Wall clock time and date at job start Sat Apr 11 2020 04:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46899 * 109.46772 * 2 1 4 4 C 1.47440 * 111.00432 * 70.50821 * 3 2 1 5 5 C 1.54316 * 107.23508 * 123.25635 * 4 3 2 6 6 C 1.55134 * 103.01859 * 22.28396 * 5 4 3 7 7 C 1.47846 * 110.99869 * 191.35447 * 3 2 1 8 8 H 1.09001 * 110.37045 * 332.56833 * 7 3 2 9 9 C 1.52994 * 110.37617 * 94.80294 * 7 3 2 10 10 N 1.46499 * 109.47351 * 300.03030 * 9 7 3 11 11 N 1.40581 * 127.38365 * 290.65136 * 10 9 7 12 12 N 1.28909 * 106.81436 * 180.26218 * 11 10 9 13 13 N 1.28415 * 110.31834 * 359.76600 * 12 11 10 14 14 C 1.31474 * 110.51037 * 359.97438 * 13 12 11 15 15 N 1.38376 * 126.44200 * 179.97438 * 14 13 12 16 16 C 1.46903 * 111.00330 * 246.01596 * 15 14 13 17 17 C 1.50700 * 109.47107 * 200.14521 * 16 15 14 18 18 H 1.08001 * 120.00043 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99951 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00437 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 120.00030 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47384 * 89.99804 * 21 19 17 23 23 H 1.48496 * 109.47404 * 210.00590 * 21 19 17 24 24 H 1.48506 * 109.47117 * 330.00133 * 21 19 17 25 25 C 1.46900 * 111.00025 * 9.97391 * 15 14 13 26 26 C 1.52999 * 109.46952 * 73.75126 * 25 15 14 27 27 C 1.52996 * 109.47643 * 66.69405 * 26 25 15 28 28 C 1.53002 * 109.47107 * 186.69642 * 26 25 15 29 29 H 1.09001 * 109.47194 * 305.47004 * 1 2 3 30 30 H 1.08997 * 109.47230 * 65.47145 * 1 2 3 31 31 H 1.09003 * 109.46764 * 185.47213 * 1 2 3 32 32 H 1.08997 * 109.47366 * 239.99595 * 2 1 3 33 33 H 1.09003 * 109.46932 * 119.99704 * 2 1 3 34 34 H 1.09001 * 109.89041 * 242.66253 * 4 3 2 35 35 H 1.09002 * 109.88897 * 3.85068 * 4 3 2 36 36 H 1.09003 * 110.70798 * 140.66668 * 5 4 3 37 37 H 1.09004 * 110.70741 * 263.72965 * 5 4 3 38 38 H 1.09002 * 110.99244 * 206.25511 * 6 5 4 39 39 H 1.09001 * 110.99394 * 82.43973 * 6 5 4 40 40 H 1.09008 * 109.46810 * 180.02562 * 9 7 3 41 41 H 1.09000 * 109.47442 * 60.03719 * 9 7 3 42 42 H 1.09000 * 109.46966 * 320.14174 * 16 15 14 43 43 H 1.08996 * 109.46834 * 80.14052 * 16 15 14 44 44 H 0.96997 * 120.00379 * 180.02562 * 20 19 17 45 45 H 1.09000 * 109.46965 * 193.74388 * 25 15 14 46 46 H 1.09000 * 109.47066 * 313.74740 * 25 15 14 47 47 H 1.09005 * 109.47135 * 306.68907 * 26 25 15 48 48 H 1.09000 * 109.47094 * 184.99446 * 27 26 25 49 49 H 1.09001 * 109.47151 * 304.99557 * 27 26 25 50 50 H 1.08999 * 109.46904 * 64.99712 * 27 26 25 51 51 H 1.09010 * 109.47086 * 59.99219 * 28 26 25 52 52 H 1.08993 * 109.47513 * 179.97438 * 28 26 25 53 53 H 1.09004 * 109.46982 * 300.00259 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7627 2.0363 1.2975 5 6 3.1211 2.5303 1.8381 6 6 3.9896 2.6357 0.5569 7 6 3.4721 1.4335 -0.2717 8 1 3.9504 0.5106 0.0561 9 6 3.7277 1.6645 -1.7624 10 7 3.1332 0.5710 -2.5351 11 7 3.5550 -0.7692 -2.5813 12 7 2.7571 -1.3837 -3.3860 13 7 1.8755 -0.5715 -3.8464 14 6 2.0585 0.6341 -3.3549 15 7 1.2993 1.7578 -3.6298 16 6 2.0893 2.7630 -4.3534 17 6 1.4384 4.1143 -4.2067 18 1 0.5291 4.2163 -3.6330 19 6 2.0038 5.2203 -4.8050 20 7 1.4362 6.3997 -4.6767 21 14 3.5770 5.0440 -5.7967 22 1 3.2392 4.7585 -7.2143 23 1 4.3559 6.3058 -5.7179 24 1 4.3867 3.9274 -5.2463 25 6 0.0860 1.4032 -4.3782 26 6 -0.9109 0.7204 -3.4396 27 6 -1.4023 1.7270 -2.3976 28 6 -2.1012 0.2024 -4.2494 29 1 -0.3633 0.5963 0.8369 30 1 -0.3633 0.4266 -0.9349 31 1 -0.3633 -1.0230 0.0980 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.0884 2.8818 1.1610 35 1 1.3258 1.3191 1.9924 36 1 3.0153 3.5056 2.3132 37 1 3.5444 1.8073 2.5354 38 1 5.0478 2.5212 0.7920 39 1 3.8062 3.5760 0.0371 40 1 4.8017 1.6973 -1.9460 41 1 3.2784 2.6101 -2.0659 42 1 3.0975 2.7986 -3.9407 43 1 2.1380 2.4957 -5.4090 44 1 1.8338 7.1777 -5.0978 45 1 -0.3636 2.3066 -4.7906 46 1 0.3454 0.7234 -5.1898 47 1 -0.4229 -0.1145 -2.9365 48 1 -2.0430 1.2198 -1.6763 49 1 -0.5468 2.1620 -1.8808 50 1 -1.9672 2.5165 -2.8933 51 1 -1.7511 -0.5149 -4.9919 52 1 -2.8112 -0.2845 -3.5809 53 1 -2.5892 1.0372 -4.7526 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650041995.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:54:06 Heat of formation + Delta-G solvation = 130.815295 kcal Electronic energy + Delta-G solvation = -32898.214701 eV Core-core repulsion = 29035.966573 eV Total energy + Delta-G solvation = -3862.248128 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.233 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.49554 -39.31429 -37.96014 -35.12748 -34.00565 -33.34848 -32.73045 -30.79411 -30.21836 -28.72137 -28.04098 -26.68628 -26.03554 -25.31101 -23.16084 -22.32737 -22.16725 -20.87440 -20.71212 -20.02261 -19.52759 -17.32095 -16.72154 -16.63347 -16.11582 -15.65164 -15.39584 -14.98400 -14.62016 -14.19921 -14.13541 -13.82867 -13.63182 -13.44992 -13.17453 -13.08763 -12.65934 -12.57471 -12.39982 -12.18230 -12.02105 -11.95650 -11.74625 -11.56425 -11.37540 -11.27240 -11.24185 -11.22213 -11.14928 -10.97028 -10.82558 -10.69900 -10.53462 -10.44760 -10.27014 -10.25131 -10.05052 -9.92020 -9.75770 -9.48417 -8.79460 -8.25045 -7.94784 -6.26359 -4.27149 1.57560 2.24404 2.83649 3.12237 3.19140 3.23019 3.82768 4.09701 4.21180 4.49531 4.55548 4.77267 4.87815 5.01280 5.07443 5.11821 5.18927 5.20427 5.27883 5.35662 5.41610 5.42771 5.55659 5.59811 5.64313 5.65520 5.76175 5.78822 5.85773 5.87803 5.98176 5.98432 6.04596 6.06570 6.10009 6.15434 6.15822 6.22512 6.28929 6.35485 6.41639 6.45912 6.51385 6.55823 6.58136 6.81304 6.98363 7.00973 7.13985 7.23385 7.29548 7.64830 8.33523 8.83920 9.05647 9.31802 10.85466 Molecular weight = 336.23amu Principal moments of inertia in cm(-1) A = 0.008595 B = 0.005986 C = 0.004941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3257.065703 B = 4676.848790 C = 5665.800435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.051 3.949 3 N -0.509 5.509 4 C 0.045 3.955 5 C -0.139 4.139 6 C -0.121 4.121 7 C 0.062 3.938 8 H 0.062 0.938 9 C 0.136 3.864 10 N -0.379 5.379 11 N -0.116 5.116 12 N -0.042 5.042 13 N -0.378 5.378 14 C 0.451 3.549 15 N -0.427 5.427 16 C 0.167 3.833 17 C -0.514 4.514 18 H 0.091 0.909 19 C 0.080 3.920 20 N -0.886 5.886 21 Si 0.865 3.135 22 H -0.274 1.274 23 H -0.281 1.281 24 H -0.270 1.270 25 C 0.073 3.927 26 C -0.089 4.089 27 C -0.142 4.142 28 C -0.142 4.142 29 H 0.052 0.948 30 H 0.085 0.915 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.025 0.975 34 H 0.082 0.918 35 H 0.052 0.948 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.129 0.871 42 H 0.029 0.971 43 H 0.006 0.994 44 H 0.267 0.733 45 H 0.101 0.899 46 H 0.054 0.946 47 H 0.068 0.932 48 H 0.039 0.961 49 H 0.077 0.923 50 H 0.051 0.949 51 H 0.053 0.947 52 H 0.050 0.950 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.687 -7.798 10.211 12.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.077 4.077 3 N -0.234 5.234 4 C -0.082 4.082 5 C -0.177 4.177 6 C -0.160 4.160 7 C -0.047 4.047 8 H 0.080 0.920 9 C 0.013 3.987 10 N -0.177 5.177 11 N -0.104 5.104 12 N -0.038 5.038 13 N -0.239 5.239 14 C 0.086 3.914 15 N -0.150 5.150 16 C 0.043 3.957 17 C -0.552 4.552 18 H 0.109 0.891 19 C -0.124 4.124 20 N -0.524 5.524 21 Si 0.691 3.309 22 H -0.199 1.199 23 H -0.207 1.207 24 H -0.195 1.195 25 C -0.054 4.054 26 C -0.108 4.108 27 C -0.199 4.199 28 C -0.200 4.200 29 H 0.071 0.929 30 H 0.104 0.896 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.043 0.957 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.111 0.889 41 H 0.147 0.853 42 H 0.047 0.953 43 H 0.024 0.976 44 H 0.077 0.923 45 H 0.119 0.881 46 H 0.072 0.928 47 H 0.086 0.914 48 H 0.058 0.942 49 H 0.096 0.904 50 H 0.070 0.930 51 H 0.072 0.928 52 H 0.069 0.931 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.593 -8.412 10.055 13.123 hybrid contribution 1.537 0.245 -0.242 1.575 sum 2.130 -8.167 9.813 12.943 Atomic orbital electron populations 1.22067 0.94644 1.00977 1.04139 1.22243 0.96608 0.88718 1.00109 1.63436 1.13067 1.16364 1.30522 1.22836 0.97113 0.99178 0.89121 1.22748 0.95829 1.01835 0.97302 1.22696 0.99339 0.98430 0.95500 1.22828 0.89384 0.98780 0.93744 0.91966 1.22194 0.98868 0.87981 0.89627 1.51114 1.23373 1.09240 1.33977 1.82350 1.20917 0.85917 1.21221 1.77747 0.98944 1.22990 1.04140 1.74866 1.23420 0.99333 1.26261 1.23554 0.85513 0.93443 0.88929 1.58720 1.05429 1.03741 1.47086 1.20495 0.93054 0.90815 0.91381 1.20803 1.12318 0.88252 1.33811 0.89073 1.24776 0.96755 0.95147 0.95721 1.69849 1.39669 0.99074 1.43809 0.87045 0.84333 0.77979 0.81496 1.19917 1.20703 1.19505 1.22272 0.87695 1.01116 0.94308 1.21086 0.95199 0.98065 0.96433 1.21857 1.01495 0.98431 0.98144 1.21766 0.97627 1.00787 0.99831 0.92868 0.89605 0.93168 0.91397 0.95697 0.90000 0.92989 0.90439 0.91838 0.90553 0.89353 0.88942 0.85300 0.95295 0.97599 0.92284 0.88060 0.92811 0.91386 0.94188 0.90390 0.92955 0.92818 0.93102 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 10.01 37.16 0.37 -1.77 16 2 C 0.05 0.73 5.12 -3.82 -0.02 0.71 16 3 N -0.51 -6.93 4.73 -223.38 -1.06 -7.98 16 4 C 0.05 0.52 6.13 -2.84 -0.02 0.50 16 5 C -0.14 -1.34 6.94 -24.91 -0.17 -1.51 16 6 C -0.12 -1.27 6.49 -24.59 -0.16 -1.43 16 7 C 0.06 0.80 2.77 -66.19 -0.18 0.61 16 8 H 0.06 0.82 7.81 -51.93 -0.41 0.41 16 9 C 0.14 2.02 5.64 -4.05 -0.02 2.00 16 10 N -0.38 -6.54 2.36 -61.86 -0.15 -6.68 16 11 N -0.12 -2.10 12.87 60.35 0.78 -1.33 16 12 N -0.04 -0.81 13.38 60.35 0.81 0.00 16 13 N -0.38 -7.33 10.27 30.10 0.31 -7.02 16 14 C 0.45 8.42 6.05 -320.42 -1.94 6.48 16 15 N -0.43 -8.13 3.75 -176.22 -0.66 -8.80 16 16 C 0.17 3.60 3.25 -4.97 -0.02 3.58 16 17 C -0.51 -12.71 9.09 -34.44 -0.31 -13.02 16 18 H 0.09 2.47 8.06 -52.49 -0.42 2.05 16 19 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 20 N -0.89 -24.61 13.96 55.43 0.77 -23.84 16 21 Si 0.86 19.57 27.47 -169.99 -4.67 14.90 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.27 -5.89 6.54 56.52 0.37 -5.52 16 25 C 0.07 1.30 3.88 -3.82 -0.01 1.28 16 26 C -0.09 -1.38 2.74 -90.62 -0.25 -1.62 16 27 C -0.14 -2.17 7.30 37.16 0.27 -1.90 16 28 C -0.14 -1.89 9.19 37.16 0.34 -1.55 16 29 H 0.05 0.65 7.08 -51.93 -0.37 0.28 16 30 H 0.09 1.26 3.43 -51.93 -0.18 1.09 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 1.12 5.30 -51.93 -0.28 0.84 16 33 H 0.02 0.33 7.94 -51.93 -0.41 -0.08 16 34 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.05 0.56 6.98 -51.93 -0.36 0.20 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.09 1.00 8.04 -51.93 -0.42 0.59 16 40 H 0.09 1.19 8.14 -51.92 -0.42 0.77 16 41 H 0.13 2.16 6.17 -51.93 -0.32 1.84 16 42 H 0.03 0.63 4.96 -51.93 -0.26 0.37 16 43 H 0.01 0.14 7.42 -51.93 -0.39 -0.25 16 44 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 45 H 0.10 1.92 7.34 -51.93 -0.38 1.53 16 46 H 0.05 0.97 7.45 -51.93 -0.39 0.59 16 47 H 0.07 1.15 6.13 -51.93 -0.32 0.83 16 48 H 0.04 0.54 7.66 -51.93 -0.40 0.14 16 49 H 0.08 1.35 7.15 -51.93 -0.37 0.98 16 50 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 51 H 0.05 0.71 8.14 -51.92 -0.42 0.28 16 52 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 53 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 398.27 15.07 6.00 6.00 Total: -1.00 -27.19 398.27 -9.14 -36.33 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -9.05 Total: 4.11 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -2.22 Total: -5.69 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: 0.80 Total: -55.65 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -4.67 Total: 14.90 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -27.19 -9.14 -36.33 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650041995.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.146 kcal (2) G-P(sol) polarization free energy of solvation -27.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds