Wall clock time and date at job start Sat Apr 11 2020 04:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38723 * 120.05884 * 359.72201 * 3 2 1 5 5 C 1.38145 * 119.94323 * 179.77076 * 4 3 2 6 6 C 1.38260 * 120.05692 * 0.50972 * 5 4 3 7 7 C 1.50706 * 119.94706 * 179.76915 * 6 5 4 8 8 H 1.08998 * 109.51044 * 159.87497 * 7 6 5 9 9 C 1.53297 * 109.51136 * 279.97761 * 7 6 5 10 10 N 1.47151 * 108.38311 * 172.22736 * 9 7 6 11 11 C 1.34770 * 120.98164 * 129.48693 * 10 9 7 12 12 O 1.21280 * 120.00240 * 359.97438 * 11 10 9 13 13 C 1.50705 * 120.00032 * 179.97438 * 11 10 9 14 14 S 1.81002 * 109.47042 * 180.02562 * 13 11 10 15 15 C 1.76199 * 99.99691 * 179.97438 * 14 13 11 16 16 H 1.07998 * 120.00069 * 0.02562 * 15 14 13 17 17 C 1.38800 * 119.99822 * 179.97438 * 15 14 13 18 18 N 1.31637 * 119.99679 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 120.00160 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47113 * 89.99734 * 19 17 15 21 21 H 1.48502 * 109.47190 * 209.99732 * 19 17 15 22 22 H 1.48502 * 109.46887 * 329.99651 * 19 17 15 23 23 C 1.47145 * 118.03254 * 309.45689 * 10 9 7 24 24 C 1.53297 * 108.38411 * 50.54297 * 23 10 9 25 25 O 1.42959 * 109.22360 * 307.69341 * 24 23 10 26 26 C 1.38268 * 120.10972 * 359.74026 * 6 5 4 27 27 C 1.38139 * 120.05510 * 0.02562 * 26 6 5 28 28 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47144 * 300.00205 * 1 2 3 30 30 H 1.08998 * 109.47043 * 59.99803 * 1 2 3 31 31 H 1.08001 * 120.02769 * 0.02562 * 4 3 2 32 32 H 1.08006 * 119.97076 * 180.25587 * 5 4 3 33 33 H 1.09004 * 109.67723 * 291.95042 * 9 7 6 34 34 H 1.09002 * 109.68155 * 52.46056 * 9 7 6 35 35 H 1.09000 * 109.46970 * 299.99443 * 13 11 10 36 36 H 1.08995 * 109.47175 * 60.00042 * 13 11 10 37 37 H 0.97005 * 119.99275 * 180.02562 * 18 17 15 38 38 H 1.09003 * 109.67738 * 170.26248 * 23 10 9 39 39 H 1.08997 * 109.68688 * 290.81324 * 23 10 9 40 40 H 1.08997 * 109.51251 * 67.62096 * 24 23 10 41 41 H 1.09007 * 109.51286 * 187.76702 * 24 23 10 42 42 H 1.08008 * 119.96969 * 180.02562 * 26 6 5 43 43 H 1.08005 * 120.02914 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2915 2.3751 -0.0058 5 6 1.9210 3.6048 -0.0010 6 6 3.3018 3.6758 -0.0011 7 6 3.9860 5.0186 -0.0011 8 1 5.0108 4.9050 0.3524 9 6 3.9954 5.5885 -1.4242 10 7 4.4959 6.9711 -1.3671 11 6 5.4867 7.3844 -2.1819 12 8 5.9797 6.6126 -2.9769 13 6 5.9820 8.8056 -2.1051 14 16 7.3046 9.0499 -3.3164 15 6 7.6841 10.7443 -3.0173 16 1 7.1423 11.2939 -2.2618 17 6 8.6803 11.3725 -3.7519 18 7 8.9642 12.6383 -3.5281 19 14 9.6179 10.4218 -5.0581 20 1 8.9192 10.5516 -6.3621 21 1 10.9934 10.9690 -5.1769 22 1 9.6866 8.9890 -4.6738 23 6 3.8822 7.8892 -0.3947 24 6 3.8783 7.2073 0.9783 25 8 3.2793 5.9146 0.8601 26 6 4.0560 2.5170 -0.0005 27 6 3.4313 1.2849 -0.0004 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.2129 2.3201 -0.0099 32 1 1.3341 4.5114 -0.0014 33 1 4.6490 4.9871 -2.0561 34 1 2.9836 5.5801 -1.8296 35 1 5.1607 9.4888 -2.3218 36 1 6.3646 9.0034 -1.1039 37 1 9.6601 13.0773 -4.0418 38 1 4.4609 8.8115 -0.3449 39 1 2.8590 8.1131 -0.6963 40 1 4.9027 7.1026 1.3356 41 1 3.3060 7.8107 1.6829 42 1 5.1345 2.5751 -0.0001 43 1 4.0208 0.3800 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870104788.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:54:53 Heat of formation + Delta-G solvation = -104.322635 kcal Electronic energy + Delta-G solvation = -25982.911732 eV Core-core repulsion = 22119.249776 eV Total energy + Delta-G solvation = -3863.661956 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.118 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.63948 -40.95297 -39.59101 -38.24071 -35.88572 -34.67433 -33.66431 -32.07341 -31.32581 -30.38818 -28.54724 -27.93017 -27.54635 -25.16116 -24.08863 -23.21050 -21.92053 -20.68729 -19.64938 -19.13433 -18.39940 -17.75095 -17.34825 -17.19232 -17.06219 -16.68129 -16.63611 -16.39097 -15.99364 -15.70841 -15.55332 -15.03611 -14.87254 -14.79579 -14.60657 -14.47993 -14.10337 -13.65900 -13.61342 -13.40649 -13.24402 -13.03069 -12.82853 -12.75685 -12.65553 -12.30153 -11.99504 -11.89121 -11.82476 -11.71325 -11.26973 -11.17680 -10.96924 -10.53500 -9.99148 -9.75248 -9.11968 -9.01397 -8.52019 -6.23234 0.29623 0.38126 0.94536 1.30803 1.43422 1.44163 1.51502 1.93097 2.24192 2.36127 2.54619 2.66325 2.81202 2.86291 3.44059 3.70460 3.78313 3.82366 3.90317 3.94621 4.06344 4.11735 4.23337 4.30018 4.31792 4.38379 4.40187 4.41548 4.47070 4.55034 4.65731 4.73301 4.74723 4.79316 4.89226 5.06958 5.19623 5.30674 5.36416 5.55767 5.70385 5.74714 6.08525 6.10766 6.11920 6.42033 6.93193 6.97319 8.60053 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.026640 B = 0.002158 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.807779 B =12973.612850 C =13649.172669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.335 6.335 3 C 0.120 3.880 4 C -0.212 4.212 5 C -0.053 4.053 6 C -0.132 4.132 7 C 0.136 3.864 8 H 0.068 0.932 9 C 0.092 3.908 10 N -0.612 5.612 11 C 0.536 3.464 12 O -0.559 6.559 13 C -0.106 4.106 14 S -0.177 6.177 15 C -0.527 4.527 16 H 0.065 0.935 17 C 0.047 3.953 18 N -0.915 5.915 19 Si 0.912 3.088 20 H -0.263 1.263 21 H -0.259 1.259 22 H -0.238 1.238 23 C 0.064 3.936 24 C 0.049 3.951 25 O -0.377 6.377 26 C -0.070 4.070 27 C -0.164 4.164 28 H 0.118 0.882 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.150 0.850 32 H 0.138 0.862 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.277 0.723 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.057 0.943 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.711 -21.611 12.317 31.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.249 6.249 3 C 0.075 3.925 4 C -0.230 4.230 5 C -0.072 4.072 6 C -0.133 4.133 7 C 0.078 3.922 8 H 0.086 0.914 9 C -0.030 4.030 10 N -0.347 5.347 11 C 0.324 3.676 12 O -0.438 6.438 13 C -0.257 4.257 14 S 0.050 5.950 15 C -0.675 4.675 16 H 0.083 0.917 17 C -0.159 4.159 18 N -0.553 5.553 19 Si 0.734 3.266 20 H -0.188 1.188 21 H -0.183 1.183 22 H -0.162 1.162 23 C -0.058 4.058 24 C -0.028 4.028 25 O -0.296 6.296 26 C -0.088 4.088 27 C -0.182 4.182 28 H 0.136 0.864 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.167 0.833 32 H 0.156 0.844 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.086 0.914 38 H 0.124 0.876 39 H 0.115 0.885 40 H 0.075 0.925 41 H 0.158 0.842 42 H 0.159 0.841 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -18.984 -22.821 11.212 31.731 hybrid contribution 0.114 1.418 0.144 1.430 sum -18.870 -21.402 11.356 30.710 Atomic orbital electron populations 1.23350 0.76420 1.05591 1.02312 1.86054 1.23517 1.26848 1.88512 1.19284 0.92689 0.84757 0.95774 1.21463 1.01220 0.91657 1.08685 1.20926 0.93654 0.97822 0.94753 1.19385 0.94379 0.92738 1.06791 1.20974 0.95163 0.87265 0.88838 0.91420 1.22312 1.00735 0.82041 0.97936 1.48143 1.36027 1.12607 1.37874 1.20085 0.78869 0.88788 0.79846 1.90682 1.58037 1.56422 1.38618 1.23271 1.01806 0.96497 1.04087 1.84772 1.45186 1.13945 1.51134 1.22432 1.24514 0.95059 1.25479 0.91685 1.25532 0.96617 0.95305 0.98432 1.70015 1.32104 1.11357 1.41781 0.85896 0.79306 0.81249 0.80101 1.18775 1.18327 1.16163 1.22800 1.00589 0.93577 0.88842 1.23175 0.99959 0.83783 0.95871 1.87961 1.51899 1.23479 1.66239 1.20968 1.00639 0.90692 0.96520 1.20569 0.91842 0.98869 1.06966 0.86375 0.91607 0.91751 0.83263 0.84394 0.89688 0.89739 0.86813 0.86648 0.91371 0.87565 0.88511 0.92470 0.84238 0.84118 0.84117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.26 16 2 O -0.34 -5.59 10.50 -92.48 -0.97 -6.56 16 3 C 0.12 2.16 6.69 22.50 0.15 2.32 16 4 C -0.21 -3.33 9.04 22.36 0.20 -3.13 16 5 C -0.05 -0.92 9.34 22.25 0.21 -0.72 16 6 C -0.13 -2.52 4.98 -19.85 -0.10 -2.62 16 7 C 0.14 2.73 2.98 29.95 0.09 2.82 16 8 H 0.07 1.42 8.00 -2.39 -0.02 1.40 16 9 C 0.09 2.16 5.91 86.35 0.51 2.67 16 10 N -0.61 -15.75 3.02 -817.36 -2.47 -18.22 16 11 C 0.54 18.82 7.73 87.66 0.68 19.50 16 12 O -0.56 -24.19 15.33 -3.03 -0.05 -24.23 16 13 C -0.11 -3.94 4.53 71.24 0.32 -3.62 16 14 S -0.18 -8.88 18.55 -56.49 -1.05 -9.93 16 15 C -0.53 -30.26 10.04 67.95 0.68 -29.58 16 16 H 0.06 3.91 8.03 -2.91 -0.02 3.88 16 17 C 0.05 2.72 5.50 84.86 0.47 3.18 16 18 N -0.91 -55.08 13.97 21.65 0.30 -54.78 16 19 Si 0.91 44.75 27.74 68.60 1.90 46.65 16 20 H -0.26 -12.62 7.11 99.48 0.71 -11.92 16 21 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 22 H -0.24 -11.67 6.74 99.48 0.67 -11.00 16 23 C 0.06 1.14 6.54 86.36 0.56 1.70 16 24 C 0.05 0.73 6.98 72.08 0.50 1.24 16 25 O -0.38 -7.05 9.70 -148.98 -1.44 -8.50 16 26 C -0.07 -1.28 9.66 22.25 0.22 -1.07 16 27 C -0.16 -2.97 9.99 22.36 0.22 -2.75 16 28 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.07 0.42 7.67 -2.39 -0.02 0.40 16 30 H 0.06 0.43 7.65 -2.39 -0.02 0.42 16 31 H 0.15 1.60 6.30 -2.91 -0.02 1.58 16 32 H 0.14 2.11 7.77 -2.91 -0.02 2.09 16 33 H 0.08 2.34 7.08 -2.38 -0.02 2.32 16 34 H 0.08 1.81 8.12 -2.39 -0.02 1.79 16 35 H 0.11 3.87 8.02 -2.40 -0.02 3.85 16 36 H 0.12 3.88 7.66 -2.40 -0.02 3.86 16 37 H 0.28 15.43 8.31 -92.70 -0.77 14.66 16 38 H 0.11 1.80 6.05 -2.39 -0.01 1.79 16 39 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.14 1.28 8.14 -2.38 -0.02 1.26 16 42 H 0.14 2.19 8.04 -2.91 -0.02 2.17 16 43 H 0.14 2.19 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -75.09 368.79 3.04 -72.05 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 0.98 Total: 12.30 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: 5.83 Total: -8.79 kcal Atomic # 7 Polarization: -70.83 SS G_CDS: -2.17 Total: -73.00 kcal Atomic # 8 Polarization: -36.83 SS G_CDS: -2.46 Total: -39.29 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.90 Total: 46.65 kcal Atomic # 16 Polarization: -8.88 SS G_CDS: -1.05 Total: -9.93 kcal Total: -75.09 3.04 -72.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870104788.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.270 kcal (2) G-P(sol) polarization free energy of solvation -75.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds