Wall clock time and date at job start Sat Apr 11 2020 04:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.48647 * 111.00137 * 2 1 4 4 C 1.55223 * 103.39690 * 200.98395 * 3 2 1 5 5 C 1.53360 * 102.59368 * 36.35143 * 4 3 2 6 6 C 1.53350 * 111.47828 * 100.99298 * 5 4 3 7 7 C 1.54289 * 104.70446 * 140.82841 * 6 5 4 8 8 N 1.47593 * 107.05402 * 2.06797 * 7 6 5 9 9 C 1.34782 * 126.94034 * 154.92654 * 8 7 6 10 10 O 1.21580 * 119.99901 * 180.02562 * 9 8 7 11 11 N 1.34779 * 119.99777 * 0.02562 * 9 8 7 12 12 C 1.46503 * 119.99805 * 180.02562 * 11 9 8 13 13 C 1.53036 * 109.45838 * 275.07101 * 12 11 9 14 14 C 1.53198 * 109.31196 * 178.61643 * 13 12 11 15 15 N 1.46919 * 108.77622 * 54.63288 * 14 13 12 16 16 C 1.36935 * 120.63146 * 126.41432 * 15 14 13 17 17 H 1.07997 * 120.00260 * 207.66544 * 16 15 14 18 18 C 1.38812 * 119.99746 * 27.66356 * 16 15 14 19 19 N 1.31615 * 120.00388 * 17.36921 * 18 16 15 20 20 Si 1.86806 * 119.99731 * 197.36659 * 18 16 15 21 21 H 1.48499 * 109.47120 * 90.00241 * 20 18 16 22 22 H 1.48501 * 109.46781 * 210.00109 * 20 18 16 23 23 H 1.48499 * 109.47500 * 330.00150 * 20 18 16 24 24 C 1.46931 * 118.73820 * 306.39494 * 15 14 13 25 25 C 1.53032 * 109.45732 * 155.00385 * 12 11 9 26 26 C 1.48351 * 106.12279 * 334.91848 * 8 7 6 27 27 C 1.48251 * 111.00036 * 242.53753 * 2 1 3 28 28 H 1.08997 * 109.47497 * 177.45561 * 1 2 3 29 29 H 1.09005 * 109.47163 * 297.46057 * 1 2 3 30 30 H 1.09001 * 109.46998 * 57.45479 * 1 2 3 31 31 H 1.09002 * 110.63221 * 319.45531 * 3 2 1 32 32 H 1.08993 * 110.64041 * 82.50265 * 3 2 1 33 33 H 1.09007 * 110.77939 * 278.07437 * 4 3 2 34 34 H 1.08996 * 110.78687 * 154.62991 * 4 3 2 35 35 H 1.08997 * 110.39058 * 22.02576 * 6 5 4 36 36 H 1.09004 * 110.38759 * 259.63689 * 6 5 4 37 37 H 1.09004 * 109.91603 * 121.41704 * 7 6 5 38 38 H 1.08994 * 109.91952 * 242.71070 * 7 6 5 39 39 H 0.96996 * 120.00091 * 0.02562 * 11 9 8 40 40 H 1.08992 * 109.45739 * 35.02751 * 12 11 9 41 41 H 1.09004 * 109.50275 * 298.56619 * 13 12 11 42 42 H 1.09004 * 109.50135 * 58.66174 * 13 12 11 43 43 H 1.08999 * 109.57887 * 294.84534 * 14 13 12 44 44 H 1.09002 * 109.58288 * 174.42347 * 14 13 12 45 45 H 0.96996 * 120.00815 * 180.02562 * 19 18 16 46 46 H 1.08994 * 109.58267 * 293.81802 * 24 15 14 47 47 H 1.09000 * 109.58443 * 173.39668 * 24 15 14 48 48 H 1.09002 * 109.49866 * 301.33320 * 25 12 11 49 49 H 1.09002 * 109.50377 * 61.43332 * 25 12 11 50 50 H 1.09003 * 110.68306 * 279.46580 * 26 8 7 51 51 H 1.09001 * 110.82544 * 156.36890 * 26 8 7 52 52 H 1.09000 * 110.04025 * 26.36407 * 27 2 1 53 53 H 1.08993 * 110.08471 * 264.93641 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0018 1.3877 0.0000 4 6 3.4469 1.2182 -0.5407 5 6 3.2848 0.1073 -1.5856 6 6 3.2360 0.6775 -3.0083 7 6 4.0439 -0.3242 -3.8595 8 7 4.4682 -1.4139 -2.9590 9 6 4.7658 -2.6818 -3.3060 10 8 5.1035 -3.4817 -2.4548 11 7 4.6891 -3.0630 -4.5965 12 6 5.0121 -4.4413 -4.9736 13 6 6.5233 -4.5740 -5.1750 14 6 6.8611 -6.0242 -5.5354 15 7 6.0597 -6.4207 -6.7012 16 6 6.6605 -6.9404 -7.8166 17 1 6.1982 -6.8191 -8.7851 18 6 7.8637 -7.6232 -7.7024 19 7 8.2577 -8.0706 -6.5291 20 14 8.9235 -7.9071 -9.2143 21 1 9.8682 -6.7728 -9.3767 22 1 9.6888 -9.1693 -9.0523 23 1 8.0562 -8.0048 -10.4157 24 6 4.6015 -6.2493 -6.6475 25 6 4.2891 -4.7966 -6.2747 26 6 4.5012 -0.8318 -1.5948 27 6 2.0003 -0.6383 -1.2281 28 1 -0.3634 -1.0266 -0.0456 29 1 -0.3634 0.4739 0.9119 30 1 -0.3633 0.5529 -0.8663 31 1 1.4157 2.0241 -0.6631 32 1 2.0152 1.7941 1.0112 33 1 4.1232 0.9054 0.2548 34 1 3.7961 2.1396 -1.0067 35 1 3.7007 1.6630 -3.0386 36 1 2.2059 0.7312 -3.3608 37 1 3.4174 -0.7240 -4.6568 38 1 4.9186 0.1693 -4.2831 39 1 4.4201 -2.4248 -5.2755 40 1 4.6906 -5.1189 -4.1827 41 1 6.8420 -3.9148 -5.9826 42 1 7.0387 -4.2982 -4.2550 43 1 6.6263 -6.6741 -4.6925 44 1 7.9211 -6.1033 -5.7765 45 1 9.0987 -8.5474 -6.4492 46 1 4.1826 -6.9177 -5.8953 47 1 4.1706 -6.4771 -7.6224 48 1 3.2142 -4.6794 -6.1373 49 1 4.6287 -4.1354 -7.0719 50 1 5.4221 -0.2702 -1.4380 51 1 4.3927 -1.6096 -0.8389 52 1 1.2776 -0.5472 -2.0390 53 1 2.2188 -1.6892 -1.0392 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589878014.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:54:32 Heat of formation + Delta-G solvation = -15.109808 kcal Electronic energy + Delta-G solvation = -30257.996795 eV Core-core repulsion = 26357.128128 eV Total energy + Delta-G solvation = -3900.868666 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.227 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.75658 -40.52220 -39.03610 -37.48627 -36.00297 -34.12878 -33.32456 -31.75825 -31.28602 -30.79069 -29.94348 -27.80166 -26.84175 -25.38670 -23.94632 -23.80373 -23.44599 -22.23849 -21.22461 -20.77348 -20.32186 -19.13047 -18.55282 -17.32992 -17.18262 -16.79589 -16.37254 -16.28625 -15.89932 -15.63757 -15.36871 -15.33392 -15.03219 -14.79548 -14.75334 -14.52666 -14.21857 -14.09142 -13.96559 -13.49626 -13.20477 -13.07981 -13.01969 -12.93624 -12.69560 -12.62475 -12.60806 -12.37355 -12.27306 -12.12906 -12.03256 -11.87278 -11.78471 -11.63625 -11.55147 -11.43449 -11.40282 -11.19303 -10.58842 -10.15732 -9.52260 -9.38234 -8.73059 -7.87186 -5.33645 1.47526 1.49036 1.55319 1.58367 2.13693 2.51680 2.97052 3.07356 3.28501 3.39888 3.49727 3.60689 3.66048 3.86532 4.01704 4.08146 4.20199 4.23741 4.32810 4.35750 4.44065 4.44836 4.46432 4.54967 4.63710 4.65633 4.66096 4.77324 4.78572 4.82156 4.85121 4.88488 4.96658 4.99945 5.02589 5.04304 5.06681 5.10507 5.13155 5.16370 5.26413 5.30482 5.36910 5.44868 5.58946 5.63792 5.68784 5.89855 6.07041 6.07858 6.38120 7.00921 7.12695 7.57705 7.83668 8.36865 9.19989 Molecular weight = 336.23amu Principal moments of inertia in cm(-1) A = 0.029751 B = 0.002138 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.903980 B =13094.116010 C =13228.537354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.545 5.545 3 C 0.035 3.965 4 C -0.104 4.104 5 C -0.077 4.077 6 C -0.108 4.108 7 C 0.094 3.906 8 N -0.641 5.641 9 C 0.717 3.283 10 O -0.640 6.640 11 N -0.723 5.723 12 C 0.181 3.819 13 C -0.129 4.129 14 C 0.183 3.817 15 N -0.609 5.609 16 C -0.260 4.260 17 H 0.076 0.924 18 C -0.057 4.057 19 N -0.939 5.939 20 Si 0.971 3.029 21 H -0.286 1.286 22 H -0.298 1.298 23 H -0.263 1.263 24 C 0.142 3.858 25 C -0.119 4.119 26 C 0.136 3.864 27 C 0.057 3.943 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.036 0.964 31 H 0.058 0.942 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.408 0.592 40 H 0.052 0.948 41 H 0.061 0.939 42 H 0.040 0.960 43 H -0.013 1.013 44 H 0.056 0.944 45 H 0.249 0.751 46 H 0.011 0.989 47 H 0.070 0.930 48 H 0.090 0.910 49 H 0.076 0.924 50 H 0.081 0.919 51 H 0.056 0.944 52 H 0.053 0.947 53 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.812 27.020 8.052 32.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.270 5.270 3 C -0.092 4.092 4 C -0.142 4.142 5 C -0.078 4.078 6 C -0.146 4.146 7 C -0.028 4.028 8 N -0.379 5.379 9 C 0.419 3.581 10 O -0.522 6.522 11 N -0.378 5.378 12 C 0.076 3.924 13 C -0.169 4.169 14 C 0.057 3.943 15 N -0.333 5.333 16 C -0.390 4.390 17 H 0.093 0.907 18 C -0.252 4.252 19 N -0.586 5.586 20 Si 0.799 3.201 21 H -0.213 1.213 22 H -0.225 1.225 23 H -0.188 1.188 24 C 0.016 3.984 25 C -0.159 4.159 26 C 0.013 3.987 27 C -0.071 4.071 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.122 0.878 35 H 0.126 0.874 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.244 0.756 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.059 0.941 43 H 0.006 0.994 44 H 0.074 0.926 45 H 0.058 0.942 46 H 0.029 0.971 47 H 0.089 0.911 48 H 0.108 0.892 49 H 0.095 0.905 50 H 0.099 0.901 51 H 0.075 0.925 52 H 0.071 0.929 53 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -15.298 25.950 9.102 31.469 hybrid contribution 0.564 -0.463 -1.214 1.417 sum -14.734 25.487 7.888 30.478 Atomic orbital electron populations 1.22520 0.87084 1.01943 1.01650 1.64819 1.09069 1.16317 1.36767 1.23368 0.95039 0.88910 1.01873 1.22452 0.96798 0.97655 0.97312 1.21581 0.93617 0.95564 0.97079 1.22567 1.01508 0.98947 0.91606 1.22399 0.99506 0.87500 0.93380 1.47981 1.71389 1.07796 1.10751 1.15649 0.78081 0.81289 0.83102 1.90905 1.57113 1.53038 1.51106 1.45102 1.73110 1.13170 1.06401 1.20512 0.94013 0.81213 0.96697 1.22308 0.96479 0.98645 0.99467 1.20461 0.96358 0.90046 0.87475 1.44367 1.01530 1.72515 1.14879 1.19587 1.04676 1.27489 0.87237 0.90666 1.25902 1.01999 0.97931 0.99354 1.70217 1.22742 1.40546 1.25053 0.85210 0.78791 0.76488 0.79624 1.21256 1.22526 1.18770 1.21048 0.84176 0.93838 0.99374 1.22126 1.00209 0.98167 0.95353 1.22297 0.98267 0.95194 0.82932 1.22691 0.95172 0.98025 0.91223 0.92136 0.90340 0.94512 0.92359 0.89399 0.90789 0.87826 0.87441 0.89493 0.90051 0.90134 0.75556 0.92968 0.92038 0.94104 0.99446 0.92591 0.94197 0.97118 0.91117 0.89171 0.90499 0.90061 0.92520 0.92896 0.93307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.40 127.69 1.20 1.41 16 2 N -0.55 -8.61 5.57 -909.80 -5.07 -13.68 16 3 C 0.04 0.36 6.59 86.73 0.57 0.94 16 4 C -0.10 -0.99 6.19 31.48 0.19 -0.79 16 5 C -0.08 -1.02 0.79 -51.80 -0.04 -1.06 16 6 C -0.11 -0.91 6.14 31.15 0.19 -0.72 16 7 C 0.09 1.21 6.67 86.61 0.58 1.79 16 8 N -0.64 -14.73 3.30 -828.38 -2.74 -17.46 16 9 C 0.72 23.39 8.50 179.05 1.52 24.91 16 10 O -0.64 -27.94 16.23 -3.97 -0.06 -28.01 16 11 N -0.72 -20.85 5.05 -457.71 -2.31 -23.16 16 12 C 0.18 6.52 2.41 45.01 0.11 6.63 16 13 C -0.13 -5.44 5.65 30.67 0.17 -5.27 16 14 C 0.18 9.58 5.31 86.37 0.46 10.03 16 15 N -0.61 -31.28 2.99 -699.10 -2.09 -33.38 16 16 C -0.26 -14.34 9.59 84.03 0.81 -13.54 16 17 H 0.08 3.94 7.89 -2.91 -0.02 3.92 16 18 C -0.06 -3.24 4.91 84.86 0.42 -2.83 16 19 N -0.94 -57.75 11.19 21.65 0.24 -57.51 16 20 Si 0.97 45.39 29.59 68.60 2.03 47.42 16 21 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 22 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 23 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 24 C 0.14 5.80 6.52 86.36 0.56 6.36 16 25 C -0.12 -3.77 5.55 30.67 0.17 -3.60 16 26 C 0.14 2.78 5.78 86.25 0.50 3.27 16 27 C 0.06 0.97 6.07 85.96 0.52 1.49 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.04 0.39 8.01 -2.39 -0.02 0.37 16 31 H 0.06 0.46 7.95 -2.39 -0.02 0.44 16 32 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.07 0.84 7.91 -2.38 -0.02 0.82 16 34 H 0.10 0.49 7.41 -2.39 -0.02 0.47 16 35 H 0.11 0.43 7.42 -2.39 -0.02 0.41 16 36 H 0.09 0.60 7.37 -2.38 -0.02 0.58 16 37 H 0.08 0.88 7.32 -2.38 -0.02 0.86 16 38 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.41 8.69 7.18 -92.71 -0.67 8.02 16 40 H 0.05 2.22 7.58 -2.39 -0.02 2.20 16 41 H 0.06 2.49 8.14 -2.38 -0.02 2.47 16 42 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 43 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 44 H 0.06 3.28 6.04 -2.39 -0.01 3.26 16 45 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 46 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 47 H 0.07 2.71 7.93 -2.39 -0.02 2.69 16 48 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 49 H 0.08 2.27 8.14 -2.39 -0.02 2.26 16 50 H 0.08 1.46 8.06 -2.39 -0.02 1.44 16 51 H 0.06 1.52 7.50 -2.39 -0.02 1.51 16 52 H 0.05 0.82 6.90 -2.39 -0.02 0.81 16 53 H 0.05 1.17 7.51 -2.39 -0.02 1.15 16 Total: -1.00 -76.79 400.99 -1.85 -78.64 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: 0.22 Total: 18.08 kcal Atomic # 6 Polarization: 21.11 SS G_CDS: 7.93 Total: 29.04 kcal Atomic # 7 Polarization: -133.22 SS G_CDS: -11.96 Total: -145.18 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -0.06 Total: -28.01 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -76.79 -1.85 -78.64 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589878014.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.532 kcal (2) G-P(sol) polarization free energy of solvation -76.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds