Wall clock time and date at job start Sat Apr 11 2020 04:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46842 * 110.99632 * 2 1 4 4 C 1.53181 * 109.45458 * 172.30502 * 3 2 1 5 5 C 1.52913 * 108.99284 * 57.08739 * 4 3 2 6 6 C 1.53140 * 113.52886 * 175.28544 * 5 4 3 7 7 C 1.53852 * 83.15422 * 218.97599 * 6 5 4 8 8 N 1.46715 * 113.48130 * 76.35667 * 5 4 3 9 9 C 1.34780 * 136.10359 * 321.91377 * 8 5 4 10 10 O 1.21593 * 119.99567 * 5.53540 * 9 8 5 11 11 N 1.34768 * 120.00117 * 185.53410 * 9 8 5 12 12 C 1.46498 * 120.00316 * 180.02562 * 11 9 8 13 13 C 1.53035 * 109.46219 * 154.99747 * 12 11 9 14 14 C 1.53199 * 109.31500 * 181.38161 * 13 12 11 15 15 N 1.46924 * 108.89075 * 305.29812 * 14 13 12 16 16 C 1.36941 * 120.62735 * 233.66638 * 15 14 13 17 17 H 1.07992 * 119.99867 * 26.23689 * 16 15 14 18 18 C 1.38810 * 119.99874 * 206.23313 * 16 15 14 19 19 N 1.31616 * 120.00204 * 15.94140 * 18 16 15 20 20 Si 1.86799 * 119.99916 * 195.94004 * 18 16 15 21 21 H 1.48506 * 109.47041 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47297 * 120.00355 * 20 18 16 23 23 H 1.48504 * 109.47089 * 240.00138 * 20 18 16 24 24 C 1.47207 * 118.55649 * 53.53844 * 15 14 13 25 25 C 1.53037 * 109.45832 * 275.06644 * 12 11 9 26 26 C 1.52924 * 112.42564 * 305.86539 * 5 4 3 27 27 C 1.46820 * 111.00102 * 235.49055 * 2 1 3 28 28 H 1.09001 * 109.47293 * 59.99964 * 1 2 3 29 29 H 1.09001 * 109.47262 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47792 * 299.99683 * 1 2 3 31 31 H 1.09002 * 109.47115 * 52.30797 * 3 2 1 32 32 H 1.09003 * 109.47474 * 292.30147 * 3 2 1 33 33 H 1.09000 * 109.55323 * 297.23058 * 4 3 2 34 34 H 1.09004 * 109.55082 * 176.93944 * 4 3 2 35 35 H 1.09008 * 114.22436 * 332.73334 * 6 5 4 36 36 H 1.09003 * 114.22576 * 105.41006 * 6 5 4 37 37 H 1.09003 * 113.45267 * 271.22658 * 7 6 5 38 38 H 1.09000 * 113.55821 * 140.73814 * 7 6 5 39 39 H 0.97000 * 119.99847 * 359.97438 * 11 9 8 40 40 H 1.08995 * 109.44752 * 35.03148 * 12 11 9 41 41 H 1.09003 * 109.49858 * 61.43647 * 13 12 11 42 42 H 1.08995 * 109.50130 * 301.33725 * 13 12 11 43 43 H 1.09006 * 109.57963 * 65.15301 * 14 13 12 44 44 H 1.08999 * 109.58800 * 185.43486 * 14 13 12 45 45 H 0.97003 * 119.99979 * 179.97438 * 19 18 16 46 46 H 1.09001 * 109.53353 * 186.66934 * 24 15 14 47 47 H 1.08997 * 109.67729 * 66.37013 * 24 15 14 48 48 H 1.08998 * 109.50138 * 298.56274 * 25 12 11 49 49 H 1.09000 * 109.49681 * 58.63005 * 25 12 11 50 50 H 1.09000 * 109.55249 * 173.97033 * 26 5 4 51 51 H 1.08998 * 109.55203 * 294.26812 * 26 5 4 52 52 H 1.09008 * 109.46926 * 307.68057 * 27 2 1 53 53 H 1.08993 * 109.47944 * 67.68211 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9951 1.3709 0.0000 4 6 3.5142 1.3344 0.1934 5 6 4.1362 0.4797 -0.9116 6 6 5.6673 0.4657 -0.8850 7 6 5.5109 0.5128 -2.4148 8 7 4.2069 1.1621 -2.2085 9 6 3.4212 2.0066 -2.9058 10 8 2.4049 2.4460 -2.4034 11 7 3.7621 2.3639 -4.1597 12 6 2.9085 3.2822 -4.9174 13 6 3.7475 4.0028 -5.9751 14 6 2.8590 4.9872 -6.7424 15 7 1.7028 4.2610 -7.2851 16 6 1.4004 4.3280 -8.6190 17 1 2.1786 4.5314 -9.3395 18 6 0.0935 4.1343 -9.0449 19 7 -0.8969 4.1993 -8.1805 20 14 -0.2596 3.7814 -10.8450 21 1 1.0161 3.7614 -11.6050 22 1 -0.9308 2.4625 -10.9685 23 1 -1.1449 4.8405 -11.3926 24 6 0.8802 3.4591 -6.3646 25 6 1.7909 2.4919 -5.6018 26 6 3.5144 -0.9152 -0.9900 27 6 1.9952 -0.7765 -1.1295 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3635 0.5138 0.8900 31 1 1.5387 1.9353 0.8132 32 1 1.7613 1.8499 -0.9508 33 1 3.7479 0.9002 1.1655 34 1 3.9133 2.3473 0.1394 35 1 6.1153 1.3591 -0.4498 36 1 6.0995 -0.4610 -0.5073 37 1 5.4368 -0.4731 -2.8739 38 1 6.2417 1.1538 -2.9079 39 1 4.5731 2.0136 -4.5603 40 1 2.4719 4.0151 -4.2390 41 1 4.1641 3.2724 -6.6687 42 1 4.5573 4.5466 -5.4888 43 1 2.5144 5.7708 -6.0674 44 1 3.4273 5.4323 -7.5591 45 1 -1.8101 4.0643 -8.4782 46 1 0.1420 2.8940 -6.9338 47 1 0.3723 4.1164 -5.6589 48 1 2.2259 1.7757 -6.2988 49 1 1.2084 1.9598 -4.8497 50 1 3.9133 -1.4443 -1.8555 51 1 3.7482 -1.4704 -0.0817 52 1 1.5389 -1.7665 -1.1337 53 1 1.7611 -0.2647 -2.0629 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892878906.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:53:46 Heat of formation + Delta-G solvation = 25.114423 kcal Electronic energy + Delta-G solvation = -31358.906672 eV Core-core repulsion = 27459.782260 eV Total energy + Delta-G solvation = -3899.124413 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.227 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.23970 -40.25443 -38.71948 -38.20976 -35.96562 -34.01874 -32.72057 -31.92731 -31.78564 -31.32072 -29.95537 -27.02935 -26.86220 -24.65892 -24.07500 -23.93873 -23.82297 -22.48481 -21.67084 -21.14320 -19.73298 -18.75459 -18.28648 -17.47147 -16.90585 -16.82801 -16.35965 -16.15988 -15.95932 -15.63639 -15.39119 -15.36833 -15.32521 -15.03054 -14.80260 -14.30830 -14.19009 -14.08645 -13.54893 -13.44622 -13.41190 -13.23914 -13.05841 -13.02113 -12.69155 -12.60188 -12.54571 -12.38153 -12.28606 -12.14041 -12.03884 -11.94829 -11.85993 -11.65656 -11.56873 -11.37555 -11.05309 -10.68202 -10.62293 -10.11849 -9.43717 -9.16348 -8.76602 -7.88812 -5.35076 1.45114 1.46782 1.49911 1.57959 2.21778 2.49626 2.91940 3.04498 3.27305 3.42257 3.62092 3.76390 3.82599 3.85055 4.00717 4.06228 4.20169 4.29504 4.30270 4.36401 4.43048 4.48873 4.51610 4.55785 4.57845 4.62255 4.65328 4.71817 4.75561 4.80719 4.83887 4.89166 4.96065 4.97996 5.01679 5.03890 5.05445 5.08958 5.13949 5.27042 5.28435 5.33004 5.39868 5.44294 5.60721 5.67240 5.78663 6.06454 6.13218 6.35012 6.36785 7.09881 7.13632 7.73852 7.81048 8.33796 9.18201 Molecular weight = 336.23amu Principal moments of inertia in cm(-1) A = 0.016770 B = 0.002929 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.251883 B = 9555.743752 C =10405.792223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.538 5.538 3 C 0.007 3.993 4 C -0.099 4.099 5 C 0.167 3.833 6 C -0.122 4.122 7 C 0.095 3.905 8 N -0.664 5.664 9 C 0.723 3.277 10 O -0.619 6.619 11 N -0.726 5.726 12 C 0.185 3.815 13 C -0.119 4.119 14 C 0.142 3.858 15 N -0.610 5.610 16 C -0.259 4.259 17 H 0.077 0.923 18 C -0.057 4.057 19 N -0.941 5.941 20 Si 0.971 3.029 21 H -0.261 1.261 22 H -0.293 1.293 23 H -0.293 1.293 24 C 0.182 3.818 25 C -0.125 4.125 26 C -0.105 4.105 27 C 0.056 3.944 28 H -0.001 1.001 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.056 0.944 35 H 0.098 0.902 36 H 0.122 0.878 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.405 0.595 40 H 0.052 0.948 41 H 0.074 0.926 42 H 0.090 0.910 43 H 0.011 0.989 44 H 0.070 0.930 45 H 0.248 0.752 46 H 0.059 0.941 47 H -0.014 1.014 48 H 0.057 0.943 49 H 0.036 0.964 50 H 0.087 0.913 51 H 0.108 0.892 52 H 0.083 0.917 53 H -0.005 1.005 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.908 -12.743 17.103 27.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.262 5.262 3 C -0.120 4.120 4 C -0.137 4.137 5 C 0.082 3.918 6 C -0.160 4.160 7 C -0.027 4.027 8 N -0.403 5.403 9 C 0.427 3.573 10 O -0.501 6.501 11 N -0.380 5.380 12 C 0.079 3.921 13 C -0.159 4.159 14 C 0.016 3.984 15 N -0.334 5.334 16 C -0.389 4.389 17 H 0.094 0.906 18 C -0.252 4.252 19 N -0.587 5.587 20 Si 0.799 3.201 21 H -0.185 1.185 22 H -0.219 1.219 23 H -0.221 1.221 24 C 0.055 3.945 25 C -0.165 4.165 26 C -0.143 4.143 27 C -0.072 4.072 28 H 0.017 0.983 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.111 0.889 34 H 0.075 0.925 35 H 0.117 0.883 36 H 0.141 0.859 37 H 0.117 0.883 38 H 0.108 0.892 39 H 0.241 0.759 40 H 0.071 0.929 41 H 0.092 0.908 42 H 0.108 0.892 43 H 0.029 0.971 44 H 0.088 0.912 45 H 0.058 0.942 46 H 0.078 0.922 47 H 0.004 0.996 48 H 0.075 0.925 49 H 0.055 0.945 50 H 0.106 0.894 51 H 0.126 0.874 52 H 0.101 0.899 53 H 0.013 0.987 Dipole moment (debyes) X Y Z Total from point charges 17.066 -12.478 17.703 27.575 hybrid contribution -1.454 0.543 -1.895 2.450 sum 15.612 -11.935 15.808 25.221 Atomic orbital electron populations 1.22337 0.87712 1.02276 0.99841 1.62021 1.07437 1.14135 1.42655 1.22928 0.96308 0.89399 1.03412 1.21590 0.93888 0.99280 0.98991 1.21973 0.96694 0.91548 0.81550 1.23441 0.92056 1.05428 0.95078 1.23284 0.82809 0.98398 0.98170 1.49068 1.22884 1.46453 1.21911 1.15620 0.81641 0.79441 0.80592 1.90606 1.28621 1.61079 1.69801 1.45109 1.28505 1.51213 1.13155 1.20451 0.90195 0.89908 0.91528 1.22125 0.97860 0.99192 0.96716 1.21037 0.88435 0.92691 0.96241 1.44429 1.30625 1.53373 1.04939 1.19652 0.92297 1.43227 0.83685 0.90558 1.25865 0.95524 1.02097 1.01721 1.70209 0.98622 1.54683 1.35222 0.85146 0.78045 0.76807 0.80093 1.18472 1.21945 1.22062 1.20537 0.92165 0.91412 0.90345 1.22263 0.97731 0.98607 0.97918 1.21817 0.92901 0.95063 1.04549 1.22052 0.97132 0.97624 0.90396 0.98251 0.90044 0.90856 0.92814 0.90682 0.88889 0.92525 0.88315 0.85945 0.88337 0.89234 0.75901 0.92946 0.90762 0.89160 0.97095 0.91195 0.94242 0.92242 0.99582 0.92456 0.94549 0.89444 0.87397 0.89898 0.98710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 9.58 127.69 1.22 1.89 16 2 N -0.54 -13.62 4.87 -922.06 -4.49 -18.11 16 3 C 0.01 0.19 5.32 86.37 0.46 0.65 16 4 C -0.10 -2.12 5.25 30.63 0.16 -1.96 16 5 C 0.17 2.90 0.93 -0.09 0.00 2.90 16 6 C -0.12 -1.07 7.63 30.93 0.24 -0.83 16 7 C 0.10 1.05 7.95 82.90 0.66 1.71 16 8 N -0.66 -14.33 3.37 -832.56 -2.80 -17.13 16 9 C 0.72 22.55 8.68 179.06 1.55 24.11 16 10 O -0.62 -24.98 12.53 -4.01 -0.05 -25.03 16 11 N -0.73 -20.74 5.08 -457.71 -2.33 -23.06 16 12 C 0.18 6.61 2.42 45.02 0.11 6.72 16 13 C -0.12 -3.80 5.55 30.67 0.17 -3.63 16 14 C 0.14 5.82 6.51 86.37 0.56 6.39 16 15 N -0.61 -31.41 3.01 -698.38 -2.11 -33.52 16 16 C -0.26 -14.32 9.62 84.03 0.81 -13.52 16 17 H 0.08 4.01 7.87 -2.91 -0.02 3.99 16 18 C -0.06 -3.28 4.97 84.86 0.42 -2.85 16 19 N -0.94 -57.77 11.00 21.65 0.24 -57.53 16 20 Si 0.97 45.43 29.58 68.60 2.03 47.46 16 21 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 22 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 23 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 24 C 0.18 9.55 5.34 86.31 0.46 10.01 16 25 C -0.12 -5.31 5.65 30.67 0.17 -5.14 16 26 C -0.10 -1.65 5.39 30.63 0.17 -1.48 16 27 C 0.06 1.32 5.48 86.38 0.47 1.79 16 28 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 29 H 0.08 1.67 8.07 -2.39 -0.02 1.65 16 30 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.05 1.52 8.10 -2.39 -0.02 1.50 16 32 H 0.08 2.81 3.84 -36.73 -0.14 2.67 16 33 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 35 H 0.10 0.87 8.12 -2.38 -0.02 0.85 16 36 H 0.12 0.36 8.10 -2.39 -0.02 0.34 16 37 H 0.10 0.79 7.29 -2.39 -0.02 0.77 16 38 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.41 8.81 8.33 -92.71 -0.77 8.04 16 40 H 0.05 2.20 7.58 -2.39 -0.02 2.19 16 41 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 44 H 0.07 2.68 7.93 -2.39 -0.02 2.66 16 45 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 46 H 0.06 3.51 5.89 -2.39 -0.01 3.50 16 47 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 48 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 49 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 50 H 0.09 1.12 7.03 -2.39 -0.02 1.10 16 51 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 52 H 0.08 1.69 8.05 -2.38 -0.02 1.67 16 53 H -0.01 -0.18 8.14 -2.39 -0.02 -0.20 16 Total: -1.00 -75.71 397.40 -1.89 -77.60 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: -0.02 Total: 22.60 kcal Atomic # 6 Polarization: 19.09 SS G_CDS: 7.64 Total: 26.73 kcal Atomic # 7 Polarization: -137.87 SS G_CDS: -11.49 Total: -149.36 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.05 Total: -25.03 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -75.71 -1.89 -77.60 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892878906.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.714 kcal (2) G-P(sol) polarization free energy of solvation -75.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds