Wall clock time and date at job start Sat Apr 11 2020 04:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48531 * 110.99907 * 2 1 4 4 C 1.54938 * 103.22771 * 200.27693 * 3 2 1 5 5 C 1.54596 * 102.91715 * 37.41496 * 4 3 2 6 6 H 1.08999 * 110.39644 * 97.00375 * 5 4 3 7 7 C 1.50709 * 110.30442 * 219.12547 * 5 4 3 8 8 O 1.21275 * 120.00161 * 357.17065 * 7 5 4 9 9 N 1.34773 * 119.99688 * 177.17308 * 7 5 4 10 10 C 1.47082 * 120.87930 * 180.02562 * 9 7 5 11 11 C 1.53245 * 108.68191 * 231.06184 * 10 9 7 12 12 N 1.46950 * 109.31034 * 306.47034 * 11 10 9 13 13 C 1.46895 * 110.96863 * 187.06196 * 12 11 10 14 14 H 1.08993 * 110.64477 * 289.79406 * 13 12 11 15 15 C 1.55161 * 110.71904 * 52.93758 * 13 12 11 16 16 C 1.55124 * 101.48705 * 153.73555 * 15 13 12 17 17 N 1.47428 * 104.93934 * 323.21896 * 16 15 13 18 18 C 1.36938 * 125.64380 * 203.96747 * 17 16 15 19 19 H 1.08003 * 119.99930 * 180.02562 * 18 17 16 20 20 C 1.38815 * 120.00389 * 0.04400 * 18 17 16 21 21 N 1.31618 * 119.99719 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99859 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47405 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46913 * 120.00103 * 22 20 18 25 25 H 1.48496 * 109.46846 * 239.99781 * 22 20 18 26 26 C 1.47018 * 108.70622 * 24.00779 * 17 16 15 27 27 C 1.46899 * 111.44521 * 62.81017 * 12 11 10 28 28 C 1.47076 * 120.88597 * 359.97307 * 9 7 5 29 29 C 1.47894 * 111.00168 * 242.60002 * 2 1 3 30 30 H 1.08995 * 109.46947 * 177.39983 * 1 2 3 31 31 H 1.09002 * 109.47067 * 297.39450 * 1 2 3 32 32 H 1.08993 * 109.47068 * 57.39812 * 1 2 3 33 33 H 1.09002 * 110.66540 * 318.71511 * 3 2 1 34 34 H 1.09003 * 110.66891 * 81.67232 * 3 2 1 35 35 H 1.08997 * 110.72424 * 279.05392 * 4 3 2 36 36 H 1.09007 * 110.72158 * 155.77053 * 4 3 2 37 37 H 1.09002 * 109.62865 * 350.86936 * 10 9 7 38 38 H 1.09005 * 109.62997 * 111.25613 * 10 9 7 39 39 H 1.08997 * 109.49096 * 66.22372 * 11 10 9 40 40 H 1.09002 * 109.49234 * 186.30903 * 11 10 9 41 41 H 1.09004 * 110.99647 * 271.93713 * 15 13 12 42 42 H 1.08993 * 111.00721 * 35.78817 * 15 13 12 43 43 H 1.08998 * 110.41689 * 204.29425 * 16 15 13 44 44 H 1.08997 * 110.30322 * 82.08715 * 16 15 13 45 45 H 0.96997 * 119.99772 * 180.02562 * 21 20 18 46 46 H 1.09001 * 109.88137 * 239.52654 * 26 17 16 47 47 H 1.08997 * 110.01631 * 118.43001 * 26 17 16 48 48 H 1.09007 * 109.49026 * 177.02551 * 27 12 11 49 49 H 1.08994 * 109.51739 * 56.95236 * 27 12 11 50 50 H 1.08998 * 109.63032 * 248.55160 * 28 9 7 51 51 H 1.09002 * 109.62857 * 8.93473 * 28 9 7 52 52 H 1.09005 * 109.91925 * 26.49387 * 29 2 1 53 53 H 1.09000 * 109.92103 * 265.19643 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4492 1.2107 -0.5227 5 6 3.2982 0.1054 -1.5930 6 1 3.2142 0.5470 -2.5860 7 6 4.4717 -0.8387 -1.5389 8 8 5.3807 -0.6324 -0.7631 9 7 4.5110 -1.9122 -2.3529 10 6 5.6464 -2.8464 -2.3160 11 6 6.1661 -3.0440 -3.7441 12 7 5.0530 -3.4468 -4.6148 13 6 5.5372 -3.8082 -5.9538 14 1 5.8807 -2.9236 -6.4899 15 6 6.6673 -4.8674 -5.8614 16 6 6.5391 -5.5764 -7.2352 17 7 5.0908 -5.6184 -7.5076 18 6 4.4588 -6.5143 -8.3280 19 1 3.3885 -6.4613 -8.4627 20 6 5.1935 -7.4909 -8.9863 21 7 6.4979 -7.5554 -8.8223 22 14 4.3311 -8.7134 -10.1048 23 1 2.8738 -8.4286 -10.1191 24 1 4.8723 -8.5912 -11.4823 25 1 4.5618 -10.0917 -9.6028 26 6 4.4377 -4.5385 -6.7534 27 6 4.0251 -2.4001 -4.6915 28 6 3.4191 -2.1813 -3.3008 29 6 1.9991 -0.6354 -1.2258 30 1 -0.3633 -1.0266 -0.0466 31 1 -0.3633 0.4729 0.9124 32 1 -0.3633 0.5537 -0.8657 33 1 1.4236 2.0204 -0.6729 34 1 2.0013 1.7988 1.0091 35 1 4.1115 0.8837 0.2788 36 1 3.8122 2.1353 -0.9716 37 1 6.4393 -2.4346 -1.6916 38 1 5.3200 -3.8036 -1.9094 39 1 6.5900 -2.1087 -4.1095 40 1 6.9337 -3.8179 -3.7480 41 1 7.6416 -4.3907 -5.7540 42 1 6.4832 -5.5650 -5.0445 43 1 6.9443 -6.5868 -7.1809 44 1 7.0537 -5.0030 -8.0062 45 1 7.0114 -8.2375 -9.2826 46 1 3.6991 -4.9578 -6.0701 47 1 3.9548 -3.8432 -7.4399 48 1 3.2426 -2.7089 -5.3847 49 1 4.4761 -1.4719 -5.0422 50 1 2.8781 -3.0757 -2.9919 51 1 2.7373 -1.3311 -3.3248 52 1 1.2759 -0.5403 -2.0359 53 1 2.2123 -1.6874 -1.0364 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046082917.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:55:38 Heat of formation + Delta-G solvation = -0.352171 kcal Electronic energy + Delta-G solvation = -30375.827706 eV Core-core repulsion = 26475.598979 eV Total energy + Delta-G solvation = -3900.228727 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.227 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.71433 -40.19001 -39.05977 -38.00665 -35.66158 -33.90055 -33.36754 -32.28895 -31.12100 -30.01720 -29.34711 -27.56733 -26.67146 -25.89649 -24.72555 -23.53369 -22.19271 -21.88751 -21.64647 -20.99711 -19.93787 -18.90940 -18.31956 -17.46597 -17.12422 -16.99494 -16.50478 -16.10715 -16.07775 -15.90784 -15.82223 -15.31183 -15.11930 -14.92216 -14.71526 -14.29692 -14.15508 -14.01595 -13.52539 -13.46381 -13.40119 -13.17343 -12.95981 -12.88600 -12.75145 -12.59694 -12.57726 -12.46114 -12.37819 -12.20863 -12.10147 -11.94036 -11.85353 -11.77699 -11.71840 -11.56661 -11.37723 -10.81516 -10.73849 -9.84363 -9.39827 -9.26726 -8.86888 -7.76110 -5.20244 1.48095 1.48997 1.54808 1.59333 1.89464 2.49393 2.79346 3.04976 3.34812 3.34967 3.49257 3.70303 3.71013 3.78904 3.90584 4.00728 4.10625 4.17602 4.24056 4.28046 4.30495 4.33316 4.34691 4.40372 4.50877 4.54595 4.56610 4.63858 4.66877 4.72808 4.74198 4.83064 4.86542 4.91829 4.95387 4.98607 5.00716 5.01762 5.06427 5.10728 5.15471 5.23343 5.43005 5.48422 5.64040 5.81195 5.86846 6.04331 6.06231 6.11485 6.32605 6.38261 7.09377 7.12199 7.79964 8.43686 9.26323 Molecular weight = 336.23amu Principal moments of inertia in cm(-1) A = 0.022694 B = 0.002267 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.517406 B =12348.626860 C =13246.072456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.546 5.546 3 C 0.039 3.961 4 C -0.110 4.110 5 C -0.117 4.117 6 H 0.126 0.874 7 C 0.522 3.478 8 O -0.581 6.581 9 N -0.610 5.610 10 C 0.121 3.879 11 C 0.049 3.951 12 N -0.531 5.531 13 C 0.091 3.909 14 H 0.046 0.954 15 C -0.119 4.119 16 C 0.155 3.845 17 N -0.626 5.626 18 C -0.234 4.234 19 H 0.082 0.918 20 C -0.070 4.070 21 N -0.951 5.951 22 Si 0.981 3.019 23 H -0.265 1.265 24 H -0.294 1.294 25 H -0.292 1.292 26 C 0.148 3.852 27 C 0.038 3.962 28 C 0.117 3.883 29 C 0.048 3.952 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.041 0.959 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.032 0.968 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.069 0.931 43 H 0.073 0.927 44 H -0.015 1.015 45 H 0.246 0.754 46 H 0.036 0.964 47 H 0.020 0.980 48 H 0.094 0.906 49 H 0.039 0.961 50 H 0.084 0.916 51 H 0.115 0.885 52 H 0.080 0.920 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.493 19.067 16.210 27.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.271 5.271 3 C -0.089 4.089 4 C -0.148 4.148 5 C -0.139 4.139 6 H 0.144 0.856 7 C 0.312 3.688 8 O -0.461 6.461 9 N -0.343 5.343 10 C -0.002 4.002 11 C -0.080 4.080 12 N -0.257 5.257 13 C -0.018 4.018 14 H 0.064 0.936 15 C -0.158 4.158 16 C 0.029 3.971 17 N -0.353 5.353 18 C -0.363 4.363 19 H 0.100 0.900 20 C -0.262 4.262 21 N -0.601 5.601 22 Si 0.809 3.191 23 H -0.189 1.189 24 H -0.221 1.221 25 H -0.219 1.219 26 C 0.023 3.977 27 C -0.090 4.090 28 C -0.006 4.006 29 C -0.080 4.080 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.084 0.916 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.050 0.950 40 H 0.111 0.889 41 H 0.097 0.903 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.003 0.997 45 H 0.056 0.944 46 H 0.054 0.946 47 H 0.038 0.962 48 H 0.113 0.887 49 H 0.057 0.943 50 H 0.102 0.898 51 H 0.133 0.867 52 H 0.098 0.902 53 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.083 18.318 17.168 27.055 hybrid contribution 0.215 0.123 -2.008 2.024 sum -9.869 18.441 15.159 25.832 Atomic orbital electron populations 1.22560 0.86282 1.02623 1.01809 1.64724 1.09624 1.15881 1.36825 1.23284 0.94023 0.89556 1.02007 1.22437 0.97299 0.97496 0.97557 1.22250 0.92743 0.95755 1.03120 0.85622 1.20935 0.87847 0.81115 0.78921 1.90654 1.40554 1.74680 1.40228 1.48256 1.22421 1.25194 1.38414 1.21621 0.89269 0.93165 0.96114 1.22436 0.93462 0.99734 0.92326 1.61882 1.12772 1.40644 1.10376 1.22381 0.94948 0.96065 0.88410 0.93628 1.22936 0.97360 0.97296 0.98199 1.21731 0.84462 0.99773 0.91129 1.44754 1.04027 1.33615 1.52858 1.19488 0.92218 1.06350 1.18203 0.90003 1.25648 0.96480 1.01533 1.02582 1.70057 1.05881 1.36741 1.47404 0.84970 0.78076 0.78330 0.77722 1.18948 1.22072 1.21886 1.21308 0.94471 0.89341 0.92614 1.22575 0.95654 0.92873 0.97917 1.22080 0.88503 1.03450 0.86540 1.22936 0.93883 0.98888 0.92299 0.91073 0.90674 0.94065 0.91780 0.89493 0.91603 0.89248 0.89624 0.90513 0.94959 0.88914 0.90313 0.91257 0.90895 0.99684 0.94397 0.94590 0.96199 0.88742 0.94298 0.89792 0.86716 0.90239 0.90941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.40 127.69 1.20 1.36 16 2 N -0.55 -8.01 5.55 -909.18 -5.05 -13.06 16 3 C 0.04 0.47 6.56 86.65 0.57 1.04 16 4 C -0.11 -1.70 6.39 31.80 0.20 -1.49 16 5 C -0.12 -1.75 2.48 -10.66 -0.03 -1.78 16 6 H 0.13 1.29 7.71 -2.39 -0.02 1.27 16 7 C 0.52 11.69 6.91 87.66 0.61 12.30 16 8 O -0.58 -17.74 14.90 -3.02 -0.04 -17.78 16 9 N -0.61 -12.49 2.97 -817.84 -2.43 -14.93 16 10 C 0.12 2.74 6.59 86.35 0.57 3.30 16 11 C 0.05 1.16 5.40 86.38 0.47 1.63 16 12 N -0.53 -13.93 4.44 -862.85 -3.84 -17.77 16 13 C 0.09 2.98 2.65 46.11 0.12 3.10 16 14 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 15 C -0.12 -4.37 5.07 32.06 0.16 -4.21 16 16 C 0.15 7.64 5.89 86.93 0.51 8.15 16 17 N -0.63 -32.24 3.40 -691.54 -2.35 -34.59 16 18 C -0.23 -13.06 10.27 84.03 0.86 -12.20 16 19 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 20 C -0.07 -3.99 5.49 84.86 0.47 -3.52 16 21 N -0.95 -56.87 10.09 21.65 0.22 -56.65 16 22 Si 0.98 45.57 29.55 68.60 2.03 47.59 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 24 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 25 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 26 C 0.15 5.94 5.93 86.73 0.51 6.46 16 27 C 0.04 0.78 5.53 86.40 0.48 1.25 16 28 C 0.12 1.85 5.39 86.36 0.47 2.31 16 29 C 0.05 0.63 4.73 86.45 0.41 1.04 16 30 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.04 0.33 8.00 -2.39 -0.02 0.31 16 33 H 0.06 0.57 7.96 -2.39 -0.02 0.55 16 34 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.07 1.44 6.91 -2.39 -0.02 1.42 16 36 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.09 2.09 7.06 -2.39 -0.02 2.07 16 38 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 39 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.09 2.22 6.50 -2.39 -0.02 2.20 16 41 H 0.08 2.50 7.98 -2.38 -0.02 2.48 16 42 H 0.07 2.58 8.02 -2.39 -0.02 2.56 16 43 H 0.07 4.13 5.87 -2.39 -0.01 4.12 16 44 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 45 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 46 H 0.04 1.45 8.03 -2.39 -0.02 1.43 16 47 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.09 1.90 7.26 -2.38 -0.02 1.88 16 49 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 50 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 51 H 0.11 1.15 4.98 -2.39 -0.01 1.14 16 52 H 0.08 0.68 7.37 -2.38 -0.02 0.66 16 53 H 0.07 1.16 7.02 -2.39 -0.02 1.15 16 Total: -1.00 -71.47 393.29 -3.01 -74.48 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 0.87 Total: 13.94 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: 7.58 Total: 18.75 kcal Atomic # 7 Polarization: -123.55 SS G_CDS: -13.45 Total: -136.99 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.04 Total: -17.78 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.59 kcal Total: -71.47 -3.01 -74.48 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046082917.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.129 kcal (2) G-P(sol) polarization free energy of solvation -71.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds