Wall clock time and date at job start Sat Apr 11 2020 04:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30638 * 1 3 3 Si 1.86799 * 119.99753 * 2 1 4 4 H 1.48501 * 109.47487 * 240.00306 * 3 2 1 5 5 H 1.48501 * 109.47352 * 0.02562 * 3 2 1 6 6 H 1.48512 * 109.46867 * 120.00428 * 3 2 1 7 7 C 1.40118 * 120.00039 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00336 * 179.97438 * 7 2 1 9 9 C 1.46136 * 120.00269 * 359.97438 * 7 2 1 10 10 O 1.21750 * 119.99684 * 0.02562 * 9 7 2 11 11 N 1.34777 * 120.00381 * 180.02562 * 9 7 2 12 12 C 1.39536 * 120.00130 * 185.27850 * 11 9 7 13 13 C 1.39139 * 120.01696 * 33.46598 * 12 11 9 14 14 C 1.38100 * 120.16485 * 180.02562 * 13 12 11 15 15 C 1.38243 * 120.19219 * 359.97438 * 14 13 12 16 16 Br 1.89102 * 119.98348 * 179.97438 * 15 14 13 17 17 C 1.39458 * 120.02817 * 0.25046 * 15 14 13 18 18 C 1.48455 * 120.08472 * 179.74589 * 17 15 14 19 19 N 1.34050 * 126.68148 * 179.69134 * 18 17 15 20 20 N 1.28977 * 107.27200 * 179.83290 * 19 18 17 21 21 N 1.28734 * 108.94670 * 0.43396 * 20 19 18 22 22 H 0.96999 * 125.34429 * 179.73884 * 21 20 19 23 23 N 1.28869 * 109.31531 * 359.72129 * 21 20 19 24 24 C 1.38823 * 120.01508 * 213.45100 * 12 11 9 25 25 H 0.96996 * 119.99985 * 359.97438 * 1 2 3 26 26 H 0.96996 * 120.00084 * 5.27300 * 11 9 7 27 27 H 1.08005 * 119.92302 * 359.97438 * 13 12 11 28 28 H 1.08004 * 119.90002 * 179.97438 * 14 13 12 29 29 H 1.07997 * 120.09079 * 359.97438 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.0940 1.6966 -1.2125 5 1 1.2753 2.7465 0.0006 6 1 3.0942 1.6964 1.2126 7 6 2.0070 -1.2134 -0.0005 8 1 3.0870 -1.2135 -0.0010 9 6 1.2764 -2.4791 -0.0005 10 8 0.0589 -2.4791 -0.0005 11 7 1.9502 -3.6463 -0.0005 12 6 1.2570 -4.8521 -0.1117 13 6 0.0956 -4.9195 -0.8749 14 6 -0.5932 -6.1113 -0.9866 15 6 -0.1324 -7.2437 -0.3413 16 35 -1.0807 -8.8723 -0.4977 17 6 1.0282 -7.1841 0.4295 18 6 1.5210 -8.3981 1.1276 19 7 2.6172 -8.4919 1.8934 20 7 2.6881 -9.7095 2.3131 21 7 1.6941 -10.3744 1.8365 22 1 1.5185 -11.3145 1.9986 23 7 0.9688 -9.5950 1.1104 24 6 1.7259 -5.9853 0.5389 25 1 -0.4850 0.8400 0.0004 26 1 2.9171 -3.6481 0.0767 27 1 -0.2687 -4.0375 -1.3807 28 1 -1.4945 -6.1586 -1.5799 29 1 2.6276 -5.9354 1.1313 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592671931.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:52:53 Heat of formation + Delta-G solvation = 121.313356 kcal Electronic energy + Delta-G solvation = -19727.590264 eV Core-core repulsion = 16314.327445 eV Total energy + Delta-G solvation = -3413.262819 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 336.991 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.36221 -39.47980 -37.27665 -34.36543 -34.00867 -33.11889 -32.58890 -31.07155 -30.40858 -28.28865 -26.21364 -24.63465 -24.34207 -22.01343 -21.78069 -19.86564 -19.03288 -17.70554 -17.06915 -16.74601 -15.67921 -15.43469 -14.83812 -14.51379 -14.04044 -14.02476 -13.42538 -13.16800 -12.66884 -12.53389 -12.35664 -11.63457 -11.41282 -11.33794 -11.24353 -11.19464 -11.08208 -10.81339 -10.72889 -10.56605 -10.42336 -9.51665 -9.25794 -8.94685 -8.55357 -7.89700 -7.28901 -6.43548 -4.91340 0.86003 1.27709 1.55518 1.88532 2.31072 2.54268 3.05187 3.10896 3.12440 3.70945 3.92038 3.96364 4.22978 4.40459 4.51327 5.12660 5.27255 5.48295 5.52416 5.67771 5.69476 5.88830 6.14554 6.28659 6.41135 6.56297 6.77945 6.99501 7.21274 7.58886 7.84964 8.03665 8.20915 8.76370 9.06351 10.25822 10.46557 Molecular weight = 336.99amu Principal moments of inertia in cm(-1) A = 0.022402 B = 0.003266 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.561640 B = 8571.343557 C = 9684.891951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.757 5.757 2 C 0.086 3.914 3 Si 0.914 3.086 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.535 4.535 8 H 0.074 0.926 9 C 0.541 3.459 10 O -0.558 6.558 11 N -0.695 5.695 12 C 0.210 3.790 13 C -0.105 4.105 14 C -0.072 4.072 15 C -0.104 4.104 16 Br -0.043 7.043 17 C 0.024 3.976 18 C 0.218 3.782 19 N -0.264 5.264 20 N -0.060 5.060 21 N -0.236 5.236 22 H 0.471 0.529 23 N -0.268 5.268 24 C -0.131 4.131 25 H 0.274 0.726 26 H 0.398 0.602 27 H 0.153 0.847 28 H 0.135 0.865 29 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.923 -18.182 -0.514 18.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.136 4.136 3 Si 0.738 3.262 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.570 4.570 8 H 0.092 0.908 9 C 0.348 3.652 10 O -0.440 6.440 11 N -0.337 5.337 12 C 0.110 3.890 13 C -0.127 4.127 14 C -0.092 4.092 15 C -0.188 4.188 16 Br 0.043 6.957 17 C 0.018 3.982 18 C -0.062 4.062 19 N -0.137 5.137 20 N -0.055 5.055 21 N -0.082 5.082 22 H 0.325 0.675 23 N -0.119 5.119 24 C -0.155 4.155 25 H 0.085 0.915 26 H 0.232 0.768 27 H 0.170 0.830 28 H 0.152 0.848 29 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.038 -18.878 -0.187 18.879 hybrid contribution 0.724 0.753 0.039 1.045 sum 0.687 -18.125 -0.148 18.139 Atomic orbital electron populations 1.69960 1.07179 1.28128 1.33162 1.25751 0.94743 1.00607 0.92482 0.86311 0.79798 0.80365 0.79690 1.19046 1.20357 1.19061 1.20816 0.93919 0.88829 1.53479 0.90817 1.18417 0.87512 0.81955 0.77300 1.90653 1.13592 1.85853 1.53888 1.44301 1.10021 1.04015 1.75407 1.17894 0.93064 0.86489 0.91600 1.21566 0.95394 0.97938 0.97834 1.20867 0.99590 0.90478 0.98312 1.21478 0.97913 0.93057 1.06302 1.96592 1.73861 1.28083 1.97187 1.16697 0.94752 0.88608 0.98121 1.23645 0.91349 0.92439 0.98770 1.76071 1.17388 1.08344 1.11925 1.78843 1.09782 0.99579 1.17269 1.48013 1.15248 1.14557 1.30341 0.67534 1.75846 1.19490 1.02206 1.14392 1.20867 1.02361 0.90894 1.01424 0.91521 0.76812 0.82985 0.84760 0.84256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.06 11.82 55.55 0.66 -20.41 15 2 C 0.09 2.22 5.50 -17.35 -0.10 2.13 15 3 Si 0.91 18.77 29.56 -169.99 -5.02 13.75 15 4 H -0.27 -5.31 7.11 56.52 0.40 -4.91 15 5 H -0.28 -5.62 7.11 56.52 0.40 -5.22 15 6 H -0.27 -5.35 7.11 56.52 0.40 -4.94 15 7 C -0.53 -13.85 9.53 -35.71 -0.34 -14.19 15 8 H 0.07 1.72 7.85 -52.48 -0.41 1.31 15 9 C 0.54 14.05 7.47 -13.09 -0.10 13.95 15 10 O -0.56 -16.35 12.70 5.14 0.07 -16.28 15 11 N -0.69 -14.45 5.32 -11.23 -0.06 -14.51 15 12 C 0.21 4.06 6.27 -83.80 -0.53 3.53 15 13 C -0.10 -2.02 8.65 -39.30 -0.34 -2.36 15 14 C -0.07 -1.18 9.77 -39.63 -0.39 -1.56 15 15 C -0.10 -1.66 6.25 -39.12 -0.24 -1.91 15 16 Br -0.04 -0.58 30.52 -68.01 -2.08 -2.65 15 17 C 0.02 0.40 5.88 -104.90 -0.62 -0.22 15 18 C 0.22 3.32 7.85 -156.29 -1.23 2.10 15 19 N -0.26 -4.02 12.23 32.16 0.39 -3.62 15 20 N -0.06 -0.75 13.47 60.35 0.81 0.06 15 21 N -0.24 -2.34 7.90 60.35 0.48 -1.86 15 22 H 0.47 2.24 8.96 -340.37 -3.05 -0.81 15 23 N -0.27 -3.48 9.26 32.17 0.30 -3.18 15 24 C -0.13 -2.22 9.62 -39.03 -0.38 -2.60 15 25 H 0.27 6.94 8.29 -40.82 -0.34 6.60 15 26 H 0.40 7.01 8.79 -40.82 -0.36 6.65 15 27 H 0.15 3.30 6.41 -52.48 -0.34 2.97 15 28 H 0.13 1.90 8.06 -52.48 -0.42 1.48 15 29 H 0.14 2.18 7.88 -52.49 -0.41 1.77 15 LS Contribution 287.12 15.07 4.33 4.33 Total: -1.00 -32.10 287.12 -8.51 -40.61 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -4.13 Total: 4.88 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -4.25 Total: -1.12 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: 2.58 Total: -43.52 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: 0.07 Total: -16.28 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.02 Total: 13.75 kcal Atomic # 35 Polarization: -0.58 SS G_CDS: -2.08 Total: -2.65 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -32.10 -8.51 -40.61 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592671931.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.924 kcal (2) G-P(sol) polarization free energy of solvation -32.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds