Wall clock time and date at job start Sat Apr 11 2020 04:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46730 * 2 1 4 4 H 1.09002 * 109.47314 * 305.53910 * 3 2 1 5 5 C 1.50704 * 109.46776 * 185.53825 * 3 2 1 6 6 H 1.07997 * 119.99930 * 244.98070 * 5 3 2 7 7 C 1.37878 * 119.99606 * 64.98809 * 5 3 2 8 8 N 1.31518 * 119.99453 * 195.72119 * 7 5 3 9 9 Si 1.86800 * 120.00371 * 15.71866 * 7 5 3 10 10 H 1.48503 * 109.46919 * 89.55272 * 9 7 5 11 11 H 1.48498 * 109.46915 * 209.55305 * 9 7 5 12 12 H 1.48500 * 109.46980 * 329.55467 * 9 7 5 13 13 N 1.46504 * 109.47200 * 65.53942 * 3 2 1 14 14 S 1.65596 * 119.99988 * 216.05921 * 13 3 2 15 15 O 1.42098 * 106.40038 * 177.43774 * 14 13 3 16 16 O 1.42093 * 106.40671 * 310.36301 * 14 13 3 17 17 C 1.76207 * 107.21484 * 63.89839 * 14 13 3 18 18 C 1.34096 * 125.39902 * 94.70450 * 17 14 13 19 19 C 1.47120 * 105.97349 * 179.97438 * 18 17 14 20 20 C 1.47056 * 127.21736 * 179.97438 * 19 18 17 21 21 O 1.21558 * 119.99526 * 180.02562 * 20 19 18 22 22 O 1.34798 * 119.99942 * 0.02562 * 20 19 18 23 23 C 1.36747 * 105.56313 * 0.02562 * 19 18 17 24 24 Cl 1.73602 * 125.82959 * 179.97438 * 23 19 18 25 25 O 1.33658 * 108.33096 * 359.76848 * 23 19 18 26 26 H 1.09006 * 109.47114 * 174.94747 * 1 2 3 27 27 H 1.08998 * 109.47310 * 54.94902 * 1 2 3 28 28 H 1.08999 * 109.47571 * 294.94914 * 1 2 3 29 29 H 1.09001 * 109.46936 * 119.99307 * 2 1 3 30 30 H 1.08998 * 109.47289 * 240.00144 * 2 1 3 31 31 H 0.96995 * 119.99669 * 180.02562 * 8 7 5 32 32 H 0.96998 * 119.99734 * 36.06820 * 13 3 2 33 33 H 1.08010 * 127.01392 * 359.92658 * 18 17 14 34 34 H 0.96695 * 116.99704 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5978 1.9842 -0.8362 5 6 3.5407 1.4448 -0.1371 6 1 4.1561 1.8137 0.6700 7 6 4.1280 0.9760 -1.2932 8 7 5.4106 0.6858 -1.3081 9 14 3.1018 0.7530 -2.8381 10 1 3.1139 2.0116 -3.6262 11 1 3.6709 -0.3484 -3.6555 12 1 1.7051 0.4188 -2.4606 13 7 1.6634 2.0936 1.2573 14 16 1.2414 3.6949 1.2665 15 8 0.8772 4.0061 2.6043 16 8 2.2633 4.3834 0.5590 17 6 -0.2248 3.8533 0.3020 18 6 -1.4761 3.8470 0.7840 19 6 -2.3597 4.0064 -0.3814 20 6 -3.8292 4.0603 -0.3827 21 8 -4.4315 4.1961 -1.4299 22 8 -4.5084 3.9590 0.7772 23 6 -1.5279 4.0929 -1.4634 24 17 -2.0257 4.2902 -3.1148 25 8 -0.2660 4.0042 -1.0317 26 1 -0.3634 -1.0237 -0.0905 27 1 -0.3634 0.5902 -0.8413 28 1 -0.3634 0.4335 0.9317 29 1 1.8933 -0.5137 0.8901 30 1 1.8934 -0.5138 -0.8900 31 1 5.8239 0.3563 -2.1214 32 1 1.6616 1.5867 2.0843 33 1 -1.7745 3.7448 1.8170 34 1 -5.4731 3.9994 0.7260 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595030002.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:53:04 Heat of formation + Delta-G solvation = -139.932575 kcal Electronic energy + Delta-G solvation = -25600.371529 eV Core-core repulsion = 21461.066372 eV Total energy + Delta-G solvation = -4139.305158 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 337.031 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.06708 -40.20660 -37.55344 -37.09015 -36.38678 -36.37763 -35.61362 -33.61255 -32.29193 -31.21982 -30.41804 -27.31444 -25.26419 -22.88416 -22.83567 -21.56906 -20.65586 -19.50272 -18.79435 -18.15176 -17.66635 -17.05834 -16.94990 -16.50838 -16.16062 -15.73372 -15.59819 -14.83420 -14.20488 -14.09399 -13.84004 -13.62911 -13.38291 -12.86996 -12.63587 -12.46715 -12.17565 -12.06984 -11.92671 -11.91627 -11.81758 -11.64788 -11.32827 -11.11665 -11.02617 -10.93137 -10.76584 -10.53563 -10.19964 -9.98962 -9.56502 -9.44320 -8.74363 -8.41349 -6.20153 -4.16291 0.27642 0.45467 0.64814 1.02845 2.51858 2.54021 2.98839 3.20386 3.26493 3.33904 3.35992 3.82603 4.19636 4.31534 4.44035 4.69301 4.83622 5.05674 5.17411 5.49225 5.67615 5.71050 5.83109 6.02419 6.06648 6.10837 6.31572 6.41774 6.55181 6.90472 7.07764 7.46332 7.51723 7.61275 8.37761 8.90875 9.42295 10.92756 Molecular weight = 337.03amu Principal moments of inertia in cm(-1) A = 0.013288 B = 0.005115 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.677310 B = 5472.546716 C = 6354.319007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.131 4.131 3 C 0.253 3.747 4 H 0.035 0.965 5 C -0.532 4.532 6 H 0.085 0.915 7 C 0.084 3.916 8 N -0.882 5.882 9 Si 0.847 3.153 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.252 1.252 13 N -1.078 6.078 14 S 2.704 3.296 15 O -0.951 6.951 16 O -0.911 6.911 17 C -0.542 4.542 18 C -0.041 4.041 19 C -0.224 4.224 20 C 0.561 3.439 21 O -0.502 6.502 22 O -0.505 6.505 23 C 0.147 3.853 24 Cl 0.077 6.923 25 O -0.097 6.097 26 H 0.046 0.954 27 H 0.042 0.958 28 H 0.048 0.952 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.266 0.734 32 H 0.415 0.585 33 H 0.191 0.809 34 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.197 3.817 2.789 18.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.170 4.170 3 C 0.148 3.852 4 H 0.053 0.947 5 C -0.571 4.571 6 H 0.103 0.897 7 C -0.120 4.120 8 N -0.518 5.518 9 Si 0.673 3.327 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.176 1.176 13 N -0.842 5.842 14 S 2.781 3.219 15 O -0.941 6.941 16 O -0.901 6.901 17 C -0.666 4.666 18 C -0.061 4.061 19 C -0.228 4.228 20 C 0.405 3.595 21 O -0.391 6.391 22 O -0.317 6.317 23 C 0.064 3.936 24 Cl 0.106 6.894 25 O 0.009 5.991 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.251 0.749 33 H 0.208 0.792 34 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -17.195 4.597 2.265 17.943 hybrid contribution -1.871 -0.582 -1.250 2.324 sum -19.066 4.016 1.015 19.511 Atomic orbital electron populations 1.21900 0.98126 1.00580 1.00708 1.22231 0.93024 0.98972 1.02793 1.18970 0.96696 0.89872 0.79670 0.94721 1.21182 0.88683 1.43403 1.03802 0.89690 1.24812 0.94771 0.94066 0.98351 1.69940 1.11281 1.42424 1.28148 0.87458 0.82000 0.78657 0.84606 1.19815 1.20899 1.17612 1.55309 1.81012 1.30070 1.17807 1.02475 0.72625 0.74057 0.72736 1.93618 1.84284 1.83843 1.32331 1.93677 1.50767 1.71672 1.73961 1.36820 1.21887 1.19529 0.88403 1.23006 0.89236 0.93699 1.00203 1.19985 0.91489 1.18967 0.92385 1.19218 0.86416 0.72553 0.81284 1.90970 1.69779 1.45740 1.32605 1.84561 1.26887 1.85267 1.34958 1.23365 0.84033 0.96658 0.89593 1.98518 1.86785 1.94393 1.09654 1.84045 1.25373 1.68235 1.21412 0.93517 0.93885 0.93268 0.91443 0.91080 0.92380 0.74941 0.79185 0.72283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 9.75 37.16 0.36 -2.00 16 2 C -0.13 -2.41 4.83 -26.73 -0.13 -2.54 16 3 C 0.25 5.29 1.71 -69.08 -0.12 5.17 16 4 H 0.04 0.75 6.45 -51.93 -0.34 0.41 16 5 C -0.53 -13.87 9.27 -34.44 -0.32 -14.19 16 6 H 0.09 2.43 8.06 -52.49 -0.42 2.00 16 7 C 0.08 2.29 5.32 -17.82 -0.09 2.20 16 8 N -0.88 -25.63 13.96 55.43 0.77 -24.86 16 9 Si 0.85 19.83 25.81 -169.99 -4.39 15.45 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.25 -5.33 5.52 56.52 0.31 -5.02 16 13 N -1.08 -18.60 5.02 -5.87 -0.03 -18.63 16 14 S 2.70 46.24 5.80 -107.50 -0.62 45.62 16 15 O -0.95 -15.88 17.78 -57.17 -1.02 -16.90 16 16 O -0.91 -19.52 17.80 -57.18 -1.02 -20.54 16 17 C -0.54 -8.33 7.09 29.27 0.21 -8.13 16 18 C -0.04 -0.52 10.69 -37.44 -0.40 -0.92 16 19 C -0.22 -2.97 6.32 -103.26 -0.65 -3.62 16 20 C 0.56 6.55 8.32 34.31 0.29 6.84 16 21 O -0.50 -6.72 16.44 -19.31 -0.32 -7.04 16 22 O -0.50 -4.12 13.34 -40.76 -0.54 -4.67 16 23 C 0.15 2.15 7.99 30.19 0.24 2.39 16 24 Cl 0.08 1.01 27.91 -51.86 -1.45 -0.44 16 25 O -0.10 -1.60 10.52 7.45 0.08 -1.52 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.64 7.91 -51.93 -0.41 0.23 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.07 1.42 5.01 -51.93 -0.26 1.16 16 31 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.42 5.91 8.85 -34.47 -0.30 5.60 16 33 H 0.19 1.86 8.06 -52.48 -0.42 1.43 16 34 H 0.42 1.32 9.11 45.56 0.42 1.74 16 LS Contribution 331.60 15.07 5.00 5.00 Total: -1.00 -33.55 331.60 -6.39 -39.93 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -2.23 Total: 3.40 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -0.62 Total: -14.79 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: 0.74 Total: -43.49 kcal Atomic # 8 Polarization: -47.85 SS G_CDS: -2.82 Total: -50.67 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -4.39 Total: 15.45 kcal Atomic # 16 Polarization: 46.24 SS G_CDS: -0.62 Total: 45.62 kcal Atomic # 17 Polarization: 1.01 SS G_CDS: -1.45 Total: -0.44 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.55 -6.39 -39.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030002.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.001 kcal (2) G-P(sol) polarization free energy of solvation -33.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds