Wall clock time and date at job start Sat Apr 11 2020 04:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30638 * 1 3 3 Si 1.86799 * 119.99753 * 2 1 4 4 H 1.48501 * 109.47487 * 240.00306 * 3 2 1 5 5 H 1.48501 * 109.47352 * 0.02562 * 3 2 1 6 6 H 1.48512 * 109.46867 * 120.00428 * 3 2 1 7 7 C 1.40118 * 120.00039 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00336 * 179.97438 * 7 2 1 9 9 C 1.46136 * 120.00269 * 359.97438 * 7 2 1 10 10 O 1.21750 * 119.99684 * 0.02562 * 9 7 2 11 11 N 1.34777 * 120.00381 * 180.02562 * 9 7 2 12 12 C 1.39536 * 120.00130 * 185.27850 * 11 9 7 13 13 C 1.39139 * 120.01696 * 33.46598 * 12 11 9 14 14 C 1.38100 * 120.16485 * 180.02562 * 13 12 11 15 15 C 1.38243 * 120.19219 * 359.97438 * 14 13 12 16 16 Br 1.89102 * 119.98348 * 179.97438 * 15 14 13 17 17 C 1.39458 * 120.02817 * 0.25046 * 15 14 13 18 18 C 1.48455 * 120.08472 * 179.74589 * 17 15 14 19 19 N 1.34050 * 126.68148 * 179.69134 * 18 17 15 20 20 N 1.28977 * 107.27200 * 179.83290 * 19 18 17 21 21 N 1.28734 * 108.94670 * 0.43396 * 20 19 18 22 22 H 0.96999 * 125.34429 * 179.73884 * 21 20 19 23 23 N 1.28869 * 109.31531 * 359.72129 * 21 20 19 24 24 C 1.38823 * 120.01508 * 213.45100 * 12 11 9 25 25 H 0.96996 * 119.99985 * 359.97438 * 1 2 3 26 26 H 0.96996 * 120.00084 * 5.27300 * 11 9 7 27 27 H 1.08005 * 119.92302 * 359.97438 * 13 12 11 28 28 H 1.08004 * 119.90002 * 179.97438 * 14 13 12 29 29 H 1.07997 * 120.09079 * 359.97438 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.0940 1.6966 -1.2125 5 1 1.2753 2.7465 0.0006 6 1 3.0942 1.6964 1.2126 7 6 2.0070 -1.2134 -0.0005 8 1 3.0870 -1.2135 -0.0010 9 6 1.2764 -2.4791 -0.0005 10 8 0.0589 -2.4791 -0.0005 11 7 1.9502 -3.6463 -0.0005 12 6 1.2570 -4.8521 -0.1117 13 6 0.0956 -4.9195 -0.8749 14 6 -0.5932 -6.1113 -0.9866 15 6 -0.1324 -7.2437 -0.3413 16 35 -1.0807 -8.8723 -0.4977 17 6 1.0282 -7.1841 0.4295 18 6 1.5210 -8.3981 1.1276 19 7 2.6172 -8.4919 1.8934 20 7 2.6881 -9.7095 2.3131 21 7 1.6941 -10.3744 1.8365 22 1 1.5185 -11.3145 1.9986 23 7 0.9688 -9.5950 1.1104 24 6 1.7259 -5.9853 0.5389 25 1 -0.4850 0.8400 0.0004 26 1 2.9171 -3.6481 0.0767 27 1 -0.2687 -4.0375 -1.3807 28 1 -1.4945 -6.1586 -1.5799 29 1 2.6276 -5.9354 1.1313 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592671931.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:52:52 Heat of formation + Delta-G solvation = 98.548721 kcal Electronic energy + Delta-G solvation = -19728.577413 eV Core-core repulsion = 16314.327445 eV Total energy + Delta-G solvation = -3414.249968 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 336.991 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -45.41060 -41.00424 -38.99113 -35.76333 -35.29972 -34.59369 -34.32950 -32.44728 -31.69112 -29.82388 -28.02839 -25.73010 -25.56684 -23.41036 -23.26723 -21.41703 -20.14520 -19.47145 -18.22974 -18.10170 -17.55857 -16.87001 -16.33843 -15.97187 -15.68788 -15.22115 -14.78211 -14.61119 -14.43977 -14.21477 -13.47814 -13.23540 -12.94384 -12.79122 -12.66886 -12.50813 -12.39657 -12.34894 -12.08248 -12.02509 -11.85830 -10.96583 -10.66752 -10.62272 -10.01224 -9.76648 -8.85441 -8.36104 -6.93351 -0.39367 0.14585 0.23316 0.62249 1.28864 1.43204 1.45533 1.48252 1.57563 2.21767 2.33252 2.53883 2.71003 2.87006 3.19015 3.57342 3.82580 4.00533 4.27449 4.29015 4.43646 4.54387 4.82046 4.91463 5.15909 5.27324 5.33553 5.52666 5.68236 5.78870 6.14369 6.23047 6.79522 7.15040 7.28844 8.32984 8.56727 Molecular weight = 336.99amu Principal moments of inertia in cm(-1) A = 0.022402 B = 0.003266 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.561640 B = 8571.343557 C = 9684.891951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.031 3.969 3 Si 0.998 3.002 4 H -0.254 1.254 5 H -0.275 1.275 6 H -0.255 1.255 7 C -0.562 4.562 8 H 0.094 0.906 9 C 0.531 3.469 10 O -0.602 6.602 11 N -0.689 5.689 12 C 0.187 3.813 13 C -0.124 4.124 14 C -0.064 4.064 15 C -0.104 4.104 16 Br -0.011 7.011 17 C 0.025 3.975 18 C 0.200 3.800 19 N -0.287 5.287 20 N -0.057 5.057 21 N -0.202 5.202 22 H 0.493 0.507 23 N -0.263 5.263 24 C -0.121 4.121 25 H 0.278 0.722 26 H 0.411 0.589 27 H 0.120 0.880 28 H 0.156 0.844 29 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.942 -19.819 -0.117 19.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.185 4.185 3 Si 0.817 3.183 4 H -0.178 1.178 5 H -0.200 1.200 6 H -0.179 1.179 7 C -0.597 4.597 8 H 0.112 0.888 9 C 0.338 3.662 10 O -0.487 6.487 11 N -0.333 5.333 12 C 0.087 3.913 13 C -0.147 4.147 14 C -0.084 4.084 15 C -0.187 4.187 16 Br 0.074 6.926 17 C 0.019 3.981 18 C -0.079 4.079 19 N -0.159 5.159 20 N -0.052 5.052 21 N -0.053 5.053 22 H 0.352 0.648 23 N -0.115 5.115 24 C -0.145 4.145 25 H 0.088 0.912 26 H 0.248 0.752 27 H 0.138 0.862 28 H 0.173 0.827 29 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.019 -20.600 0.216 20.626 hybrid contribution 0.357 0.921 -0.062 0.990 sum 1.376 -19.679 0.155 19.727 Atomic orbital electron populations 1.70118 1.09434 1.29489 1.34758 1.26951 0.95549 1.04873 0.91176 0.85048 0.78223 0.74641 0.80342 1.17755 1.19982 1.17903 1.21364 0.95131 0.89430 1.53784 0.88761 1.18684 0.87192 0.83519 0.76764 1.90612 1.15401 1.86975 1.55726 1.43808 1.10574 1.03533 1.75343 1.18016 0.93610 0.86552 0.93076 1.21373 0.96323 0.98054 0.98901 1.20994 0.99738 0.89595 0.98073 1.21676 0.97782 0.94118 1.05103 1.96612 1.73059 1.25834 1.97073 1.16828 0.94594 0.88958 0.97737 1.23418 0.92082 0.92666 0.99769 1.76066 1.17782 1.09527 1.12544 1.78800 1.10161 0.99048 1.17151 1.48053 1.13730 1.15303 1.28247 0.64777 1.75765 1.19571 1.01715 1.14482 1.20882 1.02565 0.90290 1.00732 0.91173 0.75224 0.86222 0.82682 0.83049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -46.68 11.82 21.85 0.26 -46.42 15 2 C 0.03 1.65 5.50 85.33 0.47 2.12 15 3 Si 1.00 38.52 29.56 68.60 2.03 40.55 15 4 H -0.25 -9.21 7.11 99.48 0.71 -8.50 15 5 H -0.28 -10.32 7.11 99.48 0.71 -9.62 15 6 H -0.26 -9.32 7.11 99.48 0.71 -8.61 15 7 C -0.56 -29.66 9.53 24.78 0.24 -29.42 15 8 H 0.09 4.39 7.85 -2.91 -0.02 4.37 15 9 C 0.53 28.74 7.47 86.29 0.64 29.38 15 10 O -0.60 -37.19 12.70 -4.51 -0.06 -37.25 15 11 N -0.69 -29.58 5.32 -307.63 -1.64 -31.22 15 12 C 0.19 7.40 6.27 38.27 0.24 7.64 15 13 C -0.12 -4.97 8.65 22.45 0.19 -4.78 15 14 C -0.06 -2.08 9.77 22.24 0.22 -1.87 15 15 C -0.10 -3.17 6.25 22.57 0.14 -3.03 15 16 Br -0.01 -0.28 30.52 -20.37 -0.62 -0.90 15 17 C 0.02 0.78 5.88 -20.04 -0.12 0.66 15 18 C 0.20 5.72 7.85 137.37 1.08 6.80 15 19 N -0.29 -8.17 12.23 -52.18 -0.64 -8.81 15 20 N -0.06 -1.29 13.47 37.02 0.50 -0.79 15 21 N -0.20 -3.37 7.90 37.02 0.29 -3.07 15 22 H 0.49 2.86 8.96 -347.54 -3.12 -0.26 15 23 N -0.26 -6.07 9.26 -52.13 -0.48 -6.56 15 24 C -0.12 -4.07 9.62 22.63 0.22 -3.85 15 25 H 0.28 14.58 8.29 -92.71 -0.77 13.81 15 26 H 0.41 14.78 8.79 -92.71 -0.82 13.97 15 27 H 0.12 5.61 6.41 -2.91 -0.02 5.60 15 28 H 0.16 4.30 8.06 -2.91 -0.02 4.27 15 29 H 0.15 4.66 7.88 -2.91 -0.02 4.64 15 Total: -1.00 -71.44 287.12 0.30 -71.15 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: -2.67 Total: 19.67 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: 3.32 Total: 3.65 kcal Atomic # 7 Polarization: -95.16 SS G_CDS: -1.71 Total: -96.87 kcal Atomic # 8 Polarization: -37.19 SS G_CDS: -0.06 Total: -37.25 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 2.03 Total: 40.55 kcal Atomic # 35 Polarization: -0.28 SS G_CDS: -0.62 Total: -0.90 kcal Total: -71.44 0.30 -71.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592671931.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.696 kcal (2) G-P(sol) polarization free energy of solvation -71.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds