Wall clock time and date at job start Sat Apr 11 2020 04:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46899 * 109.46772 * 2 1 4 4 C 1.47440 * 111.00432 * 70.50821 * 3 2 1 5 5 C 1.54316 * 107.23508 * 123.25635 * 4 3 2 6 6 C 1.55134 * 103.01859 * 22.28396 * 5 4 3 7 7 C 1.47846 * 110.99869 * 191.35447 * 3 2 1 8 8 H 1.09001 * 110.37045 * 332.56833 * 7 3 2 9 9 C 1.52994 * 110.37617 * 94.80294 * 7 3 2 10 10 N 1.46499 * 109.47351 * 300.03030 * 9 7 3 11 11 N 1.40581 * 127.38365 * 290.65136 * 10 9 7 12 12 N 1.28909 * 106.81436 * 180.26218 * 11 10 9 13 13 N 1.28415 * 110.31834 * 359.76600 * 12 11 10 14 14 C 1.31474 * 110.51037 * 359.97438 * 13 12 11 15 15 N 1.38376 * 126.44200 * 179.97438 * 14 13 12 16 16 C 1.46903 * 111.00330 * 246.01596 * 15 14 13 17 17 C 1.50700 * 109.47107 * 200.14521 * 16 15 14 18 18 H 1.08001 * 120.00043 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99951 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00437 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 120.00030 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47384 * 89.99804 * 21 19 17 23 23 H 1.48496 * 109.47404 * 210.00590 * 21 19 17 24 24 H 1.48506 * 109.47117 * 330.00133 * 21 19 17 25 25 C 1.46900 * 111.00025 * 9.97391 * 15 14 13 26 26 C 1.52999 * 109.46952 * 73.75126 * 25 15 14 27 27 C 1.52996 * 109.47643 * 66.69405 * 26 25 15 28 28 C 1.53002 * 109.47107 * 186.69642 * 26 25 15 29 29 H 1.09001 * 109.47194 * 305.47004 * 1 2 3 30 30 H 1.08997 * 109.47230 * 65.47145 * 1 2 3 31 31 H 1.09003 * 109.46764 * 185.47213 * 1 2 3 32 32 H 1.08997 * 109.47366 * 239.99595 * 2 1 3 33 33 H 1.09003 * 109.46932 * 119.99704 * 2 1 3 34 34 H 1.09001 * 109.89041 * 242.66253 * 4 3 2 35 35 H 1.09002 * 109.88897 * 3.85068 * 4 3 2 36 36 H 1.09003 * 110.70798 * 140.66668 * 5 4 3 37 37 H 1.09004 * 110.70741 * 263.72965 * 5 4 3 38 38 H 1.09002 * 110.99244 * 206.25511 * 6 5 4 39 39 H 1.09001 * 110.99394 * 82.43973 * 6 5 4 40 40 H 1.09008 * 109.46810 * 180.02562 * 9 7 3 41 41 H 1.09000 * 109.47442 * 60.03719 * 9 7 3 42 42 H 1.09000 * 109.46966 * 320.14174 * 16 15 14 43 43 H 1.08996 * 109.46834 * 80.14052 * 16 15 14 44 44 H 0.96997 * 120.00379 * 180.02562 * 20 19 17 45 45 H 1.09000 * 109.46965 * 193.74388 * 25 15 14 46 46 H 1.09000 * 109.47066 * 313.74740 * 25 15 14 47 47 H 1.09005 * 109.47135 * 306.68907 * 26 25 15 48 48 H 1.09000 * 109.47094 * 184.99446 * 27 26 25 49 49 H 1.09001 * 109.47151 * 304.99557 * 27 26 25 50 50 H 1.08999 * 109.46904 * 64.99712 * 27 26 25 51 51 H 1.09010 * 109.47086 * 59.99219 * 28 26 25 52 52 H 1.08993 * 109.47513 * 179.97438 * 28 26 25 53 53 H 1.09004 * 109.46982 * 300.00259 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7627 2.0363 1.2975 5 6 3.1211 2.5303 1.8381 6 6 3.9896 2.6357 0.5569 7 6 3.4721 1.4335 -0.2717 8 1 3.9504 0.5106 0.0561 9 6 3.7277 1.6645 -1.7624 10 7 3.1332 0.5710 -2.5351 11 7 3.5550 -0.7692 -2.5813 12 7 2.7571 -1.3837 -3.3860 13 7 1.8755 -0.5715 -3.8464 14 6 2.0585 0.6341 -3.3549 15 7 1.2993 1.7578 -3.6298 16 6 2.0893 2.7630 -4.3534 17 6 1.4384 4.1143 -4.2067 18 1 0.5291 4.2163 -3.6330 19 6 2.0038 5.2203 -4.8050 20 7 1.4362 6.3997 -4.6767 21 14 3.5770 5.0440 -5.7967 22 1 3.2392 4.7585 -7.2143 23 1 4.3559 6.3058 -5.7179 24 1 4.3867 3.9274 -5.2463 25 6 0.0860 1.4032 -4.3782 26 6 -0.9109 0.7204 -3.4396 27 6 -1.4023 1.7270 -2.3976 28 6 -2.1012 0.2024 -4.2494 29 1 -0.3633 0.5963 0.8369 30 1 -0.3633 0.4266 -0.9349 31 1 -0.3633 -1.0230 0.0980 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.0884 2.8818 1.1610 35 1 1.3258 1.3191 1.9924 36 1 3.0153 3.5056 2.3132 37 1 3.5444 1.8073 2.5354 38 1 5.0478 2.5212 0.7920 39 1 3.8062 3.5760 0.0371 40 1 4.8017 1.6973 -1.9460 41 1 3.2784 2.6101 -2.0659 42 1 3.0975 2.7986 -3.9407 43 1 2.1380 2.4957 -5.4090 44 1 1.8338 7.1777 -5.0978 45 1 -0.3636 2.3066 -4.7906 46 1 0.3454 0.7234 -5.1898 47 1 -0.4229 -0.1145 -2.9365 48 1 -2.0430 1.2198 -1.6763 49 1 -0.5468 2.1620 -1.8808 50 1 -1.9672 2.5165 -2.8933 51 1 -1.7511 -0.5149 -4.9919 52 1 -2.8112 -0.2845 -3.5809 53 1 -2.5892 1.0372 -4.7526 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650041995.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:54:05 Heat of formation + Delta-G solvation = 116.179239 kcal Electronic energy + Delta-G solvation = -32898.849368 eV Core-core repulsion = 29035.966573 eV Total energy + Delta-G solvation = -3862.882795 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.233 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.96167 -40.31789 -39.46878 -36.46296 -35.42163 -34.60849 -34.35025 -32.35166 -31.37891 -29.85670 -29.63000 -27.87939 -27.21785 -26.82045 -24.43489 -23.88955 -23.45575 -22.29629 -21.75512 -21.09123 -20.87440 -19.13393 -18.10839 -17.93895 -17.28592 -17.13864 -16.66668 -16.46726 -16.18276 -15.53553 -15.29888 -15.24261 -14.79436 -14.56812 -14.50965 -14.36044 -14.07998 -14.05031 -13.68119 -13.58157 -13.24147 -13.11682 -13.06986 -12.86564 -12.82942 -12.73932 -12.57579 -12.35001 -12.23316 -12.09734 -12.05004 -11.90739 -11.85928 -11.71013 -11.63611 -11.58342 -11.55584 -11.50038 -11.22458 -11.09076 -10.80152 -9.51430 -9.25370 -8.28205 -6.32530 0.11365 0.85547 1.30731 1.33542 1.36597 1.41925 2.30277 2.58492 2.83823 3.03759 3.35716 3.57758 3.62851 3.73000 3.91568 3.97748 4.06088 4.13487 4.15708 4.22368 4.28923 4.31147 4.39064 4.43342 4.49686 4.51121 4.56894 4.59616 4.73176 4.73655 4.75503 4.81875 4.86277 4.90711 4.91576 4.97955 4.99631 5.05194 5.09198 5.11251 5.15209 5.23265 5.30403 5.33227 5.35889 5.36620 5.49892 5.68961 5.73894 6.00646 6.02845 6.13005 6.40387 6.76470 7.29234 7.57246 8.86789 Molecular weight = 336.23amu Principal moments of inertia in cm(-1) A = 0.008595 B = 0.005986 C = 0.004941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3257.065703 B = 4676.848790 C = 5665.800435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.057 3.943 3 N -0.528 5.528 4 C 0.044 3.956 5 C -0.130 4.130 6 C -0.116 4.116 7 C 0.067 3.933 8 H 0.064 0.936 9 C 0.128 3.872 10 N -0.368 5.368 11 N -0.108 5.108 12 N -0.055 5.055 13 N -0.385 5.385 14 C 0.444 3.556 15 N -0.426 5.426 16 C 0.177 3.823 17 C -0.504 4.504 18 H 0.058 0.942 19 C 0.032 3.968 20 N -0.931 5.931 21 Si 0.922 3.078 22 H -0.273 1.273 23 H -0.278 1.278 24 H -0.255 1.255 25 C 0.074 3.926 26 C -0.079 4.079 27 C -0.130 4.130 28 C -0.138 4.138 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.043 0.957 33 H 0.032 0.968 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.100 0.900 39 H 0.076 0.924 40 H 0.115 0.885 41 H 0.109 0.891 42 H 0.035 0.965 43 H 0.001 0.999 44 H 0.268 0.732 45 H 0.085 0.915 46 H 0.050 0.950 47 H 0.058 0.942 48 H 0.059 0.941 49 H 0.053 0.947 50 H 0.044 0.956 51 H 0.055 0.945 52 H 0.068 0.932 53 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.836 -8.779 11.242 14.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.071 4.071 3 N -0.253 5.253 4 C -0.083 4.083 5 C -0.168 4.168 6 C -0.154 4.154 7 C -0.043 4.043 8 H 0.082 0.918 9 C 0.006 3.994 10 N -0.167 5.167 11 N -0.095 5.095 12 N -0.051 5.051 13 N -0.246 5.246 14 C 0.078 3.922 15 N -0.149 5.149 16 C 0.052 3.948 17 C -0.542 4.542 18 H 0.076 0.924 19 C -0.168 4.168 20 N -0.570 5.570 21 Si 0.746 3.254 22 H -0.198 1.198 23 H -0.203 1.203 24 H -0.179 1.179 25 C -0.052 4.052 26 C -0.098 4.098 27 C -0.187 4.187 28 C -0.195 4.195 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.118 0.882 39 H 0.095 0.905 40 H 0.133 0.867 41 H 0.127 0.873 42 H 0.053 0.947 43 H 0.019 0.981 44 H 0.078 0.922 45 H 0.103 0.897 46 H 0.069 0.931 47 H 0.076 0.924 48 H 0.077 0.923 49 H 0.072 0.928 50 H 0.063 0.937 51 H 0.074 0.926 52 H 0.087 0.913 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.745 -9.413 11.103 14.661 hybrid contribution 1.128 0.535 -0.500 1.345 sum 2.873 -8.878 10.603 14.125 Atomic orbital electron populations 1.22016 0.94297 1.01447 1.03651 1.22132 0.96902 0.88909 0.99153 1.63379 1.13702 1.16162 1.32050 1.22835 0.98224 0.98817 0.88446 1.22723 0.94285 1.02787 0.97040 1.22702 1.00838 0.96659 0.95211 1.22813 0.89193 0.99884 0.92419 0.91796 1.22475 0.99817 0.86300 0.90796 1.51294 1.22687 1.09394 1.33305 1.82290 1.20528 0.86143 1.20586 1.77739 0.99326 1.23230 1.04825 1.74806 1.23663 0.99597 1.26521 1.23393 0.86167 0.93050 0.89569 1.58621 1.05469 1.03790 1.47020 1.20235 0.93269 0.89937 0.91357 1.20824 1.11057 0.89858 1.32455 0.92408 1.25456 0.99774 0.94736 0.96836 1.69974 1.41568 0.99988 1.45502 0.86115 0.80884 0.78460 0.79915 1.19840 1.20338 1.17861 1.22293 0.87741 1.00389 0.94805 1.20999 0.95336 0.97351 0.96099 1.21723 1.00658 0.98176 0.98184 1.21733 0.96883 1.01003 0.99911 0.91929 0.91155 0.92463 0.93857 0.94946 0.91210 0.92149 0.89310 0.90405 0.88184 0.90519 0.86659 0.87264 0.94674 0.98089 0.92215 0.89692 0.93127 0.92395 0.92253 0.92763 0.93670 0.92635 0.91337 0.92293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.03 10.01 71.98 0.72 -3.31 16 2 C 0.06 1.56 5.12 86.30 0.44 2.00 16 3 N -0.53 -13.87 4.73 -860.66 -4.07 -17.94 16 4 C 0.04 0.95 6.13 86.65 0.53 1.48 16 5 C -0.13 -2.18 6.94 31.77 0.22 -1.96 16 6 C -0.12 -2.16 6.49 31.98 0.21 -1.95 16 7 C 0.07 1.59 2.77 45.38 0.13 1.72 16 8 H 0.06 1.54 7.81 -2.39 -0.02 1.52 16 9 C 0.13 3.64 5.64 86.38 0.49 4.13 16 10 N -0.37 -12.39 2.36 -349.63 -0.83 -13.22 16 11 N -0.11 -3.77 12.87 37.02 0.48 -3.30 16 12 N -0.06 -2.09 13.38 37.02 0.50 -1.59 16 13 N -0.38 -14.76 10.27 -58.70 -0.60 -15.36 16 14 C 0.44 16.45 6.05 260.65 1.58 18.03 16 15 N -0.43 -16.43 3.75 -711.45 -2.67 -19.10 16 16 C 0.18 7.66 3.25 85.56 0.28 7.94 16 17 C -0.50 -25.49 9.09 25.60 0.23 -25.26 16 18 H 0.06 3.27 8.06 -2.91 -0.02 3.25 16 19 C 0.03 1.66 5.47 84.65 0.46 2.12 16 20 N -0.93 -52.78 13.96 21.45 0.30 -52.48 16 21 Si 0.92 40.01 27.47 68.60 1.88 41.90 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 23 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 24 H -0.25 -10.31 6.54 99.48 0.65 -9.66 16 25 C 0.07 2.69 3.88 86.30 0.34 3.03 16 26 C -0.08 -2.43 2.74 -10.79 -0.03 -2.46 16 27 C -0.13 -4.00 7.30 71.98 0.53 -3.47 16 28 C -0.14 -3.51 9.19 71.98 0.66 -2.85 16 29 H 0.06 1.46 7.08 -2.39 -0.02 1.44 16 30 H 0.07 2.04 3.43 -2.39 -0.01 2.03 16 31 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.04 1.39 5.30 -2.39 -0.01 1.38 16 33 H 0.03 0.82 7.94 -2.39 -0.02 0.80 16 34 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.06 1.19 6.98 -2.39 -0.02 1.18 16 36 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 38 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.08 1.63 8.04 -2.39 -0.02 1.62 16 40 H 0.12 2.73 8.14 -2.38 -0.02 2.71 16 41 H 0.11 3.61 6.17 -2.39 -0.01 3.60 16 42 H 0.04 1.49 4.96 -2.39 -0.01 1.48 16 43 H 0.00 0.06 7.42 -2.39 -0.02 0.04 16 44 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 45 H 0.08 3.33 7.34 -2.39 -0.02 3.31 16 46 H 0.05 1.85 7.45 -2.39 -0.02 1.83 16 47 H 0.06 1.94 6.13 -2.38 -0.01 1.92 16 48 H 0.06 1.57 7.66 -2.39 -0.02 1.55 16 49 H 0.05 1.93 7.15 -2.39 -0.02 1.91 16 50 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 51 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 52 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 53 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 Total: -1.00 -58.82 398.27 2.61 -56.22 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: 0.84 Total: 25.70 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: 6.78 Total: -0.82 kcal Atomic # 7 Polarization: -116.09 SS G_CDS: -6.89 Total: -122.99 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 1.88 Total: 41.90 kcal Total: -58.82 2.61 -56.22 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650041995.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.395 kcal (2) G-P(sol) polarization free energy of solvation -58.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds