Wall clock time and date at job start Sat Apr 11 2020 04:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31362 * 1 3 3 Si 1.86796 * 119.99774 * 2 1 4 4 H 1.48501 * 109.47345 * 239.99963 * 3 2 1 5 5 H 1.48502 * 109.47503 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47330 * 119.99992 * 3 2 1 7 7 C 1.39059 * 120.00311 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00155 * 180.02562 * 7 2 1 9 9 N 1.36850 * 119.99515 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99352 * 180.02562 * 9 7 2 11 11 O 1.21627 * 120.00389 * 359.97438 * 10 9 7 12 12 C 1.47468 * 119.99760 * 180.27879 * 10 9 7 13 13 C 1.39617 * 120.20421 * 308.07257 * 12 10 9 14 14 C 1.37858 * 119.97299 * 180.02562 * 13 12 10 15 15 C 1.38649 * 120.39214 * 359.97438 * 14 13 12 16 16 Br 1.89102 * 119.78863 * 179.97438 * 15 14 13 17 17 C 1.38173 * 120.42007 * 0.02610 * 15 14 13 18 18 C 1.39109 * 120.01592 * 359.67038 * 17 15 14 19 19 C 1.48267 * 120.19328 * 180.30323 * 18 17 15 20 20 N 1.34113 * 126.68082 * 173.84859 * 19 18 17 21 21 N 1.28989 * 107.25686 * 179.83714 * 20 19 18 22 22 N 1.28723 * 108.96466 * 0.42608 * 21 20 19 23 23 H 0.97001 * 125.32883 * 179.75079 * 22 21 20 24 24 N 1.28868 * 109.33761 * 359.72964 * 22 21 20 25 25 H 0.96997 * 120.00149 * 0.02562 * 1 2 3 26 26 H 0.96992 * 120.00229 * 359.97438 * 9 7 2 27 27 H 1.07994 * 120.01425 * 0.02811 * 13 12 10 28 28 H 1.08001 * 119.80760 * 180.02562 * 14 13 12 29 29 H 1.07999 * 119.99052 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 3.1013 1.6965 -1.2125 5 1 1.2826 2.7465 0.0006 6 1 3.1013 1.6965 1.2125 7 6 2.0090 -1.2042 -0.0005 8 1 3.0890 -1.2042 -0.0001 9 7 1.3247 -2.3894 -0.0005 10 6 1.9987 -3.5565 -0.0005 11 8 3.2149 -3.5565 -0.0010 12 6 1.2614 -4.8337 -0.0068 13 6 0.2618 -5.0723 0.9384 14 6 -0.4240 -6.2681 0.9285 15 6 -0.1281 -7.2387 -0.0163 16 35 -1.0791 -8.8732 -0.0137 17 6 0.8580 -7.0197 -0.9591 18 6 1.5565 -5.8167 -0.9689 19 6 2.6107 -5.5749 -1.9830 20 7 3.2805 -4.4307 -2.1852 21 7 4.1080 -4.6375 -3.1528 22 7 3.9761 -5.8501 -3.5641 23 1 4.4809 -6.2555 -4.2864 24 7 3.0686 -6.4413 -2.8657 25 1 -0.4850 0.8400 -0.0004 26 1 0.3548 -2.3894 0.0002 27 1 0.0260 -4.3204 1.6768 28 1 -1.1970 -6.4497 1.6606 29 1 1.0831 -7.7807 -1.6917 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592678819.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:52:57 Heat of formation + Delta-G solvation = 130.412301 kcal Electronic energy + Delta-G solvation = -20274.243615 eV Core-core repulsion = 16861.375356 eV Total energy + Delta-G solvation = -3412.868259 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 336.991 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.02252 -39.51866 -37.44539 -34.26009 -33.75768 -33.32489 -32.26218 -31.15598 -30.48770 -29.31043 -25.35977 -24.47197 -24.11460 -22.58757 -21.43087 -19.71183 -18.71670 -18.02075 -16.88413 -16.71254 -15.95277 -15.40344 -14.85118 -14.36049 -14.04133 -13.83439 -13.55266 -13.29150 -12.87553 -12.71070 -11.89686 -11.64056 -11.49735 -11.42271 -11.24766 -11.08261 -10.84014 -10.53027 -10.44986 -10.36981 -10.34970 -10.23064 -9.46357 -8.82738 -8.52038 -8.33590 -7.97362 -6.47887 -3.80202 0.72557 1.12185 1.56140 1.58009 2.54567 2.65580 3.20185 3.25578 3.30535 3.59571 3.96676 4.07451 4.18297 4.54617 4.76607 4.92976 5.02843 5.28575 5.47466 5.50379 5.67202 5.83467 5.92212 5.97056 6.16281 6.38977 6.52583 6.69596 6.74335 7.51558 8.01747 8.57059 8.60808 9.14165 9.48192 10.03814 10.68986 Molecular weight = 336.99amu Principal moments of inertia in cm(-1) A = 0.013896 B = 0.004049 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.520111 B = 6914.158576 C = 8635.454170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.022 3.978 3 Si 0.932 3.068 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.285 4.285 8 H 0.108 0.892 9 N -0.541 5.541 10 C 0.468 3.532 11 O -0.557 6.557 12 C -0.035 4.035 13 C -0.097 4.097 14 C -0.073 4.073 15 C -0.099 4.099 16 Br -0.055 7.055 17 C -0.056 4.056 18 C 0.015 3.985 19 C 0.211 3.789 20 N -0.192 5.192 21 N -0.062 5.062 22 N -0.241 5.241 23 H 0.469 0.531 24 N -0.303 5.303 25 H 0.274 0.726 26 H 0.393 0.607 27 H 0.145 0.855 28 H 0.138 0.862 29 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.200 -16.808 -2.598 17.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.180 4.180 3 Si 0.759 3.241 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.414 4.414 8 H 0.126 0.874 9 N -0.175 5.175 10 C 0.254 3.746 11 O -0.440 6.440 12 C -0.042 4.042 13 C -0.117 4.117 14 C -0.094 4.094 15 C -0.179 4.179 16 Br 0.031 6.969 17 C -0.078 4.078 18 C 0.009 3.991 19 C -0.069 4.069 20 N -0.065 5.065 21 N -0.058 5.058 22 N -0.085 5.085 23 H 0.322 0.678 24 N -0.156 5.156 25 H 0.084 0.916 26 H 0.226 0.774 27 H 0.163 0.837 28 H 0.156 0.844 29 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.404 -16.827 -2.917 17.246 hybrid contribution 0.007 0.584 -0.283 0.649 sum -2.397 -16.243 -3.200 16.728 Atomic orbital electron populations 1.69585 1.06053 1.28596 1.49069 1.25333 0.95636 0.99901 0.97165 0.85887 0.78809 0.80146 0.79271 1.19700 1.20962 1.19753 1.19750 0.93670 0.81898 1.46114 0.87429 1.41790 1.09203 1.04402 1.62114 1.17367 0.87685 0.82706 0.86829 1.90683 1.12364 1.86146 1.54792 1.20619 0.94274 0.95993 0.93289 1.21366 0.94387 0.97199 0.98772 1.21149 0.99017 0.92262 0.96962 1.21558 1.00907 0.93979 1.01438 1.96670 1.74200 1.27295 1.98765 1.20916 0.93463 0.95965 0.97443 1.17024 0.94280 0.94466 0.93324 1.23379 0.99354 0.87313 0.96815 1.76867 1.02857 1.20900 1.05905 1.79080 1.18731 0.99635 1.08346 1.47711 1.25786 1.08314 1.26691 0.67817 1.74781 1.06975 1.25579 1.08289 0.91581 0.77370 0.83688 0.84402 0.84048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.65 13.05 55.50 0.72 -22.92 15 2 C 0.02 0.59 5.50 -17.45 -0.10 0.49 15 3 Si 0.93 20.74 29.55 -169.99 -5.02 15.72 15 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 15 5 H -0.28 -6.17 7.11 56.52 0.40 -5.76 15 6 H -0.27 -6.00 7.11 56.52 0.40 -5.60 15 7 C -0.28 -7.77 9.68 -15.01 -0.15 -7.91 15 8 H 0.11 3.09 7.15 -52.49 -0.38 2.71 15 9 N -0.54 -13.55 5.24 -11.95 -0.06 -13.61 15 10 C 0.47 11.19 6.10 -12.50 -0.08 11.12 15 11 O -0.56 -15.13 13.95 5.25 0.07 -15.05 15 12 C -0.04 -0.68 5.68 -104.70 -0.59 -1.27 15 13 C -0.10 -1.52 9.65 -39.21 -0.38 -1.90 15 14 C -0.07 -0.95 9.76 -39.57 -0.39 -1.34 15 15 C -0.10 -1.31 6.23 -39.45 -0.25 -1.56 15 16 Br -0.05 -0.60 33.68 -68.01 -2.29 -2.89 15 17 C -0.06 -0.81 9.42 -39.28 -0.37 -1.18 15 18 C 0.01 0.26 5.90 -104.53 -0.62 -0.36 15 19 C 0.21 4.03 7.67 -156.27 -1.20 2.83 15 20 N -0.19 -4.20 8.81 32.13 0.28 -3.92 15 21 N -0.06 -1.12 13.47 60.35 0.81 -0.31 15 22 N -0.24 -3.26 7.90 60.35 0.48 -2.78 15 23 H 0.47 3.60 8.96 -340.36 -3.05 0.55 15 24 N -0.30 -4.74 12.10 32.15 0.39 -4.35 15 25 H 0.27 6.89 8.31 -40.82 -0.34 6.55 15 26 H 0.39 9.43 7.78 -40.82 -0.32 9.12 15 27 H 0.15 2.11 8.06 -52.49 -0.42 1.68 15 28 H 0.14 1.41 8.06 -52.49 -0.42 0.99 15 29 H 0.14 1.83 7.89 -52.49 -0.41 1.42 15 LS Contribution 290.86 15.07 4.38 4.38 Total: -1.00 -32.35 290.86 -8.48 -40.83 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -4.14 Total: 5.98 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -4.11 Total: -1.08 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: 2.62 Total: -47.89 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: 0.07 Total: -15.05 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 35 Polarization: -0.60 SS G_CDS: -2.29 Total: -2.89 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.35 -8.48 -40.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592678819.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.242 kcal (2) G-P(sol) polarization free energy of solvation -32.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds