 6.60357 6.78985 6.87403 6.91220 7.11947 7.13420 7.17938 7.34663 7.41895 7.52069 7.73643 7.79731 8.15408 8.26162 8.32563 8.39937 8.53050 8.74088 8.98828 9.63022 11.09227 Molecular weight = 336.23amu Principal moments of inertia in cm(-1) A = 0.011172 B = 0.003493 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.664500 B = 8014.387730 C = 9844.896183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.071 3.929 3 N -0.604 5.604 4 C 0.569 3.431 5 N -0.643 5.643 6 C 0.675 3.325 7 N -0.692 5.692 8 C 0.157 3.843 9 C -0.185 4.185 10 C -0.150 4.150 11 C -0.176 4.176 12 N -0.659 5.659 13 H 0.429 0.571 14 C 0.573 3.427 15 N -0.575 5.575 16 C 0.082 3.918 17 C 0.073 3.927 18 C -0.125 4.125 19 C -0.118 4.118 20 C -0.510 4.510 21 H 0.054 0.946 22 C 0.067 3.933 23 N -0.884 5.884 24 Si 0.890 3.110 25 H -0.281 1.281 26 H -0.287 1.287 27 H -0.275 1.275 28 N -0.683 5.683 29 H 0.432 0.568 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.047 0.953 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.424 0.576 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.080 0.920 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.025 0.975 47 H 0.005 0.995 48 H 0.082 0.918 49 H 0.018 0.982 50 H 0.020 0.980 51 H 0.076 0.924 52 H 0.017 0.983 53 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.142 -20.279 11.259 24.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.060 4.060 3 N -0.338 5.338 4 C 0.200 3.800 5 N -0.393 5.393 6 C 0.311 3.689 7 N -0.333 5.333 8 C 0.071 3.929 9 C -0.244 4.244 10 C -0.208 4.208 11 C -0.235 4.235 12 N -0.308 5.308 13 H 0.277 0.723 14 C 0.206 3.794 15 N -0.307 5.307 16 C -0.047 4.047 17 C 0.072 3.928 18 C -0.183 4.183 19 C -0.176 4.176 20 C -0.548 4.548 21 H 0.072 0.928 22 C -0.134 4.134 23 N -0.522 5.522 24 Si 0.718 3.282 25 H -0.208 1.208 26 H -0.213 1.213 27 H -0.200 1.200 28 N -0.333 5.333 29 H 0.276 0.724 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.264 0.736 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.098 0.902 44 H 0.089 0.911 45 H 0.092 0.908 46 H 0.043 0.957 47 H 0.024 0.976 48 H 0.101 0.899 49 H 0.037 0.963 50 H 0.039 0.961 51 H 0.094 0.906 52 H 0.036 0.964 53 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.752 -19.897 10.902 23.671 hybrid contribution -0.210 0.657 -0.831 1.080 sum 6.541 -19.241 10.071 22.681 Atomic orbital electron populations 1.21727 0.95902 1.00344 1.01857 1.21512 0.94494 0.89298 1.00687 1.72664 1.20689 1.17319 1.23102 1.19694 0.90396 0.81602 0.88334 1.69279 1.28976 1.34092 1.06908 1.18910 0.83814 0.79141 0.87041 1.44274 1.60443 1.11517 1.17030 1.20674 0.91412 0.96012 0.84784 1.22617 1.01777 0.97621 1.02338 1.22004 1.03357 0.97136 0.98265 1.22541 0.95581 1.02444 1.02915 1.43074 1.53295 1.08834 1.25617 0.72256 1.18868 0.90511 0.88200 0.81778 1.72250 1.30196 0.98680 1.29559 1.22177 1.00542 0.93649 0.88319 1.18150 0.90182 0.89827 0.94607 1.21764 1.00434 0.99562 0.96532 1.21635 0.98847 1.00358 0.96771 1.21095 1.29362 1.08218 0.96156 0.92766 1.24878 0.95523 0.97435 0.95608 1.69837 1.32058 1.27264 1.23082 0.86629 0.78541 0.80074 0.82943 1.20768 1.21327 1.19983 1.43598 1.51702 1.12339 1.25621 0.72362 0.92636 0.93026 0.93396 0.92371 0.92328 0.73582 0.90981 0.90087 0.91016 0.91398 0.90122 0.91292 0.91749 0.90156 0.91082 0.90785 0.95703 0.97578 0.89938 0.96331 0.96106 0.90560 0.96443 0.93163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 10.24 37.16 0.38 -1.55 16 2 C 0.07 1.09 7.05 -4.03 -0.03 1.06 16 3 N -0.60 -11.09 10.66 -62.15 -0.66 -11.75 16 4 C 0.57 10.07 8.45 -322.02 -2.72 7.34 16 5 N -0.64 -9.64 8.71 -14.45 -0.13 -9.77 16 6 C 0.67 8.22 7.86 -320.52 -2.52 5.70 16 7 N -0.69 -5.34 5.17 -49.15 -0.25 -5.59 16 8 C 0.16 0.88 1.06 -131.82 -0.14 0.74 16 9 C -0.18 -1.25 8.24 37.16 0.31 -0.95 16 10 C -0.15 -0.48 8.59 37.16 0.32 -0.16 16 11 C -0.18 -0.99 8.38 37.16 0.31 -0.68 16 12 N -0.66 -8.64 3.80 -13.85 -0.05 -8.69 16 13 H 0.43 4.78 3.46 -40.82 -0.14 4.64 16 14 C 0.57 9.79 8.32 -318.54 -2.65 7.14 16 15 N -0.58 -10.97 9.13 -61.48 -0.56 -11.54 16 16 C 0.08 1.76 5.10 -4.04 -0.02 1.74 16 17 C 0.07 1.80 0.57 -155.66 -0.09 1.71 16 18 C -0.13 -3.12 8.08 37.15 0.30 -2.82 16 19 C -0.12 -2.92 8.09 37.16 0.30 -2.62 16 20 C -0.51 -13.79 8.01 -34.44 -0.28 -14.07 16 21 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 22 C 0.07 1.82 5.15 -17.82 -0.09 1.73 16 23 N -0.88 -24.71 9.35 55.43 0.52 -24.19 16 24 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 28 N -0.68 -12.30 5.39 -14.10 -0.08 -12.38 16 29 H 0.43 8.31 6.36 -40.82 -0.26 8.05 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.87 6.65 -51.93 -0.35 0.52 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.42 2.70 8.58 -40.82 -0.35 2.35 16 36 H 0.07 0.49 8.13 -51.93 -0.42 0.07 16 37 H 0.08 0.42 8.13 -51.93 -0.42 -0.01 16 38 H 0.07 0.68 4.89 -51.93 -0.25 0.43 16 39 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 40 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 41 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.06 0.49 5.28 -51.93 -0.27 0.21 16 43 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 46 H 0.02 0.52 5.54 -51.93 -0.29 0.23 16 47 H 0.01 0.13 7.43 -51.93 -0.39 -0.26 16 48 H 0.08 2.26 6.07 -51.93 -0.32 1.95 16 49 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 50 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.08 2.06 6.07 -51.93 -0.32 1.74 16 52 H 0.02 0.39 7.60 -51.93 -0.39 0.00 16 53 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 404.20 15.07 6.09 6.09 Total: -1.00 -31.29 404.20 -15.54 -46.84 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: -8.78 Total: 10.31 kcal Atomic # 6 Polarization: 10.96 SS G_CDS: -6.62 Total: 4.34 kcal Atomic # 7 Polarization: -82.69 SS G_CDS: -1.21 Total: -83.91 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.29 -15.54 -46.84 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413412229.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.717 kcal (2) G-P(sol) polarization free energy of solvation -31.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -15.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds