Wall clock time and date at job start Sat Apr 11 2020 04:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86793 * 119.99873 * 2 1 4 4 H 1.48509 * 109.47143 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47452 * 299.99864 * 3 2 1 6 6 H 1.48495 * 109.47595 * 60.00181 * 3 2 1 7 7 C 1.39949 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99627 * 197.85134 * 7 2 1 9 9 C 1.41391 * 120.00129 * 17.85075 * 7 2 1 10 10 C 1.40718 * 120.24500 * 204.37426 * 9 7 2 11 11 C 1.37613 * 119.74556 * 180.29972 * 10 9 7 12 12 C 1.38639 * 120.24809 * 359.47093 * 11 10 9 13 13 C 1.50702 * 119.74819 * 180.26072 * 12 11 10 14 14 S 1.81403 * 109.46842 * 270.24830 * 13 12 11 15 15 O 1.42098 * 110.54315 * 291.62504 * 14 13 12 16 16 O 1.42102 * 110.54020 * 68.37934 * 14 13 12 17 17 N 1.65593 * 104.44931 * 179.97438 * 14 13 12 18 18 C 1.46503 * 119.99799 * 64.99917 * 17 14 13 19 19 C 1.53004 * 109.47015 * 164.99952 * 18 17 14 20 20 Cl 1.80298 * 109.47387 * 300.00288 * 19 18 17 21 21 Cl 1.80299 * 109.47090 * 60.00158 * 19 18 17 22 22 C 1.38633 * 120.50091 * 0.50905 * 12 11 10 23 23 C 1.37623 * 120.24497 * 359.77202 * 22 12 11 24 24 H 0.97001 * 120.00110 * 359.97438 * 1 2 3 25 25 H 1.07998 * 120.12385 * 0.02562 * 10 9 7 26 26 H 1.07999 * 119.87562 * 179.72347 * 11 10 9 27 27 H 1.08997 * 109.46974 * 30.24473 * 13 12 11 28 28 H 1.08997 * 109.46930 * 150.25367 * 13 12 11 29 29 H 0.97002 * 120.00515 * 245.00071 * 17 14 13 30 30 H 1.09000 * 109.47442 * 285.00111 * 18 17 14 31 31 H 1.08998 * 109.47171 * 45.00103 * 18 17 14 32 32 H 1.09004 * 109.47248 * 179.97438 * 19 18 17 33 33 H 1.07996 * 119.87834 * 179.74460 * 22 12 11 34 34 H 1.08004 * 120.12120 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8835 2.3964 1.2124 7 6 2.0080 -1.2120 -0.0005 8 1 3.0490 -1.2346 0.2862 9 6 1.3520 -2.4069 -0.3764 10 6 1.8259 -3.6500 0.0821 11 6 1.1833 -4.8069 -0.2951 12 6 0.0666 -4.7501 -1.1147 13 6 -0.6319 -6.0238 -1.5161 14 16 0.0985 -6.6558 -3.0516 15 8 -0.2066 -5.7950 -4.1402 16 8 1.4269 -7.1059 -2.8235 17 7 -0.7512 -8.0400 -3.3742 18 6 -2.1805 -7.9660 -3.6870 19 6 -2.6377 -9.2911 -4.3003 20 17 -1.7071 -9.6065 -5.8120 21 17 -2.3479 -10.6284 -3.1262 22 6 -0.4093 -3.5310 -1.5721 23 6 0.2209 -2.3617 -1.2122 24 1 -0.4850 0.8400 0.0004 25 1 2.6932 -3.6962 0.7240 26 1 1.5479 -5.7624 0.0520 27 1 -0.5162 -6.7660 -0.7264 28 1 -1.6915 -5.8228 -1.6737 29 1 -0.3027 -8.8999 -3.3560 30 1 -2.7432 -7.7753 -2.7731 31 1 -2.3557 -7.1575 -4.3968 32 1 -3.7012 -9.2362 -4.5327 33 1 -1.2776 -3.4988 -2.2134 34 1 -0.1513 -1.4130 -1.5699 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867468460.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:52:41 Heat of formation + Delta-G solvation = -104.450898 kcal Electronic energy + Delta-G solvation = -21799.273059 eV Core-core repulsion = 18102.215667 eV Total energy + Delta-G solvation = -3697.057392 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 337.009 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -39.57073 -38.28291 -37.99281 -36.92353 -36.87746 -36.08236 -35.94248 -33.19950 -31.26395 -30.25581 -29.51882 -25.97643 -23.87017 -23.00224 -22.15698 -20.45366 -19.29335 -18.74772 -17.69833 -17.52585 -17.13112 -16.67366 -16.21687 -16.14218 -15.70796 -15.54795 -15.44964 -14.52911 -14.39662 -13.93945 -13.88853 -13.62701 -13.45721 -13.23304 -13.10222 -13.04254 -12.96446 -12.76426 -12.57298 -12.31492 -12.16696 -12.01300 -11.85216 -11.74298 -11.58037 -11.45606 -11.33865 -11.03518 -10.56289 -9.45769 -9.26573 -8.71369 -6.40121 -0.75323 0.46623 0.88832 1.06017 1.08070 1.38344 1.48723 1.53638 1.86073 2.18475 2.63438 2.88459 3.08727 3.29528 3.66385 3.74460 3.85036 4.08259 4.32781 4.36275 4.45793 4.52201 4.63562 4.77240 5.00308 5.09401 5.26906 5.35670 5.62258 5.85112 5.94638 6.03282 6.05236 6.29561 6.61741 6.85817 6.93796 8.25115 Molecular weight = 337.01amu Principal moments of inertia in cm(-1) A = 0.031041 B = 0.002503 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.818607 B =11183.916870 C =11318.584963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.035 3.965 3 Si 0.984 3.016 4 H -0.259 1.259 5 H -0.263 1.263 6 H -0.262 1.262 7 C -0.490 4.490 8 H 0.079 0.921 9 C 0.084 3.916 10 C -0.247 4.247 11 C -0.078 4.078 12 C -0.233 4.233 13 C -0.521 4.521 14 S 2.602 3.398 15 O -0.992 6.992 16 O -0.998 6.998 17 N -1.116 6.116 18 C 0.090 3.910 19 C 0.062 3.938 20 Cl -0.155 7.155 21 Cl -0.143 7.143 22 C -0.089 4.089 23 C -0.195 4.195 24 H 0.292 0.708 25 H 0.103 0.897 26 H 0.124 0.876 27 H 0.157 0.843 28 H 0.160 0.840 29 H 0.421 0.579 30 H 0.133 0.867 31 H 0.114 0.886 32 H 0.188 0.812 33 H 0.120 0.880 34 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.646 -15.900 -5.744 19.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.181 4.181 3 Si 0.804 3.196 4 H -0.183 1.183 5 H -0.188 1.188 6 H -0.187 1.187 7 C -0.519 4.519 8 H 0.097 0.903 9 C 0.081 3.919 10 C -0.267 4.267 11 C -0.098 4.098 12 C -0.237 4.237 13 C -0.652 4.652 14 S 2.701 3.299 15 O -0.982 6.982 16 O -0.988 6.988 17 N -0.878 5.878 18 C -0.036 4.036 19 C -0.008 4.008 20 Cl -0.129 7.129 21 Cl -0.117 7.117 22 C -0.108 4.108 23 C -0.214 4.214 24 H 0.103 0.897 25 H 0.121 0.879 26 H 0.142 0.858 27 H 0.175 0.825 28 H 0.178 0.822 29 H 0.258 0.742 30 H 0.150 0.850 31 H 0.132 0.868 32 H 0.205 0.795 33 H 0.138 0.862 34 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.179 -15.438 -6.362 19.555 hybrid contribution 0.308 0.300 0.559 0.705 sum -9.871 -15.137 -5.803 18.980 Atomic orbital electron populations 1.69853 1.08997 1.30933 1.34058 1.26814 0.95576 1.04646 0.91083 0.85131 0.79391 0.75939 0.79125 1.18269 1.18792 1.18693 1.19976 0.98525 0.92474 1.40931 0.90300 1.18092 0.91742 0.93229 0.88811 1.21227 1.04697 0.93024 1.07712 1.20893 0.94801 0.97656 0.96413 1.18544 1.01845 0.92296 1.11004 1.28989 1.11937 1.04894 1.19389 1.05408 0.73904 0.73112 0.77463 1.93506 1.85128 1.67513 1.52005 1.93506 1.37250 1.80561 1.87511 1.55486 1.19402 1.25121 1.87751 1.22303 0.81363 0.96006 1.03913 1.27672 1.02083 0.88653 0.82401 1.98812 1.78410 1.96280 1.39382 1.98802 1.97188 1.53573 1.62110 1.20953 0.98934 0.92314 0.98634 1.21344 1.00337 0.97416 1.02338 0.89723 0.87917 0.85810 0.82482 0.82220 0.74248 0.84963 0.86803 0.79530 0.86241 0.87515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.27 10.95 21.83 0.24 -41.03 16 2 C 0.04 1.74 5.14 85.26 0.44 2.18 16 3 Si 0.98 37.40 29.59 68.60 2.03 39.43 16 4 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 5 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 6 H -0.26 -9.43 7.11 99.48 0.71 -8.73 16 7 C -0.49 -26.24 9.05 23.46 0.21 -26.02 16 8 H 0.08 4.08 7.91 -2.91 -0.02 4.06 16 9 C 0.08 4.55 5.57 -21.29 -0.12 4.44 16 10 C -0.25 -12.17 9.80 22.73 0.22 -11.94 16 11 C -0.08 -3.38 9.67 22.22 0.21 -3.17 16 12 C -0.23 -9.31 5.16 -19.67 -0.10 -9.41 16 13 C -0.52 -13.73 6.19 71.24 0.44 -13.29 16 14 S 2.60 76.32 5.44 -56.49 -0.31 76.01 16 15 O -0.99 -35.79 17.50 -127.65 -2.23 -38.02 16 16 O -1.00 -37.34 18.08 -127.65 -2.31 -39.64 16 17 N -1.12 -21.17 5.41 -187.48 -1.01 -22.18 16 18 C 0.09 1.04 5.89 86.38 0.51 1.55 16 19 C 0.06 0.61 4.13 71.98 0.30 0.91 16 20 Cl -0.16 -2.57 28.36 -2.72 -0.08 -2.64 16 21 Cl -0.14 -1.82 27.85 -2.72 -0.08 -1.89 16 22 C -0.09 -3.98 9.67 22.22 0.21 -3.76 16 23 C -0.19 -10.16 8.70 22.73 0.20 -9.96 16 24 H 0.29 13.21 8.30 -92.71 -0.77 12.44 16 25 H 0.10 4.77 8.06 -2.91 -0.02 4.75 16 26 H 0.12 4.53 8.06 -2.91 -0.02 4.51 16 27 H 0.16 3.18 8.08 -2.39 -0.02 3.16 16 28 H 0.16 2.99 8.08 -2.39 -0.02 2.97 16 29 H 0.42 7.69 7.84 -96.74 -0.76 6.93 16 30 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.11 1.34 7.70 -2.39 -0.02 1.32 16 32 H 0.19 0.42 8.14 -2.38 -0.02 0.40 16 33 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 34 H 0.11 5.78 6.16 -2.91 -0.02 5.76 16 Total: -1.00 -72.86 337.99 -0.83 -73.70 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: 0.39 Total: 24.75 kcal Atomic # 6 Polarization: -71.00 SS G_CDS: 2.53 Total: -68.48 kcal Atomic # 7 Polarization: -62.44 SS G_CDS: -0.77 Total: -63.21 kcal Atomic # 8 Polarization: -73.12 SS G_CDS: -4.54 Total: -77.67 kcal Atomic # 14 Polarization: 37.40 SS G_CDS: 2.03 Total: 39.43 kcal Atomic # 16 Polarization: 76.32 SS G_CDS: -0.31 Total: 76.01 kcal Atomic # 17 Polarization: -4.38 SS G_CDS: -0.15 Total: -4.54 kcal Total: -72.86 -0.83 -73.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867468460.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.754 kcal (2) G-P(sol) polarization free energy of solvation -72.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds