Wall clock time and date at job start Sat Apr 11 2020 04:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99748 * 2 1 4 4 H 1.48506 * 109.46982 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46919 * 299.99415 * 3 2 1 6 6 H 1.48497 * 109.47331 * 59.99703 * 3 2 1 7 7 C 1.37876 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00087 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99824 * 0.02562 * 7 2 1 10 10 C 1.50706 * 109.47197 * 180.02562 * 9 7 2 11 11 C 1.38229 * 120.00305 * 90.00002 * 10 9 7 12 12 C 1.38235 * 120.00310 * 180.02562 * 11 10 9 13 13 C 1.38234 * 119.99829 * 0.02562 * 12 11 10 14 14 S 1.76199 * 120.00019 * 179.97438 * 13 12 11 15 15 O 1.42100 * 106.40198 * 203.53954 * 14 13 12 16 16 O 1.42096 * 106.39959 * 336.46020 * 14 13 12 17 17 N 1.65599 * 107.21658 * 90.00010 * 14 13 12 18 18 C 1.46501 * 120.00418 * 65.00023 * 17 14 13 19 19 C 1.52998 * 109.47437 * 164.99857 * 18 17 14 20 20 Cl 1.80296 * 109.46999 * 300.00186 * 19 18 17 21 21 Cl 1.80303 * 109.47031 * 60.00005 * 19 18 17 22 22 C 1.38238 * 119.99674 * 0.25365 * 13 12 11 23 23 C 1.38228 * 120.00121 * 359.49261 * 22 13 12 24 24 H 0.96999 * 120.00028 * 0.02562 * 1 2 3 25 25 H 1.08991 * 109.47293 * 60.00055 * 9 7 2 26 26 H 1.09005 * 109.46927 * 299.99890 * 9 7 2 27 27 H 1.08005 * 119.99920 * 359.97438 * 11 10 9 28 28 H 1.07999 * 120.00165 * 179.97438 * 12 11 10 29 29 H 0.97001 * 119.99869 * 244.99817 * 17 14 13 30 30 H 1.09005 * 109.46517 * 285.00137 * 18 17 14 31 31 H 1.08996 * 109.46781 * 44.99791 * 18 17 14 32 32 H 1.08992 * 109.47009 * 179.97438 * 19 18 17 33 33 H 1.08004 * 119.99572 * 179.72682 * 22 13 12 34 34 H 1.08004 * 120.00393 * 180.23620 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2304 -3.6446 0.0018 11 6 2.6786 -4.1695 1.1995 12 6 3.5773 -5.2198 1.2006 13 6 4.0281 -5.7450 0.0040 14 16 5.1741 -7.0834 0.0055 15 8 5.8500 -7.0342 -1.2435 16 8 5.8472 -7.0338 1.2559 17 7 4.2914 -8.4845 0.0047 18 6 3.4485 -8.8187 -1.1460 19 6 3.0468 -10.2932 -1.0729 20 17 4.5278 -11.3213 -1.0940 21 17 2.1298 -10.5914 0.4506 22 6 3.5843 -5.2163 -1.1936 23 6 2.6816 -4.1694 -1.1948 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6240 -2.5566 0.8903 27 1 2.3273 -3.7583 2.1344 28 1 3.9278 -5.6296 2.1364 29 1 4.3325 -9.0840 0.7662 30 1 2.5532 -8.1970 -1.1332 31 1 4.0029 -8.6384 -2.0670 32 1 2.4194 -10.5416 -1.9288 33 1 3.9399 -5.6237 -2.1285 34 1 2.3319 -3.7589 -2.1305 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885275364.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:53:36 Heat of formation + Delta-G solvation = -102.461699 kcal Electronic energy + Delta-G solvation = -21792.354767 eV Core-core repulsion = 18095.383633 eV Total energy + Delta-G solvation = -3696.971134 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 337.009 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.21698 -38.44767 -38.10938 -36.98380 -36.87318 -36.14089 -35.58618 -33.30844 -31.93882 -30.30497 -29.23960 -25.58935 -23.99207 -23.61931 -22.46808 -20.68672 -19.13398 -18.61287 -18.45956 -17.62130 -16.93222 -16.73787 -16.51263 -15.95697 -15.81408 -15.62865 -15.20305 -14.63716 -14.53686 -14.40804 -14.01781 -13.89183 -13.40552 -13.36851 -13.22545 -13.16697 -13.10220 -12.68428 -12.64906 -12.17994 -12.13190 -12.01989 -12.00152 -11.73364 -11.64659 -11.46173 -11.43579 -10.65613 -10.65540 -9.94377 -9.93494 -8.27121 -6.39571 -0.67208 -0.05330 0.42229 0.46319 1.06492 1.37352 1.39246 1.51536 1.96954 2.34993 2.56803 2.81467 3.05767 3.05823 3.32703 3.79069 3.91490 4.00517 4.17934 4.25880 4.38253 4.46470 4.50601 4.63046 4.83675 4.93592 5.12316 5.26704 5.27591 5.35684 5.67790 5.87538 5.88907 5.94237 6.10663 6.72817 7.29736 8.83070 Molecular weight = 337.01amu Principal moments of inertia in cm(-1) A = 0.022081 B = 0.002739 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.736478 B =10219.956818 C =10789.854022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.963 3.037 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.533 4.533 8 H 0.054 0.946 9 C 0.047 3.953 10 C -0.002 4.002 11 C -0.157 4.157 12 C -0.018 4.018 13 C -0.699 4.699 14 S 2.730 3.270 15 O -0.974 6.974 16 O -0.985 6.985 17 N -1.108 6.108 18 C 0.094 3.906 19 C 0.063 3.937 20 Cl -0.147 7.147 21 Cl -0.146 7.146 22 C -0.017 4.017 23 C -0.153 4.153 24 H 0.267 0.733 25 H 0.015 0.985 26 H 0.011 0.989 27 H 0.126 0.874 28 H 0.152 0.848 29 H 0.426 0.574 30 H 0.118 0.882 31 H 0.126 0.874 32 H 0.185 0.815 33 H 0.164 0.836 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.192 -23.372 -3.512 24.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.788 3.212 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.202 1.202 7 C -0.570 4.570 8 H 0.072 0.928 9 C 0.010 3.990 10 C -0.003 4.003 11 C -0.175 4.175 12 C -0.038 4.038 13 C -0.787 4.787 14 S 2.820 3.180 15 O -0.964 6.964 16 O -0.975 6.975 17 N -0.872 5.872 18 C -0.032 4.032 19 C -0.008 4.008 20 Cl -0.121 7.121 21 Cl -0.120 7.120 22 C -0.036 4.036 23 C -0.172 4.172 24 H 0.076 0.924 25 H 0.034 0.966 26 H 0.030 0.970 27 H 0.144 0.856 28 H 0.169 0.831 29 H 0.264 0.736 30 H 0.135 0.865 31 H 0.144 0.856 32 H 0.202 0.798 33 H 0.181 0.819 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.981 -23.190 -3.561 24.212 hybrid contribution -0.715 1.271 0.641 1.593 sum 5.265 -21.919 -2.920 22.731 Atomic orbital electron populations 1.70056 1.07504 1.28057 1.50847 1.25847 0.95747 1.02921 0.94408 0.85424 0.78865 0.78906 0.78043 1.19189 1.20010 1.20202 1.21325 0.93064 0.91063 1.51587 0.92817 1.18270 0.93033 0.90768 0.96884 1.20816 0.93209 0.92206 0.94042 1.21281 0.99954 0.98115 0.98200 1.20995 0.92018 0.93423 0.97314 1.30717 1.24289 1.24138 0.99530 1.00659 0.72623 0.72255 0.72445 1.93550 1.71075 1.86721 1.45047 1.93548 1.72182 1.86791 1.44991 1.55305 1.64455 1.38908 1.28521 1.22245 0.97762 0.92803 0.90382 1.27627 0.87824 0.92807 0.92557 1.98807 1.42924 1.72029 1.98353 1.98811 1.75477 1.96609 1.41068 1.21086 0.91859 0.93435 0.97175 1.21320 0.99742 0.98034 0.98073 0.92400 0.96639 0.97048 0.85625 0.83057 0.73603 0.86466 0.85582 0.79751 0.81873 0.84993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.55 13.29 21.45 0.28 -53.27 16 2 C 0.01 0.54 5.46 84.65 0.46 1.00 16 3 Si 0.96 43.12 29.54 68.60 2.03 45.15 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.53 -29.17 9.09 25.60 0.23 -28.93 16 8 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 9 C 0.05 2.37 5.10 29.10 0.15 2.51 16 10 C 0.00 -0.10 5.07 -19.87 -0.10 -0.20 16 11 C -0.16 -5.64 9.70 22.27 0.22 -5.42 16 12 C -0.02 -0.54 9.52 22.27 0.21 -0.33 16 13 C -0.70 -18.72 5.95 22.27 0.13 -18.59 16 14 S 2.73 62.67 5.74 -56.49 -0.32 62.35 16 15 O -0.97 -25.80 16.75 -128.00 -2.14 -27.94 16 16 O -0.98 -28.46 17.28 -128.00 -2.21 -30.67 16 17 N -1.11 -16.96 5.52 -187.49 -1.03 -17.99 16 18 C 0.09 0.94 5.98 86.38 0.52 1.45 16 19 C 0.06 0.52 4.13 71.98 0.30 0.82 16 20 Cl -0.15 -1.91 28.36 -2.72 -0.08 -1.99 16 21 Cl -0.15 -1.86 27.85 -2.72 -0.08 -1.93 16 22 C -0.02 -0.45 9.52 22.27 0.21 -0.24 16 23 C -0.15 -5.22 9.70 22.27 0.22 -5.01 16 24 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 25 H 0.02 0.81 8.09 -2.39 -0.02 0.79 16 26 H 0.01 0.60 8.09 -2.38 -0.02 0.58 16 27 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 28 H 0.15 3.80 7.62 -2.91 -0.02 3.78 16 29 H 0.43 5.95 7.88 -96.74 -0.76 5.19 16 30 H 0.12 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.13 0.97 7.75 -2.39 -0.02 0.95 16 32 H 0.19 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.16 3.33 7.61 -2.91 -0.02 3.31 16 34 H 0.13 4.32 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -71.14 340.35 -0.63 -71.77 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 0.38 Total: 7.47 kcal Atomic # 6 Polarization: -55.48 SS G_CDS: 2.54 Total: -52.93 kcal Atomic # 7 Polarization: -70.51 SS G_CDS: -0.75 Total: -71.26 kcal Atomic # 8 Polarization: -54.26 SS G_CDS: -4.36 Total: -58.61 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: 62.67 SS G_CDS: -0.32 Total: 62.35 kcal Atomic # 17 Polarization: -3.77 SS G_CDS: -0.15 Total: -3.92 kcal Total: -71.14 -0.63 -71.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885275364.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.691 kcal (2) G-P(sol) polarization free energy of solvation -71.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds