Wall clock time and date at job start Sat Apr 11 2020 04:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46506 * 109.46784 * 2 1 4 4 C 1.30981 * 119.99948 * 120.00287 * 3 2 1 5 5 N 1.34563 * 119.90126 * 359.72170 * 4 3 2 6 6 C 1.31509 * 121.25744 * 179.75166 * 5 4 3 7 7 N 1.36672 * 119.52010 * 180.26702 * 6 5 4 8 8 C 1.46500 * 120.00213 * 185.77658 * 7 6 5 9 9 C 1.53005 * 109.46816 * 54.85920 * 8 7 6 10 10 C 1.53002 * 109.47115 * 174.85984 * 8 7 6 11 11 C 1.52995 * 109.47011 * 294.86024 * 8 7 6 12 12 N 1.36957 * 120.96430 * 0.52662 * 6 5 4 13 13 H 0.96994 * 120.14357 * 179.75814 * 12 6 5 14 14 C 1.38091 * 119.70805 * 359.74064 * 12 6 5 15 15 N 1.30238 * 120.59047 * 179.97438 * 14 12 6 16 16 C 1.46496 * 119.99859 * 173.80565 * 15 14 12 17 17 C 1.53007 * 109.46781 * 114.38972 * 16 15 14 18 18 C 1.52995 * 109.47042 * 300.00003 * 17 16 15 19 19 C 1.52998 * 109.47083 * 60.00135 * 17 16 15 20 20 C 1.50701 * 109.46808 * 179.97438 * 17 16 15 21 21 H 1.07995 * 120.00661 * 0.02562 * 20 17 16 22 22 C 1.37884 * 119.99832 * 180.02562 * 20 17 16 23 23 N 1.31510 * 119.99732 * 359.97438 * 22 20 17 24 24 Si 1.86798 * 120.00207 * 180.02562 * 22 20 17 25 25 H 1.48495 * 109.47262 * 89.99302 * 24 22 20 26 26 H 1.48495 * 109.47035 * 209.99758 * 24 22 20 27 27 H 1.48502 * 109.46896 * 329.99730 * 24 22 20 28 28 N 1.38045 * 118.81952 * 359.97438 * 14 12 6 29 29 H 0.96996 * 120.47142 * 179.97438 * 28 14 12 30 30 H 1.08997 * 109.47132 * 59.99758 * 1 2 3 31 31 H 1.08995 * 109.47051 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46845 * 300.00209 * 1 2 3 33 33 H 1.08998 * 109.46783 * 119.99832 * 2 1 3 34 34 H 1.09003 * 109.46634 * 240.00292 * 2 1 3 35 35 H 0.97000 * 120.00097 * 5.77384 * 7 6 5 36 36 H 1.08997 * 109.46934 * 67.84949 * 9 8 7 37 37 H 1.09000 * 109.46672 * 187.84692 * 9 8 7 38 38 H 1.08994 * 109.46880 * 307.84787 * 9 8 7 39 39 H 1.08994 * 109.47152 * 60.00147 * 10 8 7 40 40 H 1.09002 * 109.46483 * 179.97438 * 10 8 7 41 41 H 1.08995 * 109.47027 * 299.99987 * 10 8 7 42 42 H 1.09000 * 109.47234 * 64.59442 * 11 8 7 43 43 H 1.09001 * 109.47190 * 184.59359 * 11 8 7 44 44 H 1.09003 * 109.47416 * 304.59788 * 11 8 7 45 45 H 1.09001 * 109.47569 * 234.38804 * 16 15 14 46 46 H 1.08994 * 109.47650 * 354.39248 * 16 15 14 47 47 H 1.09001 * 109.47608 * 60.00046 * 18 17 16 48 48 H 1.09004 * 109.46861 * 180.02562 * 18 17 16 49 49 H 1.09006 * 109.47035 * 299.99863 * 18 17 16 50 50 H 1.09000 * 109.47385 * 59.99732 * 19 17 16 51 51 H 1.08999 * 109.47064 * 179.97438 * 19 17 16 52 52 H 1.09000 * 109.47294 * 299.99755 * 19 17 16 53 53 H 0.97002 * 119.99909 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.7714 1.8097 0.9823 5 7 3.0907 0.9811 1.9933 6 6 3.8488 1.3817 2.9905 7 7 4.1555 0.5086 3.9962 8 6 4.8917 0.9764 5.1733 9 6 4.1545 2.1629 5.7975 10 6 4.9918 -0.1572 6.1960 11 6 6.2976 1.4120 4.7555 12 7 4.3311 2.6627 3.0385 13 1 4.8864 2.9465 3.7814 14 6 4.0237 3.5481 2.0244 15 7 4.4727 4.7703 2.0530 16 6 4.2537 5.6580 0.9084 17 6 3.3335 6.8078 1.3234 18 6 1.9921 6.2428 1.7945 19 6 3.9836 7.5955 2.4626 20 6 3.1088 7.7213 0.1461 21 1 3.5752 7.5034 -0.8033 22 6 2.3076 8.8354 0.2810 23 7 1.7393 9.1004 1.4369 24 14 2.0285 9.9674 -1.1785 25 1 0.8382 9.5097 -1.9393 26 1 1.8038 11.3530 -0.6943 27 1 3.2216 9.9391 -2.0621 28 7 3.2319 3.1148 0.9799 29 1 3.0009 3.7167 0.2553 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8901 35 1 3.8857 -0.4208 3.9308 36 1 3.2095 1.8219 6.2202 37 1 4.7688 2.5985 6.5856 38 1 3.9601 2.9136 5.0315 39 1 5.5169 -1.0024 5.7513 40 1 5.5399 0.1908 7.0715 41 1 3.9902 -0.4675 6.4935 42 1 6.2287 2.2725 4.0901 43 1 6.8723 1.6829 5.6413 44 1 6.7935 0.5911 4.2376 45 1 5.2094 6.0606 0.5727 46 1 3.7906 5.0969 0.0967 47 1 2.1549 5.5822 2.6462 48 1 1.3364 7.0619 2.0898 49 1 1.5290 5.6816 0.9828 50 1 4.9393 7.9980 2.1270 51 1 3.3282 8.4148 2.7580 52 1 4.1465 6.9350 3.3143 53 1 1.1753 9.8840 1.5317 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413412229.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:52:52 Heat of formation + Delta-G solvation = 91.970037 kcal Electronic energy + Delta-G solvation = -30917.778860 eV Core-core repulsion = 27053.846275 eV Total energy + Delta-G solvation = -3863.932585 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.233 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.50885 -39.86214 -38.51574 -37.14418 -36.09599 -34.54600 -33.98429 -32.55377 -31.69787 -30.42576 -28.48814 -28.35089 -27.60587 -27.37987 -26.87735 -24.69819 -23.84960 -22.12964 -21.44040 -20.40497 -20.34957 -19.68405 -18.26933 -18.01286 -17.51110 -17.02704 -16.64108 -16.58637 -15.99921 -15.86839 -15.46977 -15.28752 -15.00914 -14.65380 -14.55636 -14.19183 -14.13594 -13.73777 -13.26218 -13.15995 -13.13270 -13.06595 -12.98809 -12.89771 -12.78509 -12.70486 -12.55858 -12.52352 -12.26819 -12.15879 -12.14434 -12.10115 -11.92612 -11.53791 -11.40530 -11.33408 -10.85436 -10.42186 -10.29372 -10.25876 -10.10039 -9.23335 -8.85639 -7.98615 -6.16478 0.40868 1.03363 1.13764 1.42403 1.44423 1.53007 1.79863 1.98554 2.45976 2.68977 3.23555 3.52631 3.74312 3.81232 3.82998 3.94889 4.04311 4.35545 4.38715 4.49736 4.54431 4.61715 4.64612 4.67760 4.73361 4.76192 4.78300 4.83430 4.90063 4.94561 4.96336 5.01966 5.11548 5.14268 5.15678 5.24620 5.27572 5.31218 5.36613 5.38210 5.40964 5.48027 5.52742 5.65306 5.70156 5.79652 6.11483 6.12922 6.28516 6.29947 6.46086 6.88285 6.99607 7.15084 7.44533 7.51456 8.99531 Molecular weight = 336.23amu Principal moments of inertia in cm(-1) A = 0.011172 B = 0.003493 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.664500 B = 8014.387730 C = 9844.896183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.071 3.929 3 N -0.640 5.640 4 C 0.561 3.439 5 N -0.654 5.654 6 C 0.675 3.325 7 N -0.668 5.668 8 C 0.155 3.845 9 C -0.186 4.186 10 C -0.145 4.145 11 C -0.175 4.175 12 N -0.647 5.647 13 H 0.439 0.561 14 C 0.584 3.416 15 N -0.594 5.594 16 C 0.094 3.906 17 C 0.066 3.934 18 C -0.105 4.105 19 C -0.104 4.104 20 C -0.528 4.528 21 H 0.050 0.950 22 C 0.023 3.977 23 N -0.904 5.904 24 Si 0.947 3.053 25 H -0.281 1.281 26 H -0.284 1.284 27 H -0.270 1.270 28 N -0.690 5.690 29 H 0.423 0.577 30 H 0.045 0.955 31 H 0.080 0.920 32 H 0.032 0.968 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.434 0.566 36 H 0.071 0.929 37 H 0.100 0.900 38 H 0.042 0.958 39 H 0.078 0.922 40 H 0.097 0.903 41 H 0.071 0.929 42 H 0.043 0.957 43 H 0.102 0.898 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.023 0.977 47 H 0.012 0.988 48 H 0.055 0.945 49 H 0.009 0.991 50 H 0.018 0.982 51 H 0.050 0.950 52 H 0.028 0.972 53 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.123 -22.297 12.642 26.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.060 4.060 3 N -0.375 5.375 4 C 0.192 3.808 5 N -0.406 5.406 6 C 0.312 3.688 7 N -0.308 5.308 8 C 0.071 3.929 9 C -0.244 4.244 10 C -0.202 4.202 11 C -0.234 4.234 12 N -0.297 5.297 13 H 0.291 0.709 14 C 0.218 3.782 15 N -0.328 5.328 16 C -0.035 4.035 17 C 0.065 3.935 18 C -0.162 4.162 19 C -0.162 4.162 20 C -0.566 4.566 21 H 0.068 0.932 22 C -0.176 4.176 23 N -0.543 5.543 24 Si 0.774 3.226 25 H -0.208 1.208 26 H -0.210 1.210 27 H -0.195 1.195 28 N -0.338 5.338 29 H 0.265 0.735 30 H 0.065 0.935 31 H 0.099 0.901 32 H 0.052 0.948 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.276 0.724 36 H 0.090 0.910 37 H 0.119 0.881 38 H 0.061 0.939 39 H 0.097 0.903 40 H 0.115 0.885 41 H 0.090 0.910 42 H 0.061 0.939 43 H 0.121 0.879 44 H 0.094 0.906 45 H 0.088 0.912 46 H 0.041 0.959 47 H 0.031 0.969 48 H 0.074 0.926 49 H 0.028 0.972 50 H 0.037 0.963 51 H 0.069 0.931 52 H 0.047 0.953 53 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.766 -21.985 12.366 26.393 hybrid contribution -0.484 1.155 -1.139 1.693 sum 7.282 -20.830 11.227 24.758 Atomic orbital electron populations 1.21677 0.94891 1.01863 1.00628 1.21596 0.95284 0.88066 1.01034 1.72595 1.21636 1.19069 1.24183 1.19854 0.90411 0.81440 0.89128 1.69284 1.30621 1.33333 1.07347 1.19141 0.83102 0.79178 0.87346 1.44544 1.58899 1.11263 1.16078 1.20938 0.90924 0.96824 0.84257 1.22637 1.02470 0.97247 1.02048 1.22007 1.04064 0.96282 0.97844 1.22555 0.95659 1.01649 1.03527 1.43085 1.53137 1.08657 1.24847 0.70946 1.19105 0.88946 0.88197 0.81991 1.72230 1.32321 0.99451 1.28748 1.21814 0.99407 0.93165 0.89162 1.18164 0.90641 0.90782 0.93910 1.21517 1.00131 0.98330 0.96261 1.21447 0.97968 0.99590 0.97164 1.21411 1.29460 1.08955 0.96816 0.93163 1.25548 0.95446 0.98763 0.97821 1.69968 1.32326 1.27527 1.24451 0.85731 0.78350 0.78354 0.80212 1.20760 1.20971 1.19456 1.43736 1.51799 1.12696 1.25557 0.73455 0.93537 0.90106 0.94834 0.92072 0.91768 0.72410 0.90959 0.88092 0.93898 0.90326 0.88477 0.90971 0.93875 0.87945 0.90639 0.91228 0.95876 0.96941 0.92590 0.97182 0.96292 0.93089 0.95345 0.93280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.56 10.24 71.98 0.74 -2.82 16 2 C 0.07 2.13 7.05 86.38 0.61 2.74 16 3 N -0.64 -23.70 10.66 -350.54 -3.74 -27.43 16 4 C 0.56 19.92 8.45 261.21 2.21 22.12 16 5 N -0.65 -19.12 8.71 -199.63 -1.74 -20.86 16 6 C 0.68 15.58 7.86 260.69 2.05 17.63 16 7 N -0.67 -8.73 5.17 -309.42 -1.60 -10.33 16 8 C 0.16 1.29 1.06 3.60 0.00 1.29 16 9 C -0.19 -2.08 8.24 71.98 0.59 -1.49 16 10 C -0.14 -0.37 8.59 71.98 0.62 0.25 16 11 C -0.18 -1.47 8.38 71.98 0.60 -0.87 16 12 N -0.65 -16.41 3.80 -197.74 -0.75 -17.17 16 13 H 0.44 9.30 3.46 -92.71 -0.32 8.98 16 14 C 0.58 19.94 8.32 260.00 2.16 22.10 16 15 N -0.59 -22.71 9.13 -348.41 -3.18 -25.89 16 16 C 0.09 4.11 5.10 86.38 0.44 4.55 16 17 C 0.07 3.30 0.57 -52.93 -0.03 3.27 16 18 C -0.10 -5.33 8.08 71.98 0.58 -4.74 16 19 C -0.10 -5.19 8.09 71.98 0.58 -4.60 16 20 C -0.53 -29.00 8.01 25.60 0.21 -28.80 16 21 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 22 C 0.02 1.29 5.15 84.66 0.44 1.73 16 23 N -0.90 -51.41 9.35 21.45 0.20 -51.21 16 24 Si 0.95 44.18 29.54 68.60 2.03 46.21 16 25 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 26 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 27 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 28 N -0.69 -25.22 5.39 -198.53 -1.07 -26.29 16 29 H 0.42 16.78 6.36 -92.71 -0.59 16.19 16 30 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.06 1.77 6.65 -2.39 -0.02 1.76 16 34 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.43 4.30 8.58 -92.71 -0.80 3.51 16 36 H 0.07 0.82 8.13 -2.39 -0.02 0.80 16 37 H 0.10 0.74 8.13 -2.39 -0.02 0.72 16 38 H 0.04 0.75 4.89 -2.39 -0.01 0.74 16 39 H 0.08 0.09 8.14 -2.39 -0.02 0.07 16 40 H 0.10 0.02 8.14 -2.39 -0.02 0.00 16 41 H 0.07 0.19 8.14 -2.39 -0.02 0.17 16 42 H 0.04 0.57 5.28 -2.39 -0.01 0.56 16 43 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 44 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 46 H 0.02 1.00 5.54 -2.39 -0.01 0.98 16 47 H 0.01 0.57 7.43 -2.39 -0.02 0.55 16 48 H 0.06 3.14 6.07 -2.39 -0.01 3.13 16 49 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 50 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 51 H 0.05 2.79 6.07 -2.39 -0.01 2.78 16 52 H 0.03 1.30 7.60 -2.39 -0.02 1.28 16 53 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 Total: -1.00 -68.73 404.20 1.18 -67.55 By element: Atomic # 1 Polarization: 33.83 SS G_CDS: -0.77 Total: 33.07 kcal Atomic # 6 Polarization: 20.56 SS G_CDS: 11.80 Total: 32.36 kcal Atomic # 7 Polarization: -167.31 SS G_CDS: -11.88 Total: -179.19 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -68.73 1.18 -67.55 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413412229.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.525 kcal (2) G-P(sol) polarization free energy of solvation -68.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds