Wall clock time and date at job start Sat Apr 11 2020 04:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00468 * 2 1 4 4 H 1.48498 * 109.47524 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46970 * 299.99957 * 3 2 1 6 6 H 1.48502 * 109.47162 * 59.99546 * 3 2 1 7 7 C 1.37883 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00198 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99623 * 0.02562 * 7 2 1 10 10 O 1.42907 * 110.77627 * 298.21211 * 9 7 2 11 11 C 1.55156 * 110.72094 * 61.44880 * 9 7 2 12 12 C 1.54906 * 101.61451 * 153.84557 * 11 9 7 13 13 N 1.47471 * 104.81210 * 323.04512 * 12 11 9 14 14 S 1.65603 * 125.62776 * 204.14209 * 13 12 11 15 15 O 1.42098 * 106.40266 * 23.45473 * 14 13 12 16 16 O 1.42091 * 106.40130 * 156.37722 * 14 13 12 17 17 C 1.76202 * 107.21592 * 269.91492 * 14 13 12 18 18 C 1.33354 * 125.19001 * 89.72661 * 17 14 13 19 19 C 1.38466 * 114.92694 * 179.79379 * 18 17 14 20 20 C 1.33503 * 114.88873 * 0.49265 * 19 18 17 21 21 Cl 1.73594 * 125.21104 * 179.75992 * 20 19 18 22 22 S 1.75880 * 125.18844 * 270.02261 * 17 14 13 23 23 C 1.47017 * 108.71970 * 24.07007 * 13 12 11 24 24 H 0.97005 * 119.99288 * 0.02562 * 1 2 3 25 25 H 0.96700 * 113.99657 * 61.78848 * 10 9 7 26 26 H 1.09002 * 111.00677 * 271.94141 * 11 9 7 27 27 H 1.09002 * 111.00564 * 35.75399 * 11 9 7 28 28 H 1.09008 * 110.36753 * 81.85112 * 12 11 9 29 29 H 1.09001 * 110.37094 * 204.16995 * 12 11 9 30 30 H 1.07996 * 122.53240 * 359.97165 * 18 17 14 31 31 H 1.08001 * 122.55981 * 180.23206 * 19 18 17 32 32 H 1.08998 * 109.88206 * 239.55467 * 23 13 12 33 33 H 1.09007 * 109.88177 * 118.39340 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 0.4500 -2.6221 1.1777 11 6 0.3763 -2.6281 -1.2745 12 6 0.2717 -4.1661 -1.4268 13 7 1.5929 -4.6763 -1.0159 14 16 2.2572 -6.1198 -1.4824 15 8 1.6265 -6.4753 -2.7051 16 8 3.6643 -5.9763 -1.3467 17 6 1.7638 -7.3278 -0.2984 18 6 0.6574 -8.0686 -0.3717 19 6 0.4798 -8.9575 0.6750 20 6 1.4384 -8.9304 1.6039 21 17 1.4811 -9.9230 3.0274 22 16 2.6517 -7.7354 1.1641 23 6 2.2232 -3.6910 -0.1253 24 1 -0.4849 0.8401 -0.0004 25 1 -0.2297 -1.9398 1.2638 26 1 -0.6067 -2.1829 -1.1207 27 1 0.8738 -2.1831 -2.1362 28 1 -0.5068 -4.5599 -0.7732 29 1 0.0675 -4.4316 -2.4640 30 1 -0.0454 -7.9838 -1.1873 31 1 -0.3714 -9.6193 0.7376 32 1 3.1677 -3.3553 -0.5532 33 1 2.3950 -4.1344 0.8556 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592073129.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:54:49 Heat of formation + Delta-G solvation = -107.559823 kcal Electronic energy + Delta-G solvation = -22760.446294 eV Core-core repulsion = 19065.297795 eV Total energy + Delta-G solvation = -3695.148499 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 337.004 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.78111 -39.23846 -38.42533 -37.79933 -37.12063 -36.07203 -34.14552 -30.94573 -30.76424 -30.01155 -26.70469 -25.60467 -23.23443 -21.66777 -21.56474 -20.33679 -19.65389 -19.01609 -18.52603 -17.54641 -16.86372 -16.84392 -16.55462 -16.05550 -15.83592 -15.16905 -14.90287 -14.76600 -14.52264 -14.03876 -13.92593 -13.72991 -13.45560 -13.38045 -13.31144 -13.12932 -13.06768 -12.96210 -12.81015 -12.62123 -12.27858 -12.22322 -12.15704 -11.92673 -11.91223 -11.16255 -10.59209 -10.30258 -10.07199 -9.98230 -9.82134 -8.19979 -6.33375 -1.00700 -0.71507 -0.21549 0.41319 0.90428 1.19396 1.42861 1.47877 1.57205 1.88026 2.42476 2.55861 3.04548 3.18360 3.75899 3.94892 4.06432 4.15137 4.31202 4.47694 4.52041 4.59653 4.62462 4.71085 4.95920 5.01846 5.18143 5.24429 5.34112 5.57089 5.60731 5.82909 6.14549 6.70816 7.36931 7.46211 8.85875 Molecular weight = 337.00amu Principal moments of inertia in cm(-1) A = 0.018332 B = 0.003599 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.037994 B = 7777.682460 C = 8347.601635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.037 3.963 3 Si 0.955 3.045 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.562 4.562 8 H 0.056 0.944 9 C 0.237 3.763 10 O -0.589 6.589 11 C -0.124 4.124 12 C 0.117 3.883 13 N -1.004 6.004 14 S 2.744 3.256 15 O -0.961 6.961 16 O -0.976 6.976 17 C -0.805 4.805 18 C 0.022 3.978 19 C -0.142 4.142 20 C -0.116 4.116 21 Cl 0.012 6.988 22 S 0.244 5.756 23 C 0.138 3.862 24 H 0.270 0.730 25 H 0.378 0.622 26 H 0.077 0.923 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.185 0.815 31 H 0.192 0.808 32 H 0.071 0.929 33 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.807 -17.123 1.881 17.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.164 4.164 3 Si 0.781 3.219 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.600 4.600 8 H 0.074 0.926 9 C 0.196 3.804 10 O -0.398 6.398 11 C -0.164 4.164 12 C -0.007 4.007 13 N -0.844 5.844 14 S 2.834 3.166 15 O -0.952 6.952 16 O -0.967 6.967 17 C -1.008 5.008 18 C -0.013 4.013 19 C -0.174 4.174 20 C -0.263 4.263 21 Cl 0.041 6.959 22 S 0.509 5.491 23 C 0.013 3.987 24 H 0.079 0.921 25 H 0.228 0.772 26 H 0.096 0.904 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.203 0.797 31 H 0.209 0.791 32 H 0.089 0.911 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.383 -17.357 2.050 17.482 hybrid contribution -1.467 0.775 0.152 1.666 sum -1.084 -16.582 2.202 16.763 Atomic orbital electron populations 1.69768 1.06511 1.28129 1.50079 1.25557 0.95811 1.01807 0.93222 0.85557 0.78962 0.79716 0.77645 1.19869 1.20487 1.20555 1.21847 0.93667 0.91846 1.52634 0.92596 1.19600 0.87460 0.90595 0.82746 1.86103 1.51630 1.56316 1.45701 1.23093 1.01475 0.92553 0.99301 1.22258 0.82736 0.95427 1.00269 1.58418 1.30280 1.32586 1.63080 1.00198 0.72408 0.71039 0.72914 1.93541 1.77690 1.83411 1.40549 1.93545 1.29902 1.86139 1.87133 1.35942 1.13945 1.28221 1.22682 1.20252 0.93367 0.89574 0.98120 1.20733 1.01314 1.02481 0.92885 1.26103 1.02055 1.01798 0.96342 1.98402 1.97816 1.65832 1.33890 1.84542 1.20867 1.31260 1.12480 1.21710 0.96042 0.88714 0.92215 0.92083 0.77223 0.90397 0.92664 0.90578 0.89230 0.79746 0.79089 0.91069 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.32 10.69 21.45 0.23 -45.09 16 2 C 0.04 1.88 5.28 84.66 0.45 2.32 16 3 Si 0.95 40.74 29.54 68.60 2.03 42.77 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 5 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 6 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.56 -28.81 8.22 25.60 0.21 -28.60 16 8 H 0.06 2.90 7.57 -2.91 -0.02 2.87 16 9 C 0.24 11.00 0.84 -10.35 -0.01 10.99 16 10 O -0.59 -28.08 13.08 -148.98 -1.95 -30.03 16 11 C -0.12 -5.24 5.46 31.98 0.17 -5.06 16 12 C 0.12 4.03 7.10 86.85 0.62 4.65 16 13 N -1.00 -35.97 3.70 -506.33 -1.87 -37.84 16 14 S 2.74 90.01 6.08 -56.49 -0.34 89.67 16 15 O -0.96 -32.79 17.12 -128.00 -2.19 -34.99 16 16 O -0.98 -36.87 17.49 -128.00 -2.24 -39.11 16 17 C -0.80 -21.71 6.57 66.71 0.44 -21.27 16 18 C 0.02 0.47 9.84 21.22 0.21 0.68 16 19 C -0.14 -2.53 10.13 21.25 0.22 -2.32 16 20 C -0.12 -2.39 7.10 66.75 0.47 -1.92 16 21 Cl 0.01 0.21 29.29 -2.72 -0.08 0.13 16 22 S 0.24 6.19 23.22 -56.49 -1.31 4.88 16 23 C 0.14 5.73 6.34 86.73 0.55 6.28 16 24 H 0.27 12.88 8.31 -92.70 -0.77 12.11 16 25 H 0.38 18.29 7.49 -74.06 -0.55 17.74 16 26 H 0.08 3.40 7.54 -2.39 -0.02 3.38 16 27 H 0.05 2.43 8.04 -2.39 -0.02 2.41 16 28 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 29 H 0.09 2.72 7.78 -2.39 -0.02 2.70 16 30 H 0.19 3.00 8.06 -2.91 -0.02 2.98 16 31 H 0.19 2.09 8.06 -2.91 -0.02 2.07 16 32 H 0.07 3.01 7.66 -2.39 -0.02 2.99 16 33 H 0.06 2.48 8.07 -2.38 -0.02 2.46 16 Total: -1.00 -59.05 325.11 -3.79 -62.84 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: 0.61 Total: 21.01 kcal Atomic # 6 Polarization: -37.57 SS G_CDS: 3.33 Total: -34.25 kcal Atomic # 7 Polarization: -81.29 SS G_CDS: -1.64 Total: -82.93 kcal Atomic # 8 Polarization: -97.74 SS G_CDS: -6.38 Total: -104.12 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 2.03 Total: 42.77 kcal Atomic # 16 Polarization: 96.21 SS G_CDS: -1.65 Total: 94.55 kcal Atomic # 17 Polarization: 0.21 SS G_CDS: -0.08 Total: 0.13 kcal Total: -59.05 -3.79 -62.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592073129.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.722 kcal (2) G-P(sol) polarization free energy of solvation -59.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds