Wall clock time and date at job start Sat Apr 11 2020 04:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46730 * 2 1 4 4 H 1.09002 * 109.47314 * 305.53910 * 3 2 1 5 5 C 1.50704 * 109.46776 * 185.53825 * 3 2 1 6 6 H 1.07997 * 119.99930 * 244.98070 * 5 3 2 7 7 C 1.37878 * 119.99606 * 64.98809 * 5 3 2 8 8 N 1.31518 * 119.99453 * 195.72119 * 7 5 3 9 9 Si 1.86800 * 120.00371 * 15.71866 * 7 5 3 10 10 H 1.48503 * 109.46919 * 89.55272 * 9 7 5 11 11 H 1.48498 * 109.46915 * 209.55305 * 9 7 5 12 12 H 1.48500 * 109.46980 * 329.55467 * 9 7 5 13 13 N 1.46504 * 109.47200 * 65.53942 * 3 2 1 14 14 S 1.65596 * 119.99988 * 216.05921 * 13 3 2 15 15 O 1.42098 * 106.40038 * 177.43774 * 14 13 3 16 16 O 1.42093 * 106.40671 * 310.36301 * 14 13 3 17 17 C 1.76207 * 107.21484 * 63.89839 * 14 13 3 18 18 C 1.34096 * 125.39902 * 94.70450 * 17 14 13 19 19 C 1.47120 * 105.97349 * 179.97438 * 18 17 14 20 20 C 1.47056 * 127.21736 * 179.97438 * 19 18 17 21 21 O 1.21558 * 119.99526 * 180.02562 * 20 19 18 22 22 O 1.34798 * 119.99942 * 0.02562 * 20 19 18 23 23 C 1.36747 * 105.56313 * 0.02562 * 19 18 17 24 24 Cl 1.73602 * 125.82959 * 179.97438 * 23 19 18 25 25 O 1.33658 * 108.33096 * 359.76848 * 23 19 18 26 26 H 1.09006 * 109.47114 * 174.94747 * 1 2 3 27 27 H 1.08998 * 109.47310 * 54.94902 * 1 2 3 28 28 H 1.08999 * 109.47571 * 294.94914 * 1 2 3 29 29 H 1.09001 * 109.46936 * 119.99307 * 2 1 3 30 30 H 1.08998 * 109.47289 * 240.00144 * 2 1 3 31 31 H 0.96995 * 119.99669 * 180.02562 * 8 7 5 32 32 H 0.96998 * 119.99734 * 36.06820 * 13 3 2 33 33 H 1.08010 * 127.01392 * 359.92658 * 18 17 14 34 34 H 0.96695 * 116.99704 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5978 1.9842 -0.8362 5 6 3.5407 1.4448 -0.1371 6 1 4.1561 1.8137 0.6700 7 6 4.1280 0.9760 -1.2932 8 7 5.4106 0.6858 -1.3081 9 14 3.1018 0.7530 -2.8381 10 1 3.1139 2.0116 -3.6262 11 1 3.6709 -0.3484 -3.6555 12 1 1.7051 0.4188 -2.4606 13 7 1.6634 2.0936 1.2573 14 16 1.2414 3.6949 1.2665 15 8 0.8772 4.0061 2.6043 16 8 2.2633 4.3834 0.5590 17 6 -0.2248 3.8533 0.3020 18 6 -1.4761 3.8470 0.7840 19 6 -2.3597 4.0064 -0.3814 20 6 -3.8292 4.0603 -0.3827 21 8 -4.4315 4.1961 -1.4299 22 8 -4.5084 3.9590 0.7772 23 6 -1.5279 4.0929 -1.4634 24 17 -2.0257 4.2902 -3.1148 25 8 -0.2660 4.0042 -1.0317 26 1 -0.3634 -1.0237 -0.0905 27 1 -0.3634 0.5902 -0.8413 28 1 -0.3634 0.4335 0.9317 29 1 1.8933 -0.5137 0.8901 30 1 1.8934 -0.5138 -0.8900 31 1 5.8239 0.3563 -2.1214 32 1 1.6616 1.5867 2.0843 33 1 -1.7745 3.7448 1.8170 34 1 -5.4731 3.9994 0.7260 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595030002.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:53:03 Heat of formation + Delta-G solvation = -167.941953 kcal Electronic energy + Delta-G solvation = -25601.586107 eV Core-core repulsion = 21461.066372 eV Total energy + Delta-G solvation = -4140.519735 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 337.031 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.17340 -41.04167 -38.58048 -38.53174 -37.94052 -37.14736 -37.09612 -34.68479 -34.29044 -32.59016 -31.51195 -29.07327 -26.21381 -24.54513 -23.96153 -22.63390 -22.18641 -20.63053 -19.99555 -19.21226 -19.00699 -18.60816 -18.11756 -17.85717 -17.40457 -16.98574 -16.58691 -16.47705 -15.68969 -15.13795 -15.07567 -14.95479 -14.62589 -14.24978 -14.09914 -13.67237 -13.65437 -13.42382 -13.27372 -13.20484 -13.18120 -12.77238 -12.67812 -12.63718 -12.54848 -12.25377 -11.94439 -11.79060 -11.68280 -11.58224 -11.25576 -10.65686 -10.56472 -10.18084 -8.28852 -6.27588 -1.00831 -0.61905 -0.45490 -0.01540 1.32890 1.40968 1.43847 1.62188 1.65290 1.86535 2.08724 2.34714 2.49337 3.05178 3.14359 3.39926 3.62983 3.65037 4.23772 4.32291 4.36142 4.45153 4.53144 4.64588 4.91689 5.02762 5.13503 5.22836 5.41623 5.43642 5.54721 5.66056 6.22853 6.38280 6.76923 6.85294 7.34207 8.88148 Molecular weight = 337.03amu Principal moments of inertia in cm(-1) A = 0.013288 B = 0.005115 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.677310 B = 5472.546716 C = 6354.319007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.130 4.130 3 C 0.256 3.744 4 H 0.035 0.965 5 C -0.533 4.533 6 H 0.044 0.956 7 C 0.028 3.972 8 N -0.935 5.935 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.281 1.281 12 H -0.213 1.213 13 N -1.077 6.077 14 S 2.728 3.272 15 O -0.946 6.946 16 O -0.966 6.966 17 C -0.566 4.566 18 C -0.010 4.010 19 C -0.223 4.223 20 C 0.569 3.431 21 O -0.522 6.522 22 O -0.492 6.492 23 C 0.136 3.864 24 Cl 0.085 6.915 25 O -0.121 6.121 26 H 0.067 0.933 27 H 0.039 0.961 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.266 0.734 32 H 0.429 0.571 33 H 0.225 0.775 34 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.073 3.329 3.419 22.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.169 4.169 3 C 0.150 3.850 4 H 0.053 0.947 5 C -0.573 4.573 6 H 0.062 0.938 7 C -0.172 4.172 8 N -0.574 5.574 9 Si 0.720 3.280 10 H -0.207 1.207 11 H -0.207 1.207 12 H -0.135 1.135 13 N -0.841 5.841 14 S 2.809 3.191 15 O -0.936 6.936 16 O -0.955 6.955 17 C -0.693 4.693 18 C -0.030 4.030 19 C -0.227 4.227 20 C 0.413 3.587 21 O -0.413 6.413 22 O -0.306 6.306 23 C 0.053 3.947 24 Cl 0.114 6.886 25 O -0.016 6.016 26 H 0.086 0.914 27 H 0.058 0.942 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.267 0.733 33 H 0.242 0.758 34 H 0.305 0.695 Dipole moment (debyes) X Y Z Total from point charges -21.094 4.094 2.968 21.691 hybrid contribution -0.749 -0.339 -1.329 1.563 sum -21.842 3.755 1.639 22.223 Atomic orbital electron populations 1.21867 0.94910 1.02222 1.01913 1.22106 0.95860 0.96431 1.02529 1.18760 0.93192 0.91982 0.81113 0.94733 1.21539 0.91638 1.41699 1.02380 0.93816 1.25599 0.95743 0.94238 1.01573 1.70081 1.13422 1.44883 1.28990 0.86633 0.82689 0.78177 0.80483 1.20692 1.20651 1.13503 1.55055 1.81579 1.30054 1.17439 1.01328 0.72260 0.73216 0.72318 1.93615 1.84368 1.83629 1.31990 1.93620 1.53939 1.72877 1.75115 1.36126 1.21823 1.22873 0.88520 1.23451 0.87791 0.90288 1.01489 1.20244 0.92557 1.18014 0.91889 1.18945 0.85789 0.72164 0.81755 1.90975 1.69976 1.46740 1.33612 1.84505 1.28942 1.84318 1.32860 1.23676 0.83742 0.96826 0.90479 1.98519 1.86529 1.94323 1.09203 1.83997 1.26571 1.69207 1.21861 0.91381 0.94158 0.90970 0.90711 0.92589 0.92496 0.73347 0.75819 0.69502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.99 9.75 71.98 0.70 -3.29 16 2 C -0.13 -4.51 4.83 30.60 0.15 -4.36 16 3 C 0.26 10.50 1.71 44.25 0.08 10.58 16 4 H 0.03 1.45 6.45 -2.39 -0.02 1.43 16 5 C -0.53 -28.61 9.27 25.60 0.24 -28.37 16 6 H 0.04 2.64 8.06 -2.91 -0.02 2.61 16 7 C 0.03 1.55 5.32 84.65 0.45 2.00 16 8 N -0.93 -56.65 13.96 21.45 0.30 -56.35 16 9 Si 0.90 41.00 25.81 68.60 1.77 42.77 16 10 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 12 H -0.21 -8.31 5.52 99.48 0.55 -7.76 16 13 N -1.08 -36.06 5.02 -172.50 -0.87 -36.92 16 14 S 2.73 90.99 5.80 -56.49 -0.33 90.66 16 15 O -0.95 -29.80 17.78 -128.00 -2.28 -32.08 16 16 O -0.97 -42.39 17.80 -127.99 -2.28 -44.67 16 17 C -0.57 -16.24 7.09 66.88 0.47 -15.76 16 18 C -0.01 -0.21 10.69 23.66 0.25 0.04 16 19 C -0.22 -5.17 6.32 -18.98 -0.12 -5.29 16 20 C 0.57 11.21 8.32 70.13 0.58 11.80 16 21 O -0.52 -12.47 16.44 19.65 0.32 -12.14 16 22 O -0.49 -5.76 13.34 -57.10 -0.76 -6.52 16 23 C 0.14 3.70 7.99 67.47 0.54 4.24 16 24 Cl 0.08 2.08 27.91 -2.72 -0.08 2.00 16 25 O -0.12 -3.84 10.52 3.76 0.04 -3.80 16 26 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 27 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.07 1.56 7.91 -2.39 -0.02 1.54 16 29 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.06 2.11 5.01 -2.39 -0.01 2.10 16 31 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 32 H 0.43 11.55 8.85 -96.75 -0.86 10.70 16 33 H 0.23 3.20 8.06 -2.91 -0.02 3.17 16 34 H 0.44 0.75 9.11 -74.06 -0.67 0.07 16 Total: -1.00 -75.27 331.60 -1.30 -76.57 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -0.49 Total: 8.89 kcal Atomic # 6 Polarization: -31.76 SS G_CDS: 3.34 Total: -28.42 kcal Atomic # 7 Polarization: -92.70 SS G_CDS: -0.57 Total: -93.27 kcal Atomic # 8 Polarization: -94.26 SS G_CDS: -4.95 Total: -99.21 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 1.77 Total: 42.77 kcal Atomic # 16 Polarization: 90.99 SS G_CDS: -0.33 Total: 90.66 kcal Atomic # 17 Polarization: 2.08 SS G_CDS: -0.08 Total: 2.00 kcal Total: -75.27 -1.30 -76.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030002.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.374 kcal (2) G-P(sol) polarization free energy of solvation -75.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds