Wall clock time and date at job start Sat Apr 11 2020 04:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99748 * 2 1 4 4 H 1.48506 * 109.46982 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46919 * 299.99415 * 3 2 1 6 6 H 1.48497 * 109.47331 * 59.99703 * 3 2 1 7 7 C 1.37876 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00087 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99824 * 0.02562 * 7 2 1 10 10 C 1.50706 * 109.47197 * 180.02562 * 9 7 2 11 11 C 1.38229 * 120.00305 * 90.00002 * 10 9 7 12 12 C 1.38235 * 120.00310 * 180.02562 * 11 10 9 13 13 C 1.38234 * 119.99829 * 0.02562 * 12 11 10 14 14 S 1.76199 * 120.00019 * 179.97438 * 13 12 11 15 15 O 1.42100 * 106.40198 * 203.53954 * 14 13 12 16 16 O 1.42096 * 106.39959 * 336.46020 * 14 13 12 17 17 N 1.65599 * 107.21658 * 90.00010 * 14 13 12 18 18 C 1.46501 * 120.00418 * 65.00023 * 17 14 13 19 19 C 1.52998 * 109.47437 * 164.99857 * 18 17 14 20 20 Cl 1.80296 * 109.46999 * 300.00186 * 19 18 17 21 21 Cl 1.80303 * 109.47031 * 60.00005 * 19 18 17 22 22 C 1.38238 * 119.99674 * 0.25365 * 13 12 11 23 23 C 1.38228 * 120.00121 * 359.49261 * 22 13 12 24 24 H 0.96999 * 120.00028 * 0.02562 * 1 2 3 25 25 H 1.08991 * 109.47293 * 60.00055 * 9 7 2 26 26 H 1.09005 * 109.46927 * 299.99890 * 9 7 2 27 27 H 1.08005 * 119.99920 * 359.97438 * 11 10 9 28 28 H 1.07999 * 120.00165 * 179.97438 * 12 11 10 29 29 H 0.97001 * 119.99869 * 244.99817 * 17 14 13 30 30 H 1.09005 * 109.46517 * 285.00137 * 18 17 14 31 31 H 1.08996 * 109.46781 * 44.99791 * 18 17 14 32 32 H 1.08992 * 109.47009 * 179.97438 * 19 18 17 33 33 H 1.08004 * 119.99572 * 179.72682 * 22 13 12 34 34 H 1.08004 * 120.00393 * 180.23620 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2304 -3.6446 0.0018 11 6 2.6786 -4.1695 1.1995 12 6 3.5773 -5.2198 1.2006 13 6 4.0281 -5.7450 0.0040 14 16 5.1741 -7.0834 0.0055 15 8 5.8500 -7.0342 -1.2435 16 8 5.8472 -7.0338 1.2559 17 7 4.2914 -8.4845 0.0047 18 6 3.4485 -8.8187 -1.1460 19 6 3.0468 -10.2932 -1.0729 20 17 4.5278 -11.3213 -1.0940 21 17 2.1298 -10.5914 0.4506 22 6 3.5843 -5.2163 -1.1936 23 6 2.6816 -4.1694 -1.1948 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6240 -2.5566 0.8903 27 1 2.3273 -3.7583 2.1344 28 1 3.9278 -5.6296 2.1364 29 1 4.3325 -9.0840 0.7662 30 1 2.5532 -8.1970 -1.1332 31 1 4.0029 -8.6384 -2.0670 32 1 2.4194 -10.5416 -1.9288 33 1 3.9399 -5.6237 -2.1285 34 1 2.3319 -3.7589 -2.1305 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885275364.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:53:37 Heat of formation + Delta-G solvation = -80.939194 kcal Electronic energy + Delta-G solvation = -21791.421481 eV Core-core repulsion = 18095.383633 eV Total energy + Delta-G solvation = -3696.037848 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 337.009 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -38.86554 -37.68756 -37.18982 -36.35855 -35.84804 -35.48442 -33.71989 -31.60558 -30.63734 -29.70596 -27.47987 -23.78244 -23.38243 -22.37967 -20.96951 -19.70027 -18.07559 -17.45907 -16.85428 -16.48824 -16.25024 -15.45619 -15.18106 -15.04574 -14.49094 -14.40863 -13.93993 -13.87412 -13.39498 -13.16395 -12.87446 -12.28955 -12.14231 -12.09143 -12.00896 -11.75007 -11.61520 -11.52959 -11.46745 -11.19112 -10.99998 -10.96502 -10.94567 -10.57782 -10.53572 -9.98492 -9.75142 -9.64939 -8.64949 -8.57471 -8.44252 -6.20392 -4.25501 0.38049 0.94185 1.25862 1.54445 1.73690 2.90584 3.21144 3.29393 3.34476 3.55118 3.71108 4.02927 4.12310 4.34750 4.40991 4.78361 4.87570 5.10799 5.16373 5.17331 5.27925 5.67045 5.75591 5.85790 6.18954 6.27028 6.43992 6.60199 6.78409 6.85953 7.24738 7.38040 7.54445 7.74876 8.09537 8.79640 9.39840 10.89650 Molecular weight = 337.01amu Principal moments of inertia in cm(-1) A = 0.022081 B = 0.002739 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.736478 B =10219.956818 C =10789.854022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.518 4.518 8 H 0.060 0.940 9 C 0.039 3.961 10 C 0.028 3.972 11 C -0.145 4.145 12 C -0.020 4.020 13 C -0.705 4.705 14 S 2.700 3.300 15 O -0.960 6.960 16 O -0.959 6.959 17 N -1.119 6.119 18 C 0.109 3.891 19 C 0.054 3.946 20 Cl -0.130 7.130 21 Cl -0.130 7.130 22 C -0.027 4.027 23 C -0.145 4.145 24 H 0.264 0.736 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.129 0.871 28 H 0.130 0.870 29 H 0.420 0.580 30 H 0.101 0.899 31 H 0.112 0.888 32 H 0.150 0.850 33 H 0.130 0.870 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.964 -22.121 -2.703 22.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.556 4.556 8 H 0.078 0.922 9 C 0.002 3.998 10 C 0.028 3.972 11 C -0.164 4.164 12 C -0.039 4.039 13 C -0.795 4.795 14 S 2.793 3.207 15 O -0.950 6.950 16 O -0.950 6.950 17 N -0.879 5.879 18 C -0.019 4.019 19 C -0.017 4.017 20 Cl -0.104 7.104 21 Cl -0.103 7.103 22 C -0.046 4.046 23 C -0.164 4.164 24 H 0.073 0.927 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.147 0.853 28 H 0.148 0.852 29 H 0.256 0.744 30 H 0.119 0.881 31 H 0.130 0.870 32 H 0.168 0.832 33 H 0.148 0.852 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.764 -21.949 -2.756 22.629 hybrid contribution -0.350 1.021 0.415 1.156 sum 4.414 -20.928 -2.341 21.516 Atomic orbital electron populations 1.69952 1.06075 1.27057 1.49856 1.25004 0.94931 0.99423 0.94783 0.86426 0.80158 0.83082 0.77772 1.19549 1.20781 1.20786 1.21004 0.93142 0.89434 1.51984 0.92219 1.18551 0.92656 0.89539 0.99065 1.21135 0.92110 0.91905 0.92065 1.21261 0.99048 0.97144 0.98938 1.20781 0.92944 0.94399 0.95783 1.30275 1.25341 1.23908 0.99995 1.01550 0.73259 0.72415 0.73495 1.93565 1.70656 1.86349 1.44458 1.93581 1.71322 1.86288 1.43789 1.55625 1.64377 1.40513 1.27371 1.21855 0.97243 0.91838 0.90917 1.27345 0.88266 0.93820 0.92258 1.98802 1.41729 1.71488 1.98359 1.98805 1.75213 1.96566 1.39762 1.20780 0.93360 0.94852 0.95628 1.21246 0.99043 0.97202 0.98902 0.92658 0.94685 0.94701 0.85304 0.85194 0.74370 0.88138 0.87044 0.83233 0.85222 0.85298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.18 13.29 55.43 0.74 -24.44 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -13.80 9.09 -34.44 -0.31 -14.11 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.04 0.92 5.10 -29.03 -0.15 0.77 16 10 C 0.03 0.56 5.07 -104.62 -0.53 0.03 16 11 C -0.14 -2.59 9.70 -39.59 -0.38 -2.98 16 12 C -0.02 -0.30 9.52 -39.58 -0.38 -0.68 16 13 C -0.71 -10.27 5.95 -39.58 -0.24 -10.50 16 14 S 2.70 34.64 5.74 -107.50 -0.62 34.02 16 15 O -0.96 -14.21 16.75 -57.17 -0.96 -15.17 16 16 O -0.96 -14.92 17.28 -57.17 -0.99 -15.91 16 17 N -1.12 -10.15 5.52 -10.61 -0.06 -10.21 16 18 C 0.11 0.72 5.98 -4.04 -0.02 0.70 16 19 C 0.05 0.31 4.13 37.16 0.15 0.46 16 20 Cl -0.13 -0.99 28.36 -51.86 -1.47 -2.46 16 21 Cl -0.13 -0.96 27.85 -51.86 -1.44 -2.41 16 22 C -0.03 -0.40 9.52 -39.58 -0.38 -0.77 16 23 C -0.14 -2.52 9.70 -39.59 -0.38 -2.91 16 24 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 25 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 26 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 27 H 0.13 2.21 8.06 -52.48 -0.42 1.78 16 28 H 0.13 1.76 7.62 -52.49 -0.40 1.36 16 29 H 0.42 3.46 7.88 -34.47 -0.27 3.19 16 30 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.11 0.65 7.75 -51.93 -0.40 0.25 16 32 H 0.15 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.13 1.57 7.61 -52.48 -0.40 1.17 16 34 H 0.13 2.12 8.06 -52.48 -0.42 1.70 16 LS Contribution 340.35 15.07 5.13 5.13 Total: -1.00 -32.75 340.35 -10.95 -43.70 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -3.55 Total: 0.33 kcal Atomic # 6 Polarization: -25.71 SS G_CDS: -2.72 Total: -28.43 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 0.68 Total: -34.65 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -1.95 Total: -31.08 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 34.64 SS G_CDS: -0.62 Total: 34.02 kcal Atomic # 17 Polarization: -1.96 SS G_CDS: -2.91 Total: -4.87 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.75 -10.95 -43.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885275364.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.239 kcal (2) G-P(sol) polarization free energy of solvation -32.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds