Wall clock time and date at job start Sat Apr 11 2020 04:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34237 * 116.99715 * 2 1 4 4 O 1.20817 * 120.00038 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99803 * 180.02562 * 3 2 1 6 6 C 1.52995 * 109.47033 * 179.97438 * 5 3 2 7 7 N 1.46497 * 109.47049 * 180.02562 * 6 5 3 8 8 C 1.36976 * 119.99814 * 264.84432 * 7 6 5 9 9 H 1.08001 * 119.99501 * 123.49971 * 8 7 6 10 10 C 1.38962 * 120.00451 * 303.50394 * 8 7 6 11 11 N 1.31418 * 120.00482 * 184.15801 * 10 8 7 12 12 Si 1.86799 * 120.00091 * 4.16021 * 10 8 7 13 13 H 1.48500 * 109.47426 * 94.71768 * 12 10 8 14 14 H 1.48506 * 109.47380 * 214.72158 * 12 10 8 15 15 H 1.48507 * 109.46776 * 334.71991 * 12 10 8 16 16 C 1.34774 * 120.00280 * 84.85010 * 7 6 5 17 17 O 1.21667 * 119.99879 * 2.35037 * 16 7 6 18 18 C 1.47113 * 120.00165 * 182.35357 * 16 7 6 19 19 C 1.35709 * 123.19945 * 350.92132 * 18 16 7 20 20 S 1.70269 * 110.83072 * 179.73959 * 19 18 16 21 21 C 1.75591 * 92.63484 * 0.28041 * 20 19 18 22 22 C 1.33996 * 110.61363 * 0.02562 * 21 20 19 23 23 C 1.52018 * 123.46246 * 179.97438 * 22 21 20 24 24 C 1.53042 * 108.75657 * 342.85089 * 23 22 21 25 25 C 1.53158 * 109.19718 * 50.67336 * 24 23 22 26 26 C 1.51617 * 125.03681 * 180.02562 * 21 20 19 27 27 H 1.08997 * 109.46757 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46906 * 299.99470 * 1 2 3 29 29 H 1.08996 * 109.47217 * 59.99741 * 1 2 3 30 30 H 1.09001 * 109.46818 * 59.99736 * 5 3 2 31 31 H 1.09000 * 109.47084 * 299.99895 * 5 3 2 32 32 H 1.09008 * 109.47263 * 59.99856 * 6 5 3 33 33 H 1.09000 * 109.47149 * 299.99916 * 6 5 3 34 34 H 0.96998 * 120.00407 * 180.02562 * 11 10 8 35 35 H 1.07997 * 124.58294 * 0.04790 * 19 18 16 36 36 H 1.09007 * 109.59205 * 102.63262 * 23 22 21 37 37 H 1.08998 * 109.59331 * 223.06909 * 23 22 21 38 38 H 1.09006 * 109.51703 * 170.58918 * 24 23 22 39 39 H 1.08997 * 109.51601 * 290.75161 * 24 23 22 40 40 H 1.09002 * 109.54648 * 49.49845 * 25 24 23 41 41 H 1.09009 * 109.53962 * 169.75452 * 25 24 23 42 42 H 1.09000 * 109.59386 * 43.64045 * 26 21 20 43 43 H 1.09002 * 109.59414 * 283.18373 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0001 2.7422 -0.0011 7 7 5.4630 2.8189 -0.0023 8 6 6.1423 2.9613 1.1786 9 1 6.8983 2.2419 1.4568 10 6 5.8587 4.0313 2.0187 11 7 6.5656 4.2143 3.1113 12 14 4.4726 5.2097 1.5950 13 1 3.2316 4.7851 2.2913 14 1 4.8391 6.5817 2.0291 15 1 4.2452 5.1990 0.1275 16 6 6.1406 2.7494 -1.1653 17 8 5.5357 2.6660 -2.2176 18 6 7.6115 2.7743 -1.1622 19 6 8.3479 3.0433 -0.0545 20 16 10.0130 2.9820 -0.4048 21 6 9.7262 2.5915 -2.0925 22 6 8.4119 2.5194 -2.3433 23 6 7.8363 2.1992 -3.7133 24 6 8.9268 2.4084 -4.7664 25 6 10.1910 1.6570 -4.3385 26 6 10.8087 2.3653 -3.1297 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 3.9557 0.7810 -0.8908 31 1 3.9564 0.7807 0.8892 32 1 3.6106 3.2365 0.8889 33 1 3.6100 3.2360 -0.8911 34 1 6.3674 4.9609 3.6979 35 1 7.9338 3.2614 0.9188 36 1 7.5009 1.1622 -3.7356 37 1 6.9960 2.8618 -3.9207 38 1 8.5833 2.0255 -5.7275 39 1 9.1479 3.4720 -4.8554 40 1 9.9327 0.6332 -4.0681 41 1 10.9063 1.6488 -5.1611 42 1 11.5975 1.7443 -2.7054 43 1 11.2229 3.3243 -3.4409 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871339573.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:55:10 Heat of formation + Delta-G solvation = -87.613280 kcal Electronic energy + Delta-G solvation = -27446.011531 eV Core-core repulsion = 23583.074147 eV Total energy + Delta-G solvation = -3862.937384 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.118 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.28549 -39.41283 -37.94692 -36.37453 -35.18076 -34.39542 -32.53059 -31.02886 -30.40868 -28.56439 -27.53833 -25.40286 -24.64802 -23.10022 -22.76154 -21.17573 -20.51513 -19.05436 -17.88916 -17.79624 -17.26622 -16.51115 -16.43129 -16.18753 -15.72242 -14.90265 -14.48978 -14.25284 -13.98761 -13.87557 -13.65311 -13.54510 -13.24426 -13.07287 -12.75829 -12.66705 -12.49689 -12.20249 -12.13090 -11.99650 -11.79253 -11.48375 -11.27537 -10.99754 -10.96941 -10.75384 -10.69044 -10.62855 -10.35735 -10.29544 -10.14859 -9.97135 -9.92876 -9.15744 -8.70579 -7.88660 -7.83847 -7.56187 -6.63700 -4.49753 1.67608 2.26263 2.45384 2.67974 2.74011 2.89585 3.07153 3.18179 3.26037 4.01200 4.29227 4.32282 4.70794 4.95848 5.06790 5.09545 5.11999 5.12647 5.18993 5.45180 5.45386 5.47626 5.53115 5.61049 5.74753 5.80149 5.92565 5.95408 5.97202 6.13179 6.17675 6.25815 6.29242 6.43357 6.47588 6.54176 6.58203 6.59210 6.74275 7.15170 7.19677 7.33257 7.89154 7.94721 7.98893 8.76163 9.13652 9.51869 10.39503 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.011547 B = 0.004312 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.260184 B = 6491.617448 C = 8182.175310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.467 3.533 4 O -0.511 6.511 5 C -0.125 4.125 6 C 0.121 3.879 7 N -0.469 5.469 8 C -0.353 4.353 9 H 0.113 0.887 10 C 0.073 3.927 11 N -0.859 5.859 12 Si 0.880 3.120 13 H -0.269 1.269 14 H -0.285 1.285 15 H -0.255 1.255 16 C 0.560 3.440 17 O -0.585 6.585 18 C -0.156 4.156 19 C -0.174 4.174 20 S 0.102 5.898 21 C -0.232 4.232 22 C -0.049 4.049 23 C -0.051 4.051 24 C -0.120 4.120 25 C -0.114 4.114 26 C -0.037 4.037 27 H 0.097 0.903 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.281 0.719 35 H 0.236 0.764 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.780 -5.979 -7.284 9.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.310 3.690 4 O -0.398 6.398 5 C -0.163 4.163 6 C -0.002 4.002 7 N -0.190 5.190 8 C -0.481 4.481 9 H 0.130 0.870 10 C -0.137 4.137 11 N -0.493 5.493 12 Si 0.706 3.294 13 H -0.195 1.195 14 H -0.212 1.212 15 H -0.179 1.179 16 C 0.350 3.650 17 O -0.470 6.470 18 C -0.171 4.171 19 C -0.310 4.310 20 S 0.370 5.630 21 C -0.347 4.347 22 C -0.061 4.061 23 C -0.091 4.091 24 C -0.158 4.158 25 C -0.153 4.153 26 C -0.076 4.076 27 H 0.116 0.884 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.126 0.874 31 H 0.130 0.870 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.251 0.749 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.599 -5.375 -6.701 8.975 hybrid contribution -2.302 0.493 -0.465 2.399 sum 0.297 -4.882 -7.166 8.676 Atomic orbital electron populations 1.23206 0.77057 1.03259 1.02407 1.86541 1.22964 1.34014 1.84417 1.24022 0.92318 0.81021 0.71599 1.90645 1.67371 1.36347 1.45479 1.21856 0.86148 1.02017 1.06324 1.21416 0.83668 0.92643 1.02481 1.43439 1.03333 1.66193 1.06056 1.19029 1.21676 1.10933 0.96451 0.87045 1.25561 0.96785 0.96337 0.94995 1.69630 1.37699 1.30102 1.11852 0.86795 0.81735 0.80080 0.80752 1.19489 1.21194 1.17892 1.17874 0.86201 0.77753 0.83176 1.90617 1.70211 1.54911 1.31273 1.19917 0.94187 1.10524 0.92469 1.28192 0.95217 1.00425 1.07174 1.82838 1.08213 1.69039 1.02880 1.24397 0.97337 1.14701 0.98298 1.20399 0.90998 0.99571 0.95164 1.20472 0.97517 1.02231 0.88852 1.21613 0.95370 1.00513 0.98290 1.21563 0.97282 0.99670 0.96814 1.20170 0.94442 1.00377 0.92628 0.88414 0.92064 0.92085 0.87380 0.86951 0.91011 0.90384 0.90892 0.74853 0.91077 0.89045 0.91873 0.91979 0.91703 0.91848 0.91250 0.91156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 101.05 1.07 1.46 16 2 O -0.36 -5.49 10.57 -39.28 -0.41 -5.90 16 3 C 0.47 8.28 7.96 36.01 0.29 8.56 16 4 O -0.51 -10.30 15.73 -18.74 -0.29 -10.59 16 5 C -0.12 -2.26 6.10 -27.88 -0.17 -2.43 16 6 C 0.12 2.62 2.75 -4.05 -0.01 2.61 16 7 N -0.47 -10.78 2.03 -116.14 -0.24 -11.02 16 8 C -0.35 -8.42 6.45 -14.99 -0.10 -8.52 16 9 H 0.11 2.76 6.38 -52.49 -0.34 2.42 16 10 C 0.07 1.80 5.32 -17.46 -0.09 1.71 16 11 N -0.86 -21.81 13.96 55.50 0.77 -21.03 16 12 Si 0.88 20.35 24.90 -169.99 -4.23 16.12 16 13 H -0.27 -6.19 7.10 56.52 0.40 -5.78 16 14 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 15 H -0.26 -6.09 6.38 56.52 0.36 -5.73 16 16 C 0.56 12.99 7.57 -12.66 -0.10 12.90 16 17 O -0.59 -14.08 14.24 5.22 0.07 -14.00 16 18 C -0.16 -3.34 5.93 -104.56 -0.62 -3.96 16 19 C -0.17 -3.61 9.15 29.83 0.27 -3.33 16 20 S 0.10 1.74 22.99 -107.50 -2.47 -0.73 16 21 C -0.23 -3.86 6.32 -35.35 -0.22 -4.08 16 22 C -0.05 -0.93 5.94 -102.82 -0.61 -1.54 16 23 C -0.05 -0.86 5.19 -27.21 -0.14 -1.00 16 24 C -0.12 -1.56 5.90 -26.63 -0.16 -1.72 16 25 C -0.11 -1.34 5.93 -26.59 -0.16 -1.50 16 26 C -0.04 -0.48 6.26 -27.37 -0.17 -0.65 16 27 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.69 8.13 -51.92 -0.42 0.26 16 29 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 30 H 0.11 1.90 8.14 -51.93 -0.42 1.48 16 31 H 0.11 1.91 8.14 -51.93 -0.42 1.49 16 32 H 0.07 1.61 4.27 -51.92 -0.22 1.39 16 33 H 0.08 1.77 7.45 -51.93 -0.39 1.39 16 34 H 0.28 6.76 8.31 -40.82 -0.34 6.42 16 35 H 0.24 5.37 4.06 -52.49 -0.21 5.16 16 36 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.09 1.71 6.78 -51.93 -0.35 1.35 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 40 H 0.06 0.78 8.11 -51.93 -0.42 0.35 16 41 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 357.19 15.07 5.38 5.38 Total: -1.00 -28.11 357.19 -8.09 -36.20 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -5.75 Total: 7.05 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -0.92 Total: -1.48 kcal Atomic # 7 Polarization: -32.59 SS G_CDS: 0.54 Total: -32.05 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -0.64 Total: -30.49 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.23 Total: 16.12 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -2.47 Total: -0.73 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.11 -8.09 -36.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871339573.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.411 kcal (2) G-P(sol) polarization free energy of solvation -28.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds