Wall clock time and date at job start Sat Apr 11 2020 04:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31362 * 1 3 3 Si 1.86796 * 119.99774 * 2 1 4 4 H 1.48501 * 109.47345 * 239.99963 * 3 2 1 5 5 H 1.48502 * 109.47503 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47330 * 119.99992 * 3 2 1 7 7 C 1.39059 * 120.00311 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00155 * 180.02562 * 7 2 1 9 9 N 1.36850 * 119.99515 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99352 * 180.02562 * 9 7 2 11 11 O 1.21627 * 120.00389 * 359.97438 * 10 9 7 12 12 C 1.47468 * 119.99760 * 180.27879 * 10 9 7 13 13 C 1.39617 * 120.20421 * 308.07257 * 12 10 9 14 14 C 1.37858 * 119.97299 * 180.02562 * 13 12 10 15 15 C 1.38649 * 120.39214 * 359.97438 * 14 13 12 16 16 Br 1.89102 * 119.78863 * 179.97438 * 15 14 13 17 17 C 1.38173 * 120.42007 * 0.02610 * 15 14 13 18 18 C 1.39109 * 120.01592 * 359.67038 * 17 15 14 19 19 C 1.48267 * 120.19328 * 180.30323 * 18 17 15 20 20 N 1.34113 * 126.68082 * 173.84859 * 19 18 17 21 21 N 1.28989 * 107.25686 * 179.83714 * 20 19 18 22 22 N 1.28723 * 108.96466 * 0.42608 * 21 20 19 23 23 H 0.97001 * 125.32883 * 179.75079 * 22 21 20 24 24 N 1.28868 * 109.33761 * 359.72964 * 22 21 20 25 25 H 0.96997 * 120.00149 * 0.02562 * 1 2 3 26 26 H 0.96992 * 120.00229 * 359.97438 * 9 7 2 27 27 H 1.07994 * 120.01425 * 0.02811 * 13 12 10 28 28 H 1.08001 * 119.80760 * 180.02562 * 14 13 12 29 29 H 1.07999 * 119.99052 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 3.1013 1.6965 -1.2125 5 1 1.2826 2.7465 0.0006 6 1 3.1013 1.6965 1.2125 7 6 2.0090 -1.2042 -0.0005 8 1 3.0890 -1.2042 -0.0001 9 7 1.3247 -2.3894 -0.0005 10 6 1.9987 -3.5565 -0.0005 11 8 3.2149 -3.5565 -0.0010 12 6 1.2614 -4.8337 -0.0068 13 6 0.2618 -5.0723 0.9384 14 6 -0.4240 -6.2681 0.9285 15 6 -0.1281 -7.2387 -0.0163 16 35 -1.0791 -8.8732 -0.0137 17 6 0.8580 -7.0197 -0.9591 18 6 1.5565 -5.8167 -0.9689 19 6 2.6107 -5.5749 -1.9830 20 7 3.2805 -4.4307 -2.1852 21 7 4.1080 -4.6375 -3.1528 22 7 3.9761 -5.8501 -3.5641 23 1 4.4809 -6.2555 -4.2864 24 7 3.0686 -6.4413 -2.8657 25 1 -0.4850 0.8400 -0.0004 26 1 0.3548 -2.3894 0.0002 27 1 0.0260 -4.3204 1.6768 28 1 -1.1970 -6.4497 1.6606 29 1 1.0831 -7.7807 -1.6917 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592678819.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:52:56 Heat of formation + Delta-G solvation = 107.151726 kcal Electronic energy + Delta-G solvation = -20275.252270 eV Core-core repulsion = 16861.375356 eV Total energy + Delta-G solvation = -3413.876913 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 336.991 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -45.37884 -40.96139 -39.12400 -36.01056 -35.31846 -34.67147 -33.65152 -32.92424 -31.74737 -30.53550 -27.16455 -25.80114 -25.57163 -24.00270 -22.76259 -21.29597 -20.17294 -19.82733 -18.41589 -18.06434 -17.34387 -16.83022 -16.54240 -15.91035 -15.73268 -15.19501 -14.95691 -14.70371 -14.45981 -14.29118 -13.49632 -13.26258 -12.90264 -12.81743 -12.64130 -12.49073 -12.38020 -12.20886 -12.10645 -11.95663 -11.57024 -11.34570 -11.31303 -10.36368 -10.00393 -9.94132 -9.67919 -8.44322 -5.87468 -0.55603 -0.09742 0.23831 0.48202 1.28294 1.42997 1.43765 1.47693 1.54457 2.05993 2.31322 2.56592 2.65846 3.10795 3.21511 3.30158 3.78218 3.91120 4.16741 4.20455 4.25686 4.40792 4.55407 4.76097 4.94653 5.02199 5.22887 5.45773 5.52347 5.68521 6.02593 6.62609 7.15751 7.22552 7.56154 8.14768 8.72893 Molecular weight = 336.99amu Principal moments of inertia in cm(-1) A = 0.013896 B = 0.004049 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.520111 B = 6914.158576 C = 8635.454170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.011 4.011 3 Si 0.990 3.010 4 H -0.275 1.275 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.319 4.319 8 H 0.080 0.920 9 N -0.553 5.553 10 C 0.478 3.522 11 O -0.594 6.594 12 C -0.068 4.068 13 C -0.092 4.092 14 C -0.057 4.057 15 C -0.089 4.089 16 Br -0.020 7.020 17 C -0.048 4.048 18 C 0.002 3.998 19 C 0.192 3.808 20 N -0.253 5.253 21 N -0.077 5.077 22 N -0.202 5.202 23 H 0.493 0.507 24 N -0.282 5.282 25 H 0.278 0.722 26 H 0.395 0.605 27 H 0.152 0.848 28 H 0.176 0.824 29 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.509 -19.111 -2.661 19.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.211 4.211 3 Si 0.814 3.186 4 H -0.201 1.201 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.449 4.449 8 H 0.098 0.902 9 N -0.189 5.189 10 C 0.265 3.735 11 O -0.478 6.478 12 C -0.074 4.074 13 C -0.112 4.112 14 C -0.077 4.077 15 C -0.169 4.169 16 Br 0.065 6.935 17 C -0.070 4.070 18 C -0.003 4.003 19 C -0.088 4.088 20 N -0.125 5.125 21 N -0.072 5.072 22 N -0.052 5.052 23 H 0.352 0.648 24 N -0.136 5.136 25 H 0.088 0.912 26 H 0.229 0.771 27 H 0.169 0.831 28 H 0.193 0.807 29 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -3.718 -19.156 -2.996 19.742 hybrid contribution 0.397 0.925 -0.335 1.061 sum -3.321 -18.231 -3.331 18.828 Atomic orbital electron populations 1.69640 1.06781 1.29412 1.49780 1.26011 0.96494 1.02217 0.96368 0.85034 0.77836 0.76825 0.78936 1.20095 1.19404 1.19467 1.19602 0.92770 0.83613 1.48936 0.90154 1.41743 1.09096 1.04359 1.63666 1.18042 0.87465 0.83886 0.84060 1.90633 1.14455 1.87238 1.55505 1.20304 0.96534 0.94336 0.96244 1.21457 0.93315 0.98545 0.97844 1.21487 0.98592 0.90616 0.97030 1.21847 0.99831 0.95136 1.00119 1.96733 1.73160 1.24921 1.98654 1.21066 0.93049 0.94900 0.98017 1.17195 0.94688 0.95311 0.93145 1.23699 1.00039 0.87159 0.97894 1.76833 1.04718 1.23126 1.07788 1.78979 1.18721 1.01161 1.08382 1.47770 1.24375 1.07138 1.25924 0.64811 1.74739 1.06756 1.24577 1.07532 0.91205 0.77114 0.83068 0.80700 0.82195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.42 13.05 21.68 0.28 -49.14 15 2 C -0.01 -0.57 5.50 84.96 0.47 -0.11 15 3 Si 0.99 43.49 29.55 68.60 2.03 45.52 15 4 H -0.28 -12.16 7.11 99.48 0.71 -11.46 15 5 H -0.27 -11.09 7.11 99.48 0.71 -10.39 15 6 H -0.27 -11.62 7.11 99.48 0.71 -10.91 15 7 C -0.32 -18.36 9.68 84.11 0.81 -17.54 15 8 H 0.08 4.95 7.15 -2.91 -0.02 4.92 15 9 N -0.55 -29.11 5.24 -309.95 -1.63 -30.73 15 10 C 0.48 23.93 6.10 86.68 0.53 24.46 15 11 O -0.59 -34.03 13.95 -4.12 -0.06 -34.09 15 12 C -0.07 -2.65 5.68 -19.91 -0.11 -2.76 15 13 C -0.09 -2.76 9.65 22.51 0.22 -2.54 15 14 C -0.06 -1.30 9.76 22.28 0.22 -1.08 15 15 C -0.09 -2.06 6.23 22.35 0.14 -1.92 15 16 Br -0.02 -0.37 33.68 -20.37 -0.69 -1.05 15 17 C -0.05 -1.30 9.42 22.46 0.21 -1.08 15 18 C 0.00 0.06 5.90 -19.80 -0.12 -0.05 15 19 C 0.19 7.34 7.67 137.28 1.05 8.39 15 20 N -0.25 -11.42 8.81 -52.25 -0.46 -11.88 15 21 N -0.08 -2.83 13.47 37.02 0.50 -2.33 15 22 N -0.20 -5.22 7.90 37.02 0.29 -4.93 15 23 H 0.49 6.58 8.96 -347.53 -3.12 3.46 15 24 N -0.28 -8.45 12.10 -52.20 -0.63 -9.08 15 25 H 0.28 14.08 8.31 -92.71 -0.77 13.31 15 26 H 0.39 19.83 7.78 -92.71 -0.72 19.11 15 27 H 0.15 4.29 8.06 -2.91 -0.02 4.27 15 28 H 0.18 2.73 8.06 -2.91 -0.02 2.71 15 29 H 0.16 3.64 7.89 -2.91 -0.02 3.62 15 Total: -1.00 -73.80 290.86 0.48 -73.32 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: -2.58 Total: 18.65 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: 3.42 Total: 5.76 kcal Atomic # 7 Polarization: -106.45 SS G_CDS: -1.64 Total: -108.10 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -0.06 Total: -34.09 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 35 Polarization: -0.37 SS G_CDS: -0.69 Total: -1.05 kcal Total: -73.80 0.48 -73.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592678819.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.469 kcal (2) G-P(sol) polarization free energy of solvation -73.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds