Wall clock time and date at job start Sat Apr 11 2020 04:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86793 * 119.99873 * 2 1 4 4 H 1.48509 * 109.47143 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47452 * 299.99864 * 3 2 1 6 6 H 1.48495 * 109.47595 * 60.00181 * 3 2 1 7 7 C 1.39949 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99627 * 197.85134 * 7 2 1 9 9 C 1.41391 * 120.00129 * 17.85075 * 7 2 1 10 10 C 1.40718 * 120.24500 * 204.37426 * 9 7 2 11 11 C 1.37613 * 119.74556 * 180.29972 * 10 9 7 12 12 C 1.38639 * 120.24809 * 359.47093 * 11 10 9 13 13 C 1.50702 * 119.74819 * 180.26072 * 12 11 10 14 14 S 1.81403 * 109.46842 * 270.24830 * 13 12 11 15 15 O 1.42098 * 110.54315 * 291.62504 * 14 13 12 16 16 O 1.42102 * 110.54020 * 68.37934 * 14 13 12 17 17 N 1.65593 * 104.44931 * 179.97438 * 14 13 12 18 18 C 1.46503 * 119.99799 * 64.99917 * 17 14 13 19 19 C 1.53004 * 109.47015 * 164.99952 * 18 17 14 20 20 Cl 1.80298 * 109.47387 * 300.00288 * 19 18 17 21 21 Cl 1.80299 * 109.47090 * 60.00158 * 19 18 17 22 22 C 1.38633 * 120.50091 * 0.50905 * 12 11 10 23 23 C 1.37623 * 120.24497 * 359.77202 * 22 12 11 24 24 H 0.97001 * 120.00110 * 359.97438 * 1 2 3 25 25 H 1.07998 * 120.12385 * 0.02562 * 10 9 7 26 26 H 1.07999 * 119.87562 * 179.72347 * 11 10 9 27 27 H 1.08997 * 109.46974 * 30.24473 * 13 12 11 28 28 H 1.08997 * 109.46930 * 150.25367 * 13 12 11 29 29 H 0.97002 * 120.00515 * 245.00071 * 17 14 13 30 30 H 1.09000 * 109.47442 * 285.00111 * 18 17 14 31 31 H 1.08998 * 109.47171 * 45.00103 * 18 17 14 32 32 H 1.09004 * 109.47248 * 179.97438 * 19 18 17 33 33 H 1.07996 * 119.87834 * 179.74460 * 22 12 11 34 34 H 1.08004 * 120.12120 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8835 2.3964 1.2124 7 6 2.0080 -1.2120 -0.0005 8 1 3.0490 -1.2346 0.2862 9 6 1.3520 -2.4069 -0.3764 10 6 1.8259 -3.6500 0.0821 11 6 1.1833 -4.8069 -0.2951 12 6 0.0666 -4.7501 -1.1147 13 6 -0.6319 -6.0238 -1.5161 14 16 0.0985 -6.6558 -3.0516 15 8 -0.2066 -5.7950 -4.1402 16 8 1.4269 -7.1059 -2.8235 17 7 -0.7512 -8.0400 -3.3742 18 6 -2.1805 -7.9660 -3.6870 19 6 -2.6377 -9.2911 -4.3003 20 17 -1.7071 -9.6065 -5.8120 21 17 -2.3479 -10.6284 -3.1262 22 6 -0.4093 -3.5310 -1.5721 23 6 0.2209 -2.3617 -1.2122 24 1 -0.4850 0.8400 0.0004 25 1 2.6932 -3.6962 0.7240 26 1 1.5479 -5.7624 0.0520 27 1 -0.5162 -6.7660 -0.7264 28 1 -1.6915 -5.8228 -1.6737 29 1 -0.3027 -8.8999 -3.3560 30 1 -2.7432 -7.7753 -2.7731 31 1 -2.3557 -7.1575 -4.3968 32 1 -3.7012 -9.2362 -4.5327 33 1 -1.2776 -3.4988 -2.2134 34 1 -0.1513 -1.4130 -1.5699 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867468460.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:52:42 Heat of formation + Delta-G solvation = -83.045157 kcal Electronic energy + Delta-G solvation = -21798.344836 eV Core-core repulsion = 18102.215667 eV Total energy + Delta-G solvation = -3696.129169 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 337.009 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -37.81162 -37.56238 -36.67087 -36.28196 -35.55387 -35.26011 -34.20226 -31.54509 -29.53528 -29.46482 -27.87979 -24.27834 -23.23036 -21.19618 -20.46577 -19.26030 -17.57038 -17.46814 -16.74626 -16.43991 -15.78780 -15.46696 -15.16011 -14.84673 -14.36707 -14.01104 -13.92725 -13.72441 -13.24891 -12.71105 -12.20408 -12.10372 -11.79051 -11.78485 -11.66137 -11.61255 -11.60585 -11.51583 -11.39147 -11.18120 -11.11697 -10.86667 -10.84842 -10.75788 -10.34030 -9.86684 -9.66439 -9.56103 -9.25105 -7.64380 -7.47959 -6.95332 -4.52223 0.52820 1.02184 1.61974 2.59680 2.93375 2.94242 2.99744 3.04711 3.07894 3.67482 3.80792 4.10877 4.19662 4.44829 4.51466 4.88828 4.92654 5.16288 5.26639 5.51692 5.54001 6.01685 6.17232 6.23129 6.80874 6.83265 6.89079 7.07188 7.15744 7.43354 7.63963 7.86728 7.88522 8.10243 8.45436 8.69831 8.77549 9.97827 Molecular weight = 337.01amu Principal moments of inertia in cm(-1) A = 0.031041 B = 0.002503 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.818607 B =11183.916870 C =11318.584963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.074 3.926 3 Si 0.912 3.088 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.446 4.446 8 H 0.084 0.916 9 C 0.117 3.883 10 C -0.225 4.225 11 C -0.067 4.067 12 C -0.239 4.239 13 C -0.518 4.518 14 S 2.575 3.425 15 O -0.959 6.959 16 O -0.959 6.959 17 N -1.128 6.128 18 C 0.107 3.893 19 C 0.055 3.945 20 Cl -0.128 7.128 21 Cl -0.135 7.135 22 C -0.080 4.080 23 C -0.166 4.166 24 H 0.284 0.716 25 H 0.099 0.901 26 H 0.096 0.904 27 H 0.123 0.877 28 H 0.120 0.880 29 H 0.416 0.584 30 H 0.095 0.905 31 H 0.110 0.890 32 H 0.148 0.852 33 H 0.095 0.905 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.912 -14.380 -5.574 17.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.146 4.146 3 Si 0.736 3.264 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.476 4.476 8 H 0.102 0.898 9 C 0.114 3.886 10 C -0.245 4.245 11 C -0.087 4.087 12 C -0.244 4.244 13 C -0.649 4.649 14 S 2.675 3.325 15 O -0.949 6.949 16 O -0.949 6.949 17 N -0.886 5.886 18 C -0.020 4.020 19 C -0.016 4.016 20 Cl -0.101 7.101 21 Cl -0.108 7.108 22 C -0.100 4.100 23 C -0.186 4.186 24 H 0.095 0.905 25 H 0.117 0.883 26 H 0.114 0.886 27 H 0.141 0.859 28 H 0.138 0.862 29 H 0.250 0.750 30 H 0.112 0.888 31 H 0.128 0.872 32 H 0.166 0.834 33 H 0.113 0.887 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.452 -13.932 -6.210 17.438 hybrid contribution -0.076 0.115 0.561 0.577 sum -8.529 -13.817 -5.650 17.192 Atomic orbital electron populations 1.69822 1.07759 1.29685 1.33207 1.26023 0.94818 1.01758 0.92021 0.86191 0.81083 0.80396 0.78744 1.18154 1.19453 1.19809 1.19788 0.98356 0.91159 1.38257 0.89815 1.17747 0.90814 0.92197 0.87860 1.20993 1.03947 0.92544 1.07017 1.20483 0.94609 0.97197 0.96424 1.18086 1.02743 0.90431 1.13185 1.28913 1.10219 1.06980 1.18769 1.06799 0.74750 0.72917 0.78024 1.93534 1.84782 1.65895 1.50685 1.93549 1.34525 1.79743 1.87086 1.56006 1.17828 1.26625 1.88127 1.21820 0.83322 0.95149 1.01736 1.27352 1.00584 0.89787 0.83902 1.98805 1.77586 1.96169 1.37583 1.98793 1.97096 1.53041 1.61901 1.20595 0.98389 0.92379 0.98623 1.21325 0.99364 0.96836 1.01083 0.90498 0.88294 0.88617 0.85877 0.86201 0.74957 0.88757 0.87189 0.83437 0.88694 0.85929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.13 10.95 55.55 0.61 -18.53 16 2 C 0.07 1.76 5.14 -17.34 -0.09 1.67 16 3 Si 0.91 17.80 29.59 -169.99 -5.03 12.77 16 4 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 5 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 6 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.45 -11.37 9.05 -37.74 -0.34 -11.71 16 8 H 0.08 2.04 7.91 -52.49 -0.42 1.63 16 9 C 0.12 3.04 5.57 -106.83 -0.60 2.44 16 10 C -0.22 -5.40 9.80 -38.87 -0.38 -5.78 16 11 C -0.07 -1.49 9.67 -39.66 -0.38 -1.87 16 12 C -0.24 -5.01 5.16 -104.33 -0.54 -5.55 16 13 C -0.52 -7.89 6.19 36.01 0.22 -7.67 16 14 S 2.58 41.19 5.44 -107.50 -0.58 40.61 16 15 O -0.96 -18.23 17.50 -57.54 -1.01 -19.24 16 16 O -0.96 -18.71 18.08 -57.54 -1.04 -19.75 16 17 N -1.13 -12.62 5.41 -10.61 -0.06 -12.67 16 18 C 0.11 0.85 5.89 -4.04 -0.02 0.83 16 19 C 0.05 0.37 4.13 37.16 0.15 0.53 16 20 Cl -0.13 -1.20 28.36 -51.86 -1.47 -2.67 16 21 Cl -0.13 -1.07 27.85 -51.86 -1.44 -2.51 16 22 C -0.08 -1.82 9.67 -39.66 -0.38 -2.20 16 23 C -0.17 -4.20 8.70 -38.87 -0.34 -4.54 16 24 H 0.28 6.26 8.30 -40.82 -0.34 5.92 16 25 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 26 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 27 H 0.12 1.57 8.08 -51.93 -0.42 1.15 16 28 H 0.12 1.46 8.08 -51.93 -0.42 1.04 16 29 H 0.42 4.41 7.84 -34.47 -0.27 4.14 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.11 0.87 7.70 -51.93 -0.40 0.47 16 32 H 0.15 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 34 H 0.12 3.16 6.16 -52.48 -0.32 2.84 16 LS Contribution 337.99 15.07 5.09 5.09 Total: -1.00 -31.80 337.99 -11.13 -42.93 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -3.50 Total: 7.83 kcal Atomic # 6 Polarization: -31.16 SS G_CDS: -2.70 Total: -33.86 kcal Atomic # 7 Polarization: -31.75 SS G_CDS: 0.55 Total: -31.20 kcal Atomic # 8 Polarization: -36.94 SS G_CDS: -2.05 Total: -38.99 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.77 kcal Atomic # 16 Polarization: 41.19 SS G_CDS: -0.58 Total: 40.61 kcal Atomic # 17 Polarization: -2.27 SS G_CDS: -2.91 Total: -5.18 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.80 -11.13 -42.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867468460.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.117 kcal (2) G-P(sol) polarization free energy of solvation -31.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds