Wall clock time and date at job start Sat Apr 11 2020 04:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.27567 * 126.41637 * 2 1 4 4 N 1.39153 * 113.16381 * 180.18347 * 3 2 1 5 5 C 1.39524 * 124.43762 * 179.77112 * 4 3 2 6 6 C 1.39004 * 119.69447 * 359.71739 * 5 4 3 7 7 C 1.38387 * 119.12799 * 179.97438 * 6 5 4 8 8 C 1.38795 * 118.50514 * 0.02562 * 7 6 5 9 9 C 1.38220 * 119.29712 * 359.97438 * 8 7 6 10 10 Br 1.89106 * 119.58475 * 180.02562 * 9 8 7 11 11 N 1.31984 * 120.82865 * 0.02562 * 9 8 7 12 12 C 1.34957 * 111.11859 * 359.50697 * 4 3 2 13 13 O 1.21284 * 127.49556 * 180.30351 * 12 4 3 14 14 C 1.51435 * 126.41511 * 179.66096 * 2 1 3 15 15 H 1.09005 * 110.60686 * 61.48540 * 14 2 1 16 16 C 1.53004 * 110.61169 * 298.51925 * 14 2 1 17 17 C 1.50696 * 109.47522 * 179.41921 * 16 14 2 18 18 H 1.08009 * 119.99859 * 359.97438 * 17 16 14 19 19 C 1.37870 * 120.00405 * 179.97438 * 17 16 14 20 20 N 1.31518 * 119.99927 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00426 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47020 * 89.99857 * 21 19 17 23 23 H 1.48495 * 109.47306 * 210.00001 * 21 19 17 24 24 H 1.48504 * 109.46688 * 330.00361 * 21 19 17 25 25 H 1.09007 * 109.46848 * 270.33744 * 1 2 3 26 26 H 1.09001 * 109.46724 * 30.33620 * 1 2 3 27 27 H 1.08996 * 109.47155 * 150.33900 * 1 2 3 28 28 H 1.08003 * 120.43392 * 0.02562 * 6 5 4 29 29 H 1.08003 * 120.74775 * 180.27116 * 7 6 5 30 30 H 1.08002 * 120.34827 * 179.97438 * 8 7 6 31 31 H 1.09001 * 109.46826 * 299.41973 * 16 14 2 32 32 H 1.08998 * 109.47272 * 59.41555 * 16 14 2 33 33 H 0.96996 * 120.00224 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2644 1.0266 0.0000 4 7 3.6189 0.7076 -0.0041 5 6 4.6506 1.6468 -0.0096 6 6 4.3470 3.0032 -0.0172 7 6 5.3796 3.9246 -0.0220 8 6 6.6859 3.4556 -0.0196 9 6 6.9151 2.0925 -0.0120 10 35 8.6917 1.4446 -0.0079 11 7 5.9096 1.2376 -0.0075 12 6 3.8036 -0.6293 0.0037 13 8 4.8578 -1.2288 0.0079 14 6 2.4061 -1.2186 0.0072 15 1 2.2418 -1.8218 -0.8858 16 6 2.1755 -2.0505 1.2705 17 6 3.0712 -3.2622 1.2445 18 1 3.7379 -3.4231 0.4102 19 6 3.0396 -4.1653 2.2858 20 7 2.2274 -3.9696 3.3015 21 14 4.1493 -5.6676 2.2533 22 1 5.4438 -5.3409 2.9036 23 1 3.4952 -6.7821 2.9848 24 1 4.3912 -6.0738 0.8455 25 1 -0.3633 0.0061 1.0277 26 1 -0.3633 0.8870 -0.5191 27 1 -0.3633 -0.8930 -0.5085 28 1 3.3188 3.3337 -0.0184 29 1 5.1736 4.9848 -0.0235 30 1 7.5144 4.1484 -0.0236 31 1 2.4050 -1.4478 2.1492 32 1 1.1340 -2.3694 1.3105 33 1 2.2049 -4.6052 4.0339 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871952220.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:53:22 Heat of formation + Delta-G solvation = 67.531422 kcal Electronic energy + Delta-G solvation = -20558.782273 eV Core-core repulsion = 17246.727638 eV Total energy + Delta-G solvation = -3312.054635 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 337.017 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.37243 -39.85012 -36.97615 -34.61167 -33.06353 -32.84326 -31.56515 -30.51425 -29.65808 -27.92215 -26.17867 -23.87225 -23.21933 -22.17766 -20.15162 -19.56239 -17.83030 -16.55158 -16.43955 -15.93210 -15.85072 -14.86441 -14.65193 -14.52437 -14.26408 -13.81049 -13.36309 -13.31239 -13.24508 -12.42007 -12.39854 -12.16408 -11.93346 -11.60993 -11.46062 -11.06938 -10.87801 -10.68937 -10.45154 -10.35169 -10.12372 -9.85667 -9.67204 -9.41717 -9.32041 -8.82481 -8.40539 -8.00428 -6.06737 -4.08422 0.78976 1.08300 1.27739 1.94490 2.31076 2.99761 3.35328 3.41390 3.46609 3.78455 4.12196 4.38979 4.49560 4.54473 4.81036 4.88851 4.95998 5.22231 5.28036 5.32556 5.63000 5.63189 5.68134 5.83401 5.92871 5.98290 6.09686 6.27344 6.45158 6.77410 7.31599 7.36228 7.46020 7.92023 8.02363 8.21832 8.39076 8.97196 9.57052 11.04470 Molecular weight = 337.02amu Principal moments of inertia in cm(-1) A = 0.011789 B = 0.004454 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.455782 B = 6285.493742 C = 8350.884888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.128 3.872 3 N -0.259 5.259 4 N -0.424 5.424 5 C 0.407 3.593 6 C -0.173 4.173 7 C -0.046 4.046 8 C -0.176 4.176 9 C 0.161 3.839 10 Br -0.007 7.007 11 N -0.473 5.473 12 C 0.507 3.493 13 O -0.426 6.426 14 C -0.131 4.131 15 H 0.129 0.871 16 C 0.054 3.946 17 C -0.519 4.519 18 H 0.066 0.934 19 C 0.061 3.939 20 N -0.897 5.897 21 Si 0.896 3.104 22 H -0.280 1.280 23 H -0.287 1.287 24 H -0.272 1.272 25 H 0.095 0.905 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.152 0.848 29 H 0.149 0.851 30 H 0.145 0.855 31 H 0.020 0.980 32 H 0.042 0.958 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.138 17.531 -8.038 19.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.064 4.064 3 N -0.066 5.066 4 N -0.236 5.236 5 C 0.175 3.825 6 C -0.196 4.196 7 C -0.073 4.073 8 C -0.201 4.201 9 C -0.057 4.057 10 Br 0.077 6.923 11 N -0.189 5.189 12 C 0.294 3.706 13 O -0.288 6.288 14 C -0.155 4.155 15 H 0.146 0.854 16 C 0.016 3.984 17 C -0.557 4.557 18 H 0.084 0.916 19 C -0.140 4.140 20 N -0.536 5.536 21 Si 0.724 3.276 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.197 1.197 25 H 0.113 0.887 26 H 0.099 0.901 27 H 0.110 0.890 28 H 0.170 0.830 29 H 0.166 0.834 30 H 0.163 0.837 31 H 0.038 0.962 32 H 0.060 0.940 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.726 16.895 -7.872 19.228 hybrid contribution 0.206 -0.672 0.198 0.730 sum 4.932 16.223 -7.674 18.612 Atomic orbital electron populations 1.20394 0.84384 1.04089 1.04560 1.25736 0.97621 0.91847 0.91165 1.74603 0.86768 1.26628 1.18588 1.47235 1.02293 1.05887 1.68217 1.17807 0.84856 0.86637 0.93160 1.21720 1.01996 0.91165 1.04764 1.21438 0.91190 1.00320 0.94324 1.21840 0.98655 0.94218 1.05343 1.22427 0.92182 0.90393 1.00720 1.96777 1.08062 1.90174 1.97294 1.66827 0.97695 1.38869 1.15520 1.21634 0.92423 0.81017 0.75567 1.90776 1.30905 1.64601 1.42512 1.22177 0.89996 0.96233 1.07101 0.85385 1.18942 0.98944 0.93414 0.87104 1.21168 1.22117 1.06049 1.06363 0.91551 1.24936 0.95513 0.98352 0.95207 1.69944 1.37631 1.36935 1.09120 0.86508 0.80749 0.82016 0.78323 1.20578 1.21249 1.19659 0.88707 0.90101 0.89013 0.83028 0.83380 0.83678 0.96155 0.93982 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 10.49 36.01 0.38 -0.42 16 2 C 0.13 2.02 6.93 -78.72 -0.55 1.48 16 3 N -0.26 -4.36 11.15 35.53 0.40 -3.96 16 4 N -0.42 -8.40 3.71 -11.04 -0.04 -8.44 16 5 C 0.41 7.45 7.50 -154.57 -1.16 6.29 16 6 C -0.17 -2.37 9.65 -39.24 -0.38 -2.74 16 7 C -0.05 -0.49 10.17 -39.32 -0.40 -0.89 16 8 C -0.18 -2.06 9.83 -39.38 -0.39 -2.45 16 9 C 0.16 2.53 7.16 -17.49 -0.13 2.40 16 10 Br -0.01 -0.10 33.86 -68.01 -2.30 -2.41 16 11 N -0.47 -9.25 8.87 -10.73 -0.10 -9.34 16 12 C 0.51 11.55 7.49 -10.43 -0.08 11.48 16 13 O -0.43 -11.22 15.57 5.55 0.09 -11.13 16 14 C -0.13 -2.63 3.01 -92.08 -0.28 -2.91 16 15 H 0.13 2.38 8.14 -51.93 -0.42 1.95 16 16 C 0.05 1.32 4.52 -27.88 -0.13 1.19 16 17 C -0.52 -14.59 8.36 -34.45 -0.29 -14.88 16 18 H 0.07 1.92 7.06 -52.48 -0.37 1.55 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.90 -26.40 13.29 55.43 0.74 -25.67 16 21 Si 0.90 22.45 29.54 -169.99 -5.02 17.43 16 22 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 25 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.15 1.83 7.60 -52.48 -0.40 1.43 16 29 H 0.15 0.95 8.06 -52.48 -0.42 0.53 16 30 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 31 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 315.81 15.07 4.76 4.76 Total: -1.00 -34.74 315.81 -8.25 -42.99 By element: Atomic # 1 Polarization: -1.14 SS G_CDS: -3.29 Total: -4.43 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -3.49 Total: 0.20 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: 1.00 Total: -47.41 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.09 Total: -11.13 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Atomic # 35 Polarization: -0.10 SS G_CDS: -2.30 Total: -2.41 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -34.74 -8.25 -42.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871952220.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.522 kcal (2) G-P(sol) polarization free energy of solvation -34.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds