Wall clock time and date at job start Sat Apr 11 2020 04:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 119.99716 * 2 1 4 4 H 1.48497 * 109.47211 * 269.99734 * 3 2 1 5 5 H 1.48508 * 109.47268 * 29.99769 * 3 2 1 6 6 H 1.48498 * 109.47214 * 149.99636 * 3 2 1 7 7 C 1.37873 * 120.00007 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00223 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47151 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.47280 * 179.97438 * 10 9 7 12 12 C 1.34777 * 120.00004 * 180.27334 * 11 10 9 13 13 O 1.21718 * 120.00000 * 359.72880 * 12 11 10 14 14 C 1.46577 * 119.99675 * 179.72580 * 12 11 10 15 15 C 1.40540 * 126.58126 * 316.65960 * 14 12 11 16 16 N 1.30746 * 108.74270 * 179.87938 * 15 14 12 17 17 N 1.40014 * 109.59931 * 0.38889 * 16 15 14 18 18 C 1.36266 * 132.00855 * 179.77078 * 17 16 15 19 19 C 1.35182 * 120.72432 * 179.97438 * 18 17 16 20 20 C 1.40148 * 120.32975 * 0.05183 * 19 18 17 21 21 C 1.36524 * 119.39998 * 359.96646 * 20 19 18 22 22 Br 1.89102 * 120.37987 * 180.02562 * 21 20 19 23 23 C 1.36559 * 107.90890 * 359.76014 * 17 16 15 24 24 H 0.96995 * 120.00088 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47305 * 59.99421 * 9 7 2 26 26 H 1.09004 * 109.46635 * 299.99712 * 9 7 2 27 27 H 1.09000 * 109.47170 * 59.99729 * 10 9 7 28 28 H 1.09004 * 109.47009 * 299.99940 * 10 9 7 29 29 H 0.96998 * 119.99726 * 0.02562 * 11 10 9 30 30 H 1.08005 * 125.62726 * 0.02562 * 15 14 12 31 31 H 1.08003 * 119.63691 * 359.97438 * 18 17 16 32 32 H 1.08006 * 119.83177 * 180.02562 * 19 18 17 33 33 H 1.08007 * 120.29846 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 2.1869 -6.0979 0.0068 13 8 3.4040 -6.0979 0.0065 14 6 1.4540 -7.3673 0.0135 15 6 0.3246 -7.6783 0.7901 16 7 -0.0470 -8.9023 0.5196 17 7 0.8168 -9.4558 -0.4332 18 6 0.8538 -10.6813 -1.0278 19 6 1.8087 -10.9792 -1.9371 20 6 2.7789 -10.0284 -2.2820 21 6 2.7507 -8.7977 -1.6916 22 35 4.0457 -7.4936 -2.1368 23 6 1.7502 -8.5116 -0.7525 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8904 27 1 2.8720 -3.6042 0.8905 28 1 2.8720 -3.6042 -0.8895 29 1 0.5429 -4.9308 0.0011 30 1 -0.1581 -7.0149 1.4924 31 1 0.1122 -11.4228 -0.7698 32 1 1.8243 -11.9550 -2.3999 33 1 3.5413 -10.2668 -3.0089 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935338621.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:54:30 Heat of formation + Delta-G solvation = 53.661802 kcal Electronic energy + Delta-G solvation = -19986.146071 eV Core-core repulsion = 16673.490004 eV Total energy + Delta-G solvation = -3312.656067 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 337.017 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.27749 -40.20396 -38.37221 -36.45429 -34.73321 -34.61254 -32.23131 -31.76379 -31.09084 -29.49783 -26.80209 -24.75370 -24.47938 -23.39890 -22.68192 -21.18482 -19.06814 -18.45118 -17.92837 -17.53832 -17.06750 -16.76419 -16.46058 -16.30376 -16.13232 -15.61762 -14.76183 -14.69010 -14.36287 -14.22607 -13.52614 -13.40912 -13.18138 -13.13665 -12.92285 -12.53849 -12.40211 -12.24880 -12.07196 -11.62816 -11.43503 -11.14701 -10.86107 -10.59881 -10.59137 -10.44475 -9.70354 -8.78347 -8.21964 -6.32158 -0.59893 -0.16517 0.46527 1.13526 1.16587 1.42293 1.42939 1.54510 1.98542 2.19059 2.39426 2.59125 3.12573 3.20230 3.28112 3.67995 3.73917 4.07800 4.15665 4.33074 4.46137 4.57008 4.64617 4.71026 4.87572 4.91684 5.11471 5.21476 5.37706 5.57286 5.63052 5.63525 5.83277 6.19713 6.26106 6.77496 6.81711 7.36845 7.44135 8.89982 Molecular weight = 337.02amu Principal moments of inertia in cm(-1) A = 0.019957 B = 0.003313 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.698114 B = 8448.372393 C = 9568.775105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.964 3.036 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.058 0.942 9 C 0.024 3.976 10 C 0.148 3.852 11 N -0.715 5.715 12 C 0.581 3.419 13 O -0.556 6.556 14 C -0.328 4.328 15 C 0.126 3.874 16 N -0.328 5.328 17 N -0.269 5.269 18 C 0.119 3.881 19 C -0.142 4.142 20 C -0.016 4.016 21 C -0.136 4.136 22 Br -0.013 7.013 23 C 0.149 3.851 24 H 0.265 0.735 25 H 0.005 0.995 26 H 0.009 0.991 27 H 0.046 0.954 28 H 0.043 0.957 29 H 0.405 0.595 30 H 0.223 0.777 31 H 0.215 0.785 32 H 0.221 0.779 33 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.311 -28.128 -6.168 28.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.192 4.192 3 Si 0.789 3.211 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.014 4.014 10 C 0.025 3.975 11 N -0.366 5.366 12 C 0.368 3.632 13 O -0.435 6.435 14 C -0.342 4.342 15 C -0.053 4.053 16 N -0.149 5.149 17 N -0.033 5.033 18 C -0.007 4.007 19 C -0.163 4.163 20 C -0.042 4.042 21 C -0.218 4.218 22 Br 0.073 6.927 23 C 0.027 3.973 24 H 0.074 0.926 25 H 0.023 0.977 26 H 0.028 0.972 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.240 0.760 30 H 0.240 0.760 31 H 0.232 0.768 32 H 0.238 0.762 33 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 2.566 -28.361 -5.952 29.092 hybrid contribution 0.070 1.731 0.103 1.736 sum 2.636 -26.630 -5.849 27.392 Atomic orbital electron populations 1.70065 1.07533 1.27926 1.51133 1.25868 0.95790 1.03057 0.94477 0.85456 0.78659 0.78508 0.78494 1.19810 1.20477 1.19040 1.21473 0.93562 0.91950 1.51348 0.92347 1.19124 0.94243 0.91806 0.96216 1.21139 0.94831 0.81939 0.99613 1.45939 1.10566 1.05193 1.74858 1.17159 0.86632 0.82918 0.76475 1.90842 1.14272 1.87960 1.50456 1.19749 1.06208 0.96110 1.12170 1.24432 0.91703 0.93046 0.96156 1.77529 1.15381 1.11977 1.10018 1.46383 1.18892 1.10695 1.27351 1.22728 1.01179 0.83978 0.92774 1.21587 0.93260 1.02995 0.98489 1.21945 0.98090 0.88860 0.95267 1.21322 0.98470 0.98383 1.03611 1.96905 1.50765 1.53790 1.91285 1.18965 0.91742 0.90113 0.96530 0.92589 0.97662 0.97226 0.93527 0.93890 0.76041 0.76027 0.76812 0.76248 0.79992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.28 13.29 21.45 0.28 -54.99 16 2 C 0.01 0.38 5.46 84.65 0.46 0.84 16 3 Si 0.96 44.41 29.54 68.60 2.03 46.44 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.54 -31.15 9.11 25.60 0.23 -30.92 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16 9 C 0.02 1.23 5.09 29.85 0.15 1.38 16 10 C 0.15 6.69 5.61 86.38 0.48 7.17 16 11 N -0.71 -27.11 5.55 -467.16 -2.59 -29.70 16 12 C 0.58 21.87 7.03 86.42 0.61 22.48 16 13 O -0.56 -23.87 13.63 -4.41 -0.06 -23.93 16 14 C -0.33 -10.34 5.93 -19.90 -0.12 -10.45 16 15 C 0.13 3.29 11.88 85.42 1.01 4.31 16 16 N -0.33 -8.24 12.58 -56.62 -0.71 -8.95 16 17 N -0.27 -5.97 3.86 -187.22 -0.72 -6.69 16 18 C 0.12 1.32 11.17 83.30 0.93 2.25 16 19 C -0.14 -0.89 9.98 22.03 0.22 -0.67 16 20 C -0.02 -0.21 9.83 22.33 0.22 0.01 16 21 C -0.14 -3.26 6.23 22.34 0.14 -3.12 16 22 Br -0.01 -0.39 29.65 -20.37 -0.60 -0.99 16 23 C 0.15 4.12 6.73 39.52 0.27 4.39 16 24 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 25 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 26 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.40 13.60 8.40 -92.71 -0.78 12.82 16 30 H 0.22 4.44 8.06 -2.91 -0.02 4.41 16 31 H 0.22 0.64 8.06 -2.91 -0.02 0.62 16 32 H 0.22 -0.95 8.06 -2.91 -0.02 -0.98 16 33 H 0.18 1.23 8.06 -2.91 -0.02 1.21 16 Total: -1.00 -77.88 312.70 2.61 -75.27 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: 0.38 Total: 5.89 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: 4.61 Total: -2.34 kcal Atomic # 7 Polarization: -96.60 SS G_CDS: -3.74 Total: -100.34 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -0.06 Total: -23.93 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 35 Polarization: -0.39 SS G_CDS: -0.60 Total: -0.99 kcal Total: -77.88 2.61 -75.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935338621.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.927 kcal (2) G-P(sol) polarization free energy of solvation -77.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds