Wall clock time and date at job start Sat Apr 11 2020 04:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99767 * 2 1 4 4 H 1.48498 * 109.47010 * 267.24264 * 3 2 1 5 5 H 1.48501 * 109.47267 * 27.24406 * 3 2 1 6 6 H 1.48499 * 109.47007 * 147.24392 * 3 2 1 7 7 C 1.37874 * 120.00207 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99949 * 353.63441 * 7 2 1 9 9 C 1.50703 * 120.00000 * 173.63902 * 7 2 1 10 10 O 1.42896 * 110.77685 * 328.08597 * 9 7 2 11 11 C 1.55153 * 110.71688 * 204.84630 * 9 7 2 12 12 C 1.54908 * 101.61574 * 206.15401 * 11 9 7 13 13 N 1.47421 * 104.83202 * 36.98947 * 12 11 9 14 14 S 1.65604 * 125.64816 * 155.90655 * 13 12 11 15 15 O 1.42098 * 106.40227 * 203.51894 * 14 13 12 16 16 O 1.42101 * 106.40063 * 336.43668 * 14 13 12 17 17 C 1.76204 * 107.21835 * 89.97641 * 14 13 12 18 18 S 1.75877 * 125.20012 * 0.02903 * 17 14 13 19 19 C 1.75880 * 90.98291 * 179.97438 * 18 17 14 20 20 C 1.33408 * 109.60209 * 359.97438 * 19 18 17 21 21 C 1.33439 * 125.19760 * 179.71745 * 17 14 13 22 22 Cl 1.73591 * 122.55409 * 0.02618 * 21 17 14 23 23 C 1.47018 * 108.70520 * 335.87665 * 13 12 11 24 24 H 0.97005 * 120.00410 * 0.02562 * 1 2 3 25 25 H 0.96702 * 114.00450 * 292.95791 * 10 9 7 26 26 H 1.09003 * 111.00290 * 88.06493 * 11 9 7 27 27 H 1.08993 * 111.00688 * 324.24595 * 11 9 7 28 28 H 1.09002 * 110.36922 * 155.83574 * 12 11 9 29 29 H 1.09011 * 110.36905 * 278.04313 * 12 11 9 30 30 H 1.08001 * 125.19972 * 179.97438 * 19 18 17 31 31 H 1.08002 * 122.53565 * 180.02562 * 20 19 18 32 32 H 1.08998 * 109.88850 * 120.47369 * 23 13 12 33 33 H 1.09007 * 109.87853 * 241.64089 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5549 2.0128 -1.3984 5 1 1.4186 2.6689 0.6409 6 1 3.5162 1.4578 0.7575 7 6 2.0045 -1.1940 -0.0005 8 1 1.4696 -2.1264 0.1027 9 6 3.5046 -1.1979 -0.1451 10 8 3.9383 -0.1057 -0.9580 11 6 3.9960 -2.5477 -0.7315 12 6 5.4400 -2.6219 -0.1758 13 7 5.3529 -2.0481 1.1794 14 16 6.3953 -2.3589 2.4280 15 8 5.6807 -2.0844 3.6252 16 8 6.9904 -3.6190 2.1497 17 6 7.6893 -1.1664 2.3364 18 16 7.8134 0.1039 1.1264 19 6 9.3080 0.6866 1.8476 20 6 9.6177 -0.0656 2.9050 21 6 8.7217 -1.0856 3.1779 22 17 8.9284 -2.1786 4.5105 23 6 4.1876 -1.1535 1.2385 24 1 -0.4851 0.8401 -0.0004 25 1 3.6655 -0.1714 -1.8835 26 1 3.9975 -2.5228 -1.8212 27 1 3.3923 -3.3768 -0.3625 28 1 5.7755 -3.6580 -0.1282 29 1 6.1160 -2.0332 -0.7961 30 1 9.8866 1.5251 1.4892 31 1 10.4983 0.1102 3.5050 32 1 3.4938 -1.4986 2.0050 33 1 4.5119 -0.1366 1.4598 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592078978.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:54:53 Heat of formation + Delta-G solvation = -80.110453 kcal Electronic energy + Delta-G solvation = -23287.523021 eV Core-core repulsion = 19593.564816 eV Total energy + Delta-G solvation = -3693.958205 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 337.004 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.65358 -38.46283 -37.02821 -36.46191 -35.71266 -34.92186 -32.41010 -30.18215 -29.80671 -28.58012 -24.92054 -24.68254 -22.17931 -20.51906 -19.93169 -19.53147 -18.32571 -17.46775 -17.15694 -16.53207 -15.81082 -15.24573 -15.09774 -14.94474 -14.47345 -14.12373 -13.92121 -13.65811 -13.28164 -13.14674 -12.59848 -12.29466 -12.13792 -11.98629 -11.91134 -11.81496 -11.76649 -11.65282 -11.42339 -11.30008 -11.17667 -10.82681 -10.66879 -10.33508 -10.24883 -9.61398 -9.29662 -8.83246 -8.75097 -8.56558 -8.56322 -6.23485 -4.35477 0.11492 0.36009 0.85938 1.39174 1.96731 1.97621 3.06379 3.40233 3.49293 3.63527 3.73558 4.44176 4.52855 4.55356 4.73171 4.97618 5.08016 5.20792 5.24216 5.44403 5.59236 5.64495 5.69410 5.83390 6.04674 6.31266 6.45177 6.58725 6.62905 6.71832 6.95574 7.42527 8.08661 8.57021 8.78812 9.37386 10.85220 Molecular weight = 337.00amu Principal moments of inertia in cm(-1) A = 0.018368 B = 0.004767 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.055084 B = 5872.148496 C = 6407.690490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.074 3.926 3 Si 0.945 3.055 4 H -0.291 1.291 5 H -0.324 1.324 6 H -0.269 1.269 7 C -0.551 4.551 8 H 0.084 0.916 9 C 0.224 3.776 10 O -0.562 6.562 11 C -0.141 4.141 12 C 0.115 3.885 13 N -1.006 6.006 14 S 2.719 3.281 15 O -0.935 6.935 16 O -0.943 6.943 17 C -0.790 4.790 18 S 0.275 5.725 19 C -0.180 4.180 20 C -0.152 4.152 21 C 0.072 3.928 22 Cl -0.033 7.033 23 C 0.122 3.878 24 H 0.267 0.733 25 H 0.373 0.627 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.182 0.818 31 H 0.158 0.842 32 H 0.091 0.909 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.958 0.454 0.692 18.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.131 4.131 3 Si 0.780 3.220 4 H -0.218 1.218 5 H -0.256 1.256 6 H -0.195 1.195 7 C -0.589 4.589 8 H 0.102 0.898 9 C 0.183 3.817 10 O -0.370 6.370 11 C -0.181 4.181 12 C -0.010 4.010 13 N -0.848 5.848 14 S 2.804 3.196 15 O -0.925 6.925 16 O -0.934 6.934 17 C -0.989 4.989 18 S 0.540 5.460 19 C -0.318 4.318 20 C -0.183 4.183 21 C 0.028 3.972 22 Cl -0.005 7.005 23 C -0.002 4.002 24 H 0.077 0.923 25 H 0.221 0.779 26 H 0.096 0.904 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.199 0.801 31 H 0.176 0.824 32 H 0.109 0.891 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 18.230 0.454 0.820 18.254 hybrid contribution 1.508 0.888 0.629 1.859 sum 19.737 1.343 1.448 19.836 Atomic orbital electron populations 1.69959 1.06851 1.27887 1.47170 1.25164 0.94904 1.00517 0.92552 0.85756 0.78047 0.80243 0.77958 1.21836 1.25571 1.19482 1.21226 0.88295 0.95497 1.53906 0.89821 1.20065 0.93471 0.82178 0.85984 1.86110 1.79689 1.47234 1.24006 1.23387 0.93340 1.01049 1.00300 1.22146 0.99701 0.97785 0.81340 1.58613 1.39841 1.60079 1.26289 1.01515 0.72104 0.73142 0.72865 1.93611 1.70419 1.85249 1.43232 1.93578 1.77975 1.36919 1.84894 1.36191 1.24568 1.26511 1.11595 1.84679 1.17727 1.19227 1.24340 1.26170 1.01356 1.04216 1.00083 1.20060 1.02003 0.95987 1.00202 1.19353 0.93936 0.93551 0.90385 1.98425 1.96862 1.61160 1.44024 1.22666 0.84638 0.91972 1.00888 0.92333 0.77880 0.90411 0.89992 0.90586 0.91864 0.80069 0.82435 0.89125 0.91779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.42 13.96 55.43 0.77 -24.65 16 2 C 0.07 1.98 5.46 -17.82 -0.10 1.89 16 3 Si 0.94 22.32 24.92 -169.99 -4.24 18.08 16 4 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.32 -7.98 7.11 56.52 0.40 -7.58 16 6 H -0.27 -6.18 5.42 56.52 0.31 -5.88 16 7 C -0.55 -13.92 8.72 -34.44 -0.30 -14.22 16 8 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 9 C 0.22 4.60 0.69 -89.91 -0.06 4.54 16 10 O -0.56 -10.85 8.47 -35.23 -0.30 -11.15 16 11 C -0.14 -2.38 6.21 -24.59 -0.15 -2.53 16 12 C 0.12 1.78 7.10 -2.53 -0.02 1.76 16 13 N -1.01 -17.89 3.50 -111.39 -0.39 -18.27 16 14 S 2.72 48.95 5.41 -107.50 -0.58 48.37 16 15 O -0.93 -19.09 17.60 -57.17 -1.01 -20.10 16 16 O -0.94 -17.77 17.34 -57.17 -0.99 -18.76 16 17 C -0.79 -12.15 6.50 29.05 0.19 -11.96 16 18 S 0.27 3.47 23.12 -107.50 -2.49 0.98 16 19 C -0.18 -1.71 11.23 29.04 0.33 -1.38 16 20 C -0.15 -1.60 10.07 -41.18 -0.41 -2.02 16 21 C 0.07 1.01 6.27 -41.17 -0.26 0.75 16 22 Cl -0.03 -0.47 28.51 -51.86 -1.48 -1.94 16 23 C 0.12 2.49 5.95 -3.04 -0.02 2.47 16 24 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 25 H 0.37 6.10 8.98 45.56 0.41 6.51 16 26 H 0.08 1.13 8.12 -51.93 -0.42 0.71 16 27 H 0.08 1.43 7.99 -51.93 -0.41 1.01 16 28 H 0.08 1.08 7.78 -51.93 -0.40 0.67 16 29 H 0.06 0.85 8.14 -51.92 -0.42 0.42 16 30 H 0.18 1.03 8.06 -52.49 -0.42 0.61 16 31 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.09 1.95 7.81 -51.93 -0.41 1.55 16 33 H 0.06 1.31 6.69 -51.92 -0.35 0.96 16 LS Contribution 318.57 15.07 4.80 4.80 Total: -1.00 -31.77 318.57 -9.20 -40.97 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -2.50 Total: 2.38 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: -0.81 Total: -20.71 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: 0.38 Total: -42.92 kcal Atomic # 8 Polarization: -47.71 SS G_CDS: -2.30 Total: -50.00 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.24 Total: 18.08 kcal Atomic # 16 Polarization: 52.42 SS G_CDS: -3.07 Total: 49.35 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.48 Total: -1.94 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.77 -9.20 -40.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592078978.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.143 kcal (2) G-P(sol) polarization free energy of solvation -31.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds