Wall clock time and date at job start Sat Apr 11 2020 04:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46906 * 110.99678 * 2 1 4 4 C 1.46901 * 110.99912 * 123.94832 * 2 1 3 5 5 C 1.50702 * 112.85138 * 305.56174 * 4 2 1 6 6 O 1.21279 * 119.99912 * 264.28965 * 5 4 2 7 7 N 1.34775 * 120.00066 * 84.28391 * 5 4 2 8 8 C 1.47086 * 120.87864 * 174.67496 * 7 5 4 9 9 C 1.53237 * 108.51794 * 231.20821 * 8 7 5 10 10 N 1.46900 * 109.34244 * 306.16912 * 9 8 7 11 11 C 1.46898 * 111.00112 * 187.25490 * 10 9 8 12 12 C 1.53502 * 114.20768 * 180.02562 * 11 10 9 13 13 N 1.47068 * 88.04757 * 220.37498 * 12 11 10 14 14 C 1.36939 * 136.05717 * 207.05681 * 13 12 11 15 15 H 1.07994 * 119.99685 * 359.97438 * 14 13 12 16 16 C 1.38811 * 120.00001 * 179.97438 * 14 13 12 17 17 N 1.31624 * 119.99971 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00035 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47045 * 59.99908 * 18 16 14 20 20 H 1.48498 * 109.47373 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47290 * 300.00376 * 18 16 14 22 22 C 1.47066 * 87.88654 * 27.08975 * 13 12 11 23 23 C 1.46906 * 111.26577 * 63.10887 * 10 9 8 24 24 C 1.47073 * 120.88303 * 354.70158 * 7 5 4 25 25 C 1.53783 * 113.68906 * 76.82787 * 4 2 1 26 26 C 1.53780 * 87.08158 * 89.12757 * 25 4 2 27 27 C 1.53777 * 113.61586 * 174.36074 * 4 2 1 28 28 H 1.08999 * 109.47632 * 288.73197 * 1 2 3 29 29 H 1.08999 * 109.47051 * 48.73760 * 1 2 3 30 30 H 1.09003 * 109.46954 * 168.73344 * 1 2 3 31 31 H 1.08998 * 109.46479 * 183.94941 * 3 2 1 32 32 H 1.09000 * 109.47209 * 303.95071 * 3 2 1 33 33 H 1.08998 * 109.46863 * 63.95331 * 3 2 1 34 34 H 1.08991 * 109.62717 * 111.50017 * 8 7 5 35 35 H 1.08996 * 109.62729 * 350.91571 * 8 7 5 36 36 H 1.09004 * 109.49197 * 186.21460 * 9 8 7 37 37 H 1.09003 * 109.49735 * 66.13559 * 9 8 7 38 38 H 1.09008 * 113.41261 * 313.20206 * 11 10 9 39 39 H 1.08994 * 113.46616 * 105.56718 * 12 11 10 40 40 H 1.08994 * 113.46406 * 335.18216 * 12 11 10 41 41 H 0.97001 * 119.99936 * 179.97438 * 17 16 14 42 42 H 1.08997 * 113.47211 * 87.65775 * 22 13 12 43 43 H 1.09003 * 113.46819 * 218.04143 * 22 13 12 44 44 H 1.09000 * 109.49551 * 56.85651 * 23 10 9 45 45 H 1.08997 * 109.48885 * 176.93616 * 23 10 9 46 46 H 1.09005 * 109.62925 * 248.50038 * 24 7 5 47 47 H 1.09001 * 109.62986 * 8.88233 * 24 7 5 48 48 H 1.08998 * 113.61518 * 203.67622 * 25 4 2 49 49 H 1.09001 * 113.61114 * 334.57718 * 25 4 2 50 50 H 1.09002 * 113.61165 * 270.88585 * 26 25 4 51 51 H 1.08992 * 113.61574 * 139.98109 * 26 25 4 52 52 H 1.09005 * 113.61429 * 25.35074 * 27 4 2 53 53 H 1.08996 * 113.61584 * 156.16553 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.4511 -0.2955 2.4619 6 8 2.0824 0.4953 3.1306 7 7 0.2628 -0.7534 2.9031 8 6 -0.2329 -0.3991 4.2418 9 6 -0.6365 -1.6868 4.9678 10 7 -1.5833 -2.4392 4.1340 11 6 -2.1267 -3.5924 4.8640 12 6 -3.1268 -4.4331 4.0582 13 7 -3.9346 -4.5529 5.2813 14 6 -4.8282 -5.4585 5.7880 15 1 -5.0738 -6.3472 5.2257 16 6 -5.4183 -5.2340 7.0242 17 7 -5.1185 -4.1511 7.7097 18 14 -6.6378 -6.4689 7.7150 19 1 -5.9732 -7.7880 7.8689 20 1 -7.1200 -6.0008 9.0392 21 1 -7.7892 -6.6002 6.7864 22 6 -3.3610 -3.2719 5.7205 23 6 -0.9626 -2.8607 2.8709 24 6 -0.5724 -1.6211 2.0589 25 6 1.9172 -2.2897 0.9458 26 6 3.3075 -2.2000 0.2946 27 6 3.5252 -0.9213 1.1206 28 1 -0.3634 0.3300 0.9732 29 1 -0.3633 0.6777 -0.7725 30 1 -0.3633 -1.0079 -0.2008 31 1 3.0827 1.3432 -0.0708 32 1 1.5897 1.9164 -0.8525 33 1 1.7043 1.8724 0.9233 34 1 -1.0989 0.2562 4.1499 35 1 0.5541 0.1057 4.8018 36 1 -1.1084 -1.4360 5.9179 37 1 0.2498 -2.2944 5.1507 38 1 -1.3645 -4.1772 5.3791 39 1 -2.7172 -5.3826 3.7138 40 1 -3.6221 -3.8749 3.2639 41 1 -5.5311 -3.9941 8.5734 42 1 -3.9183 -2.4036 5.3691 43 1 -3.1515 -3.2338 6.7895 44 1 -0.0718 -3.4520 3.0829 45 1 -1.6710 -3.4612 2.3003 46 1 -1.4712 -1.0832 1.7572 47 1 -0.0110 -1.9213 1.1741 48 1 1.9088 -2.8478 1.8821 49 1 1.1322 -2.6034 0.2578 50 1 3.2754 -2.0250 -0.7808 51 1 3.9730 -3.0175 0.5718 52 1 4.0384 -0.1303 0.5737 53 1 3.9566 -1.1038 2.1048 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941436693.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:54:42 Heat of formation + Delta-G solvation = 76.165652 kcal Electronic energy + Delta-G solvation = -31378.433305 eV Core-core repulsion = 27481.522639 eV Total energy + Delta-G solvation = -3896.910665 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.227 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.44769 -40.54574 -39.15003 -38.18519 -36.06923 -35.26208 -33.91318 -32.46820 -29.95863 -29.01029 -28.42624 -26.94273 -26.56237 -26.27444 -24.82372 -24.48208 -23.69530 -22.47509 -20.90487 -20.78899 -19.28340 -18.79314 -18.60399 -17.50245 -17.07183 -16.91814 -16.61797 -16.43449 -16.08284 -15.84326 -15.77092 -15.58412 -15.13964 -14.81638 -14.71236 -14.42352 -14.20431 -13.87331 -13.66663 -13.45592 -13.34860 -13.21604 -13.08201 -12.94409 -12.84569 -12.66313 -12.64624 -12.55259 -12.30842 -12.23606 -12.18107 -12.08964 -11.81774 -11.72514 -11.59791 -11.16257 -11.01385 -10.91279 -10.84775 -9.88533 -9.38859 -9.27840 -8.93734 -7.91453 -5.25773 1.41370 1.45598 1.49511 1.55622 1.85522 2.44775 2.75092 2.83159 3.26169 3.30366 3.42593 3.52361 3.60891 3.67373 3.87252 3.89157 4.00054 4.11257 4.17128 4.18036 4.31439 4.33200 4.36179 4.40561 4.53697 4.57524 4.62347 4.68771 4.69637 4.73445 4.77229 4.79003 4.84281 4.86366 4.88595 4.95935 5.01431 5.05380 5.07461 5.13091 5.20521 5.25650 5.34812 5.36527 5.40951 5.49849 5.82683 5.89675 5.90894 6.10531 6.11420 6.34264 6.89218 7.01279 7.58895 8.59678 9.26139 Molecular weight = 336.23amu Principal moments of inertia in cm(-1) A = 0.026827 B = 0.002480 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.455334 B =11288.147079 C =11546.412586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.003 4.003 2 N -0.495 5.495 3 C 0.020 3.980 4 C 0.061 3.939 5 C 0.497 3.503 6 O -0.584 6.584 7 N -0.603 5.603 8 C 0.121 3.879 9 C 0.052 3.948 10 N -0.525 5.525 11 C 0.054 3.946 12 C 0.136 3.864 13 N -0.643 5.643 14 C -0.229 4.229 15 H 0.089 0.911 16 C -0.069 4.069 17 N -0.954 5.954 18 Si 0.983 3.017 19 H -0.274 1.274 20 H -0.296 1.296 21 H -0.275 1.275 22 C 0.172 3.828 23 C 0.038 3.962 24 C 0.095 3.905 25 C -0.124 4.124 26 C -0.114 4.114 27 C -0.117 4.117 28 H 0.025 0.975 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.006 0.994 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.032 0.968 38 H 0.061 0.939 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.248 0.752 42 H 0.019 0.981 43 H 0.030 0.970 44 H 0.039 0.961 45 H 0.102 0.898 46 H 0.083 0.917 47 H 0.130 0.870 48 H 0.083 0.917 49 H 0.103 0.897 50 H 0.100 0.900 51 H 0.080 0.920 52 H 0.081 0.919 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.548 6.730 -19.888 26.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 N -0.219 5.219 3 C -0.128 4.128 4 C -0.032 4.032 5 C 0.285 3.715 6 O -0.463 6.463 7 N -0.336 5.336 8 C -0.002 4.002 9 C -0.077 4.077 10 N -0.250 5.250 11 C -0.055 4.055 12 C 0.011 3.989 13 N -0.370 5.370 14 C -0.357 4.357 15 H 0.107 0.893 16 C -0.262 4.262 17 N -0.603 5.603 18 Si 0.810 3.190 19 H -0.200 1.200 20 H -0.222 1.222 21 H -0.201 1.201 22 C 0.046 3.954 23 C -0.090 4.090 24 C -0.026 4.026 25 C -0.161 4.161 26 C -0.151 4.151 27 C -0.155 4.155 28 H 0.043 0.957 29 H 0.104 0.896 30 H 0.114 0.886 31 H 0.096 0.904 32 H 0.110 0.890 33 H 0.025 0.975 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.051 0.949 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.057 0.943 42 H 0.037 0.963 43 H 0.048 0.952 44 H 0.058 0.942 45 H 0.120 0.880 46 H 0.101 0.899 47 H 0.147 0.853 48 H 0.102 0.898 49 H 0.121 0.879 50 H 0.119 0.881 51 H 0.098 0.902 52 H 0.099 0.901 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 16.408 7.080 -19.863 26.718 hybrid contribution -0.683 -0.174 2.289 2.395 sum 15.725 6.906 -17.574 24.573 Atomic orbital electron populations 1.23132 0.86250 1.04484 1.01138 1.62322 1.08839 1.14205 1.36544 1.22481 1.01764 0.88067 1.00472 1.22761 0.98288 0.97192 0.85006 1.22086 0.80038 0.80208 0.89198 1.90646 1.59734 1.35875 1.60012 1.48448 1.19020 1.49531 1.16574 1.21588 0.99250 0.96129 0.83228 1.22332 0.94037 0.94566 0.96801 1.62049 1.35261 1.22598 1.05117 1.23499 0.94392 0.91151 0.96505 1.22494 0.89606 0.96768 0.90050 1.45723 1.50414 1.21518 1.19339 1.19299 1.16151 0.99689 1.00556 0.89335 1.25705 1.02716 0.99920 0.97899 1.70033 1.47554 1.28514 1.14205 0.85095 0.78735 0.78171 0.76989 1.19973 1.22197 1.20120 1.21927 0.89371 0.87638 0.96455 1.22606 0.98521 0.96916 0.90940 1.22870 0.95566 0.89996 0.94184 1.23182 1.00136 0.90856 1.01972 1.22696 0.95652 0.96407 1.00360 1.22922 0.91512 1.00086 1.00973 0.95681 0.89554 0.88562 0.90421 0.89042 0.97481 0.90699 0.90038 0.90247 0.94949 0.92141 0.92875 0.92873 0.94302 0.96332 0.95163 0.94225 0.88012 0.89886 0.85256 0.89840 0.87909 0.88106 0.90171 0.90076 0.90828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.03 7.70 127.69 0.98 0.95 16 2 N -0.50 -7.52 4.82 -899.93 -4.33 -11.86 16 3 C 0.02 0.32 9.23 127.69 1.18 1.50 16 4 C 0.06 1.07 0.24 3.31 0.00 1.07 16 5 C 0.50 12.23 5.18 87.66 0.45 12.69 16 6 O -0.58 -19.00 15.91 -3.03 -0.05 -19.05 16 7 N -0.60 -13.70 2.53 -817.95 -2.07 -15.77 16 8 C 0.12 3.11 6.58 86.35 0.57 3.67 16 9 C 0.05 1.43 5.61 86.38 0.48 1.91 16 10 N -0.52 -15.10 4.62 -868.86 -4.01 -19.11 16 11 C 0.05 1.96 3.53 45.41 0.16 2.12 16 12 C 0.14 5.24 7.13 83.18 0.59 5.83 16 13 N -0.64 -33.18 3.78 -737.86 -2.79 -35.97 16 14 C -0.23 -12.86 10.75 84.03 0.90 -11.96 16 15 H 0.09 4.68 7.83 -2.91 -0.02 4.65 16 16 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 17 N -0.95 -58.48 11.51 21.65 0.25 -58.23 16 18 Si 0.98 45.69 29.55 68.60 2.03 47.72 16 19 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 20 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 21 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 22 C 0.17 8.31 7.22 83.22 0.60 8.91 16 23 C 0.04 0.82 5.46 86.38 0.47 1.29 16 24 C 0.10 1.68 3.61 86.35 0.31 1.99 16 25 C -0.12 -1.63 5.10 31.12 0.16 -1.47 16 26 C -0.11 -1.32 8.00 31.12 0.25 -1.07 16 27 C -0.12 -1.94 6.83 31.12 0.21 -1.73 16 28 H 0.02 0.44 4.98 -2.39 -0.01 0.42 16 29 H 0.09 0.94 7.99 -2.39 -0.02 0.92 16 30 H 0.10 0.95 5.87 -2.39 -0.01 0.93 16 31 H 0.08 1.16 6.41 -2.39 -0.02 1.15 16 32 H 0.09 1.09 8.04 -2.39 -0.02 1.07 16 33 H 0.01 0.14 7.38 -2.39 -0.02 0.12 16 34 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.08 2.26 7.10 -2.39 -0.02 2.24 16 36 H 0.08 2.38 8.11 -2.38 -0.02 2.36 16 37 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.06 2.29 8.13 -2.38 -0.02 2.27 16 39 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.05 1.94 7.89 -2.39 -0.02 1.92 16 41 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 42 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.03 1.66 7.12 -2.39 -0.02 1.64 16 44 H 0.04 0.83 8.12 -2.39 -0.02 0.81 16 45 H 0.10 1.98 6.82 -2.39 -0.02 1.97 16 46 H 0.08 1.45 7.28 -2.38 -0.02 1.43 16 47 H 0.13 1.70 1.75 -2.39 0.00 1.69 16 48 H 0.08 1.23 8.03 -2.39 -0.02 1.21 16 49 H 0.10 1.00 6.48 -2.39 -0.02 0.98 16 50 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 51 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 52 H 0.08 1.28 6.42 -2.38 -0.02 1.27 16 53 H 0.07 1.44 8.06 -2.39 -0.02 1.42 16 Total: -1.00 -72.14 388.69 -2.29 -74.43 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.90 Total: 15.65 kcal Atomic # 6 Polarization: 14.39 SS G_CDS: 7.80 Total: 22.18 kcal Atomic # 7 Polarization: -127.98 SS G_CDS: -12.96 Total: -140.94 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.05 Total: -19.05 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -72.14 -2.29 -74.43 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941436693.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.600 kcal (2) G-P(sol) polarization free energy of solvation -72.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds