Wall clock time and date at job start Sat Apr 11 2020 04:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.47852 * 111.00218 * 2 1 4 4 C 1.54909 * 104.79649 * 146.36195 * 3 2 1 5 5 C 1.55141 * 101.65303 * 322.92796 * 4 3 2 6 6 C 1.47449 * 110.99983 * 120.84136 * 2 1 3 7 7 H 1.09000 * 109.88905 * 117.17335 * 6 2 1 8 8 C 1.50701 * 109.88747 * 356.14814 * 6 2 1 9 9 O 1.21284 * 120.00009 * 308.14574 * 8 6 2 10 10 N 1.34777 * 120.00194 * 128.14335 * 8 6 2 11 11 C 1.47021 * 125.64601 * 359.97198 * 10 8 6 12 12 C 1.54323 * 107.27070 * 178.96253 * 11 10 8 13 13 C 1.55155 * 102.94220 * 337.80870 * 12 11 10 14 14 H 1.09000 * 111.01259 * 277.39035 * 13 12 11 15 15 N 1.46901 * 111.00514 * 153.57512 * 13 12 11 16 16 C 1.46898 * 110.99907 * 71.45443 * 15 13 12 17 17 C 1.53246 * 109.33939 * 187.25649 * 16 15 13 18 18 N 1.47084 * 108.51742 * 306.17082 * 17 16 15 19 19 C 1.36939 * 120.87470 * 231.18291 * 18 17 16 20 20 H 1.07993 * 120.00361 * 27.62563 * 19 18 17 21 21 C 1.38817 * 119.99584 * 207.61685 * 19 18 17 22 22 N 1.31609 * 120.00060 * 29.09060 * 21 19 18 23 23 Si 1.86799 * 119.99792 * 209.08682 * 21 19 18 24 24 H 1.48502 * 109.47124 * 94.99320 * 23 21 19 25 25 H 1.48498 * 109.47162 * 214.98828 * 23 21 19 26 26 H 1.48496 * 109.47429 * 334.99260 * 23 21 19 27 27 C 1.47076 * 118.23820 * 51.46178 * 18 17 16 28 28 C 1.46900 * 111.00363 * 195.75851 * 15 13 12 29 29 C 1.47419 * 125.64960 * 180.02562 * 10 8 6 30 30 H 1.09001 * 109.47145 * 308.66906 * 1 2 3 31 31 H 1.09007 * 109.46945 * 68.66452 * 1 2 3 32 32 H 1.08996 * 109.47501 * 188.66463 * 1 2 3 33 33 H 1.08995 * 110.37229 * 265.18851 * 3 2 1 34 34 H 1.09001 * 110.37062 * 27.53454 * 3 2 1 35 35 H 1.08995 * 110.99363 * 81.01831 * 4 3 2 36 36 H 1.09004 * 110.98834 * 204.80337 * 4 3 2 37 37 H 1.08991 * 110.70961 * 277.27265 * 5 4 3 38 38 H 1.09006 * 110.70448 * 154.03189 * 5 4 3 39 39 H 1.09001 * 109.87943 * 59.54658 * 11 10 8 40 40 H 1.09001 * 109.88392 * 298.38437 * 11 10 8 41 41 H 1.08996 * 110.71826 * 219.44907 * 12 11 10 42 42 H 1.08997 * 110.87489 * 96.24511 * 12 11 10 43 43 H 1.09000 * 109.49392 * 67.29586 * 16 15 13 44 44 H 1.09004 * 109.49301 * 307.21274 * 16 15 13 45 45 H 1.08993 * 109.62553 * 186.46211 * 17 16 15 46 46 H 1.09002 * 109.78638 * 65.97299 * 17 16 15 47 47 H 0.96999 * 120.00308 * 180.02562 * 22 21 19 48 48 H 1.08999 * 109.62991 * 68.24735 * 27 18 17 49 49 H 1.08998 * 109.62564 * 188.82896 * 27 18 17 50 50 H 1.08996 * 109.49287 * 292.70713 * 28 15 13 51 51 H 1.09008 * 109.49036 * 52.78446 * 28 15 13 52 52 H 1.09007 * 110.36795 * 85.26699 * 29 10 8 53 53 H 1.09000 * 110.37088 * 322.94750 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9988 1.3803 0.0000 4 6 3.3047 1.3027 0.8297 5 6 2.9158 0.2822 1.9316 6 6 1.9973 -0.7057 1.1819 7 1 2.5672 -1.5801 0.8676 8 6 0.8610 -1.1291 2.0767 9 8 0.0314 -0.3174 2.4285 10 7 0.7667 -2.4098 2.4859 11 6 1.6983 -3.4919 2.1359 12 6 1.2069 -4.7685 2.8504 13 6 0.3501 -4.2067 4.0155 14 1 0.9772 -3.9261 4.8618 15 7 -0.6801 -5.1709 4.4241 16 6 -0.0819 -6.3151 5.1248 17 6 -1.1580 -7.3776 5.3724 18 7 -2.2886 -6.7442 6.0681 19 6 -2.8007 -7.2873 7.2161 20 1 -2.1687 -7.8776 7.8630 21 6 -4.1323 -7.0790 7.5484 22 7 -5.0262 -6.8950 6.6002 23 14 -4.6554 -7.0598 9.3416 24 1 -4.6812 -5.6593 9.8347 25 1 -6.0103 -7.6541 9.4684 26 1 -3.6906 -7.8505 10.1472 27 6 -2.8583 -5.5155 5.4946 28 6 -1.7115 -4.5231 5.2454 29 6 -0.2884 -2.9577 3.3576 30 1 -0.3633 0.6421 0.8024 31 1 -0.3633 0.3739 -0.9573 32 1 -0.3634 -1.0159 0.1548 33 1 2.2148 1.7038 -1.0182 34 1 1.2889 2.0593 0.4724 35 1 4.1302 0.9281 0.2244 36 1 3.5498 2.2722 1.2635 37 1 2.3743 0.7747 2.7392 38 1 3.8000 -0.2279 2.3138 39 1 2.7030 -3.2404 2.4756 40 1 1.6976 -3.6473 1.0570 41 1 2.0492 -5.3442 3.2339 42 1 0.5976 -5.3773 2.1824 43 1 0.3283 -5.9835 6.0787 44 1 0.7147 -6.7398 4.5138 45 1 -0.7485 -8.1762 5.9909 46 1 -1.4970 -7.7882 4.4213 47 1 -5.9566 -6.7491 6.8324 48 1 -3.3568 -5.7476 4.5535 49 1 -3.5735 -5.0825 6.1940 50 1 -1.2787 -4.2165 6.1976 51 1 -2.0967 -3.6480 4.7219 52 1 -1.1587 -3.2430 2.7666 53 1 -0.5680 -2.2292 4.1187 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051996318.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:55:59 Heat of formation + Delta-G solvation = 1.510880 kcal Electronic energy + Delta-G solvation = -30571.926974 eV Core-core repulsion = 26671.779034 eV Total energy + Delta-G solvation = -3900.147939 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.227 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.93947 -40.37141 -38.90068 -37.87500 -35.85368 -33.49516 -33.10108 -32.13705 -31.62560 -30.60009 -29.50191 -27.68000 -26.65131 -25.28292 -24.56674 -23.92863 -22.52975 -22.23907 -21.58888 -20.84439 -19.89673 -18.84905 -18.62876 -17.61439 -17.06238 -16.77116 -16.69149 -16.27650 -15.95765 -15.62651 -15.41361 -15.40094 -15.32736 -14.90197 -14.84561 -14.66537 -14.25487 -13.96523 -13.81738 -13.71283 -13.40512 -13.23044 -13.10996 -12.93329 -12.75766 -12.63297 -12.59458 -12.48819 -12.24899 -12.22106 -12.08424 -12.07148 -11.90816 -11.82675 -11.73989 -11.46676 -11.36586 -11.10123 -10.56022 -9.81983 -9.36171 -9.34244 -8.75789 -7.94642 -5.31883 1.37264 1.42783 1.46085 1.54845 1.78808 2.48515 2.89837 2.96177 3.16551 3.22323 3.49444 3.63235 3.66169 3.68527 3.73988 4.03910 4.11529 4.17295 4.25162 4.29157 4.31354 4.32880 4.36562 4.49533 4.50073 4.54834 4.56475 4.62053 4.65594 4.75426 4.76605 4.82654 4.84420 4.87861 4.92870 4.95015 4.99124 5.03409 5.08252 5.10604 5.18451 5.25250 5.28040 5.29551 5.53187 5.64141 5.74329 5.82665 6.08424 6.21809 6.31916 6.41253 6.98457 7.07442 7.80345 8.36772 9.11325 Molecular weight = 336.23amu Principal moments of inertia in cm(-1) A = 0.024308 B = 0.002312 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.618274 B =12108.709517 C =12588.775789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.512 5.512 3 C 0.031 3.969 4 C -0.117 4.117 5 C -0.128 4.128 6 C 0.058 3.942 7 H 0.127 0.873 8 C 0.512 3.488 9 O -0.582 6.582 10 N -0.613 5.613 11 C 0.099 3.901 12 C -0.112 4.112 13 C 0.073 3.927 14 H 0.056 0.944 15 N -0.527 5.527 16 C 0.059 3.941 17 C 0.143 3.857 18 N -0.611 5.611 19 C -0.271 4.271 20 H 0.067 0.933 21 C -0.043 4.043 22 N -0.924 5.924 23 Si 0.955 3.045 24 H -0.288 1.288 25 H -0.295 1.295 26 H -0.265 1.265 27 C 0.188 3.812 28 C 0.052 3.948 29 C 0.116 3.884 30 H 0.040 0.960 31 H 0.077 0.923 32 H 0.046 0.954 33 H 0.100 0.900 34 H 0.037 0.963 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.053 0.947 38 H 0.107 0.893 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.108 0.892 42 H 0.084 0.916 43 H 0.025 0.975 44 H 0.105 0.895 45 H 0.062 0.938 46 H 0.017 0.983 47 H 0.251 0.749 48 H 0.002 0.998 49 H 0.040 0.960 50 H 0.021 0.979 51 H 0.073 0.927 52 H 0.063 0.937 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.613 12.790 -14.088 29.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.236 5.236 3 C -0.096 4.096 4 C -0.155 4.155 5 C -0.167 4.167 6 C -0.053 4.053 7 H 0.144 0.856 8 C 0.301 3.699 9 O -0.462 6.462 10 N -0.347 5.347 11 C -0.022 4.022 12 C -0.150 4.150 13 C -0.036 4.036 14 H 0.074 0.926 15 N -0.252 5.252 16 C -0.069 4.069 17 C 0.017 3.983 18 N -0.335 5.335 19 C -0.401 4.401 20 H 0.085 0.915 21 C -0.240 4.240 22 N -0.568 5.568 23 Si 0.783 3.217 24 H -0.216 1.216 25 H -0.222 1.222 26 H -0.190 1.190 27 C 0.062 3.938 28 C -0.078 4.078 29 C -0.007 4.007 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.065 0.935 33 H 0.118 0.882 34 H 0.056 0.944 35 H 0.116 0.884 36 H 0.108 0.892 37 H 0.072 0.928 38 H 0.125 0.875 39 H 0.116 0.884 40 H 0.109 0.891 41 H 0.126 0.874 42 H 0.103 0.897 43 H 0.043 0.957 44 H 0.123 0.877 45 H 0.080 0.920 46 H 0.035 0.965 47 H 0.060 0.940 48 H 0.020 0.980 49 H 0.058 0.942 50 H 0.039 0.961 51 H 0.091 0.909 52 H 0.081 0.919 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 21.959 12.835 -14.796 29.426 hybrid contribution -1.555 0.588 2.545 3.040 sum 20.404 13.423 -12.251 27.324 Atomic orbital electron populations 1.22774 0.87926 1.00985 1.01688 1.64181 1.08149 1.15977 1.35338 1.23294 0.96251 0.88110 1.01953 1.22714 0.97196 0.99683 0.95883 1.22781 0.99226 0.96562 0.98124 1.22825 0.93075 1.00441 0.88993 0.85578 1.21379 0.87385 0.80275 0.80824 1.90675 1.44770 1.52105 1.58643 1.48659 1.28194 1.08821 1.48998 1.22367 0.93492 0.85105 1.01278 1.22688 0.99932 0.96604 0.95761 1.22759 0.92499 0.91031 0.97359 0.92617 1.61950 1.12370 1.08556 1.42302 1.22473 0.96762 0.91463 0.96242 1.21162 0.88069 0.94161 0.94887 1.44453 1.36547 1.25220 1.27324 1.19415 0.92436 1.30876 0.97379 0.91531 1.25689 0.95530 1.01895 1.00895 1.70315 1.01096 1.52636 1.32767 0.85446 0.77124 0.77633 0.81504 1.21550 1.22187 1.18964 1.20588 0.92447 0.85824 0.94966 1.22608 0.93825 0.96836 0.94495 1.22074 0.91066 0.94442 0.93151 0.94126 0.90477 0.93536 0.88159 0.94425 0.88370 0.89174 0.92850 0.87502 0.88363 0.89137 0.87389 0.89736 0.95680 0.87708 0.91995 0.96506 0.94026 0.97969 0.94166 0.96076 0.90912 0.91910 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.34 8.18 127.69 1.04 1.38 16 2 N -0.51 -9.63 5.44 -890.89 -4.85 -14.48 16 3 C 0.03 0.46 6.73 86.77 0.58 1.05 16 4 C -0.12 -1.22 7.08 31.98 0.23 -0.99 16 5 C -0.13 -1.77 6.45 31.78 0.21 -1.57 16 6 C 0.06 1.00 3.64 44.51 0.16 1.16 16 7 H 0.13 1.58 6.69 -2.39 -0.02 1.57 16 8 C 0.51 12.59 4.97 87.66 0.44 13.02 16 9 O -0.58 -19.23 14.00 -3.04 -0.04 -19.27 16 10 N -0.61 -13.61 3.33 -811.75 -2.70 -16.31 16 11 C 0.10 1.36 5.82 86.73 0.51 1.87 16 12 C -0.11 -1.81 5.79 31.78 0.18 -1.62 16 13 C 0.07 1.76 2.73 46.31 0.13 1.89 16 14 H 0.06 1.36 8.13 -2.39 -0.02 1.34 16 15 N -0.53 -16.82 4.53 -860.91 -3.90 -20.72 16 16 C 0.06 1.86 5.53 86.39 0.48 2.34 16 17 C 0.14 5.81 6.69 86.35 0.58 6.39 16 18 N -0.61 -31.12 3.02 -697.24 -2.10 -33.23 16 19 C -0.27 -15.12 9.52 84.03 0.80 -14.32 16 20 H 0.07 3.62 7.98 -2.91 -0.02 3.60 16 21 C -0.04 -2.45 4.57 84.86 0.39 -2.06 16 22 N -0.92 -56.02 12.06 21.65 0.26 -55.76 16 23 Si 0.95 45.35 29.64 68.60 2.03 47.38 16 24 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 25 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 26 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 27 C 0.19 9.29 5.57 86.50 0.48 9.78 16 28 C 0.05 2.00 5.40 86.54 0.47 2.47 16 29 C 0.12 3.14 4.92 86.86 0.43 3.57 16 30 H 0.04 1.14 5.79 -2.39 -0.01 1.12 16 31 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 32 H 0.05 1.19 6.96 -2.39 -0.02 1.17 16 33 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.04 0.67 7.63 -2.39 -0.02 0.65 16 35 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.05 1.01 7.71 -2.39 -0.02 0.99 16 38 H 0.11 0.94 8.14 -2.38 -0.02 0.92 16 39 H 0.10 0.84 8.12 -2.39 -0.02 0.82 16 40 H 0.09 1.00 8.01 -2.39 -0.02 0.98 16 41 H 0.11 1.23 8.01 -2.39 -0.02 1.21 16 42 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.10 2.46 7.29 -2.38 -0.02 2.44 16 45 H 0.06 2.42 7.95 -2.39 -0.02 2.40 16 46 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 48 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 49 H 0.04 2.22 6.57 -2.39 -0.02 2.20 16 50 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 51 H 0.07 2.64 6.43 -2.38 -0.02 2.63 16 52 H 0.06 1.92 7.99 -2.38 -0.02 1.90 16 53 H 0.05 1.68 7.80 -2.39 -0.02 1.67 16 Total: -1.00 -72.69 395.72 -3.34 -76.03 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: 0.87 Total: 12.02 kcal Atomic # 6 Polarization: 17.24 SS G_CDS: 7.09 Total: 24.34 kcal Atomic # 7 Polarization: -127.20 SS G_CDS: -13.29 Total: -140.49 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.04 Total: -19.27 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -72.69 -3.34 -76.03 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051996318.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.538 kcal (2) G-P(sol) polarization free energy of solvation -72.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds