Wall clock time and date at job start Sat Apr 11 2020 04:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34237 * 116.99715 * 2 1 4 4 O 1.20817 * 120.00038 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99803 * 180.02562 * 3 2 1 6 6 C 1.52995 * 109.47033 * 179.97438 * 5 3 2 7 7 N 1.46497 * 109.47049 * 180.02562 * 6 5 3 8 8 C 1.36976 * 119.99814 * 264.84432 * 7 6 5 9 9 H 1.08001 * 119.99501 * 123.49971 * 8 7 6 10 10 C 1.38962 * 120.00451 * 303.50394 * 8 7 6 11 11 N 1.31418 * 120.00482 * 184.15801 * 10 8 7 12 12 Si 1.86799 * 120.00091 * 4.16021 * 10 8 7 13 13 H 1.48500 * 109.47426 * 94.71768 * 12 10 8 14 14 H 1.48506 * 109.47380 * 214.72158 * 12 10 8 15 15 H 1.48507 * 109.46776 * 334.71991 * 12 10 8 16 16 C 1.34774 * 120.00280 * 84.85010 * 7 6 5 17 17 O 1.21667 * 119.99879 * 2.35037 * 16 7 6 18 18 C 1.47113 * 120.00165 * 182.35357 * 16 7 6 19 19 C 1.35709 * 123.19945 * 350.92132 * 18 16 7 20 20 S 1.70269 * 110.83072 * 179.73959 * 19 18 16 21 21 C 1.75591 * 92.63484 * 0.28041 * 20 19 18 22 22 C 1.33996 * 110.61363 * 0.02562 * 21 20 19 23 23 C 1.52018 * 123.46246 * 179.97438 * 22 21 20 24 24 C 1.53042 * 108.75657 * 342.85089 * 23 22 21 25 25 C 1.53158 * 109.19718 * 50.67336 * 24 23 22 26 26 C 1.51617 * 125.03681 * 180.02562 * 21 20 19 27 27 H 1.08997 * 109.46757 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46906 * 299.99470 * 1 2 3 29 29 H 1.08996 * 109.47217 * 59.99741 * 1 2 3 30 30 H 1.09001 * 109.46818 * 59.99736 * 5 3 2 31 31 H 1.09000 * 109.47084 * 299.99895 * 5 3 2 32 32 H 1.09008 * 109.47263 * 59.99856 * 6 5 3 33 33 H 1.09000 * 109.47149 * 299.99916 * 6 5 3 34 34 H 0.96998 * 120.00407 * 180.02562 * 11 10 8 35 35 H 1.07997 * 124.58294 * 0.04790 * 19 18 16 36 36 H 1.09007 * 109.59205 * 102.63262 * 23 22 21 37 37 H 1.08998 * 109.59331 * 223.06909 * 23 22 21 38 38 H 1.09006 * 109.51703 * 170.58918 * 24 23 22 39 39 H 1.08997 * 109.51601 * 290.75161 * 24 23 22 40 40 H 1.09002 * 109.54648 * 49.49845 * 25 24 23 41 41 H 1.09009 * 109.53962 * 169.75452 * 25 24 23 42 42 H 1.09000 * 109.59386 * 43.64045 * 26 21 20 43 43 H 1.09002 * 109.59414 * 283.18373 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0001 2.7422 -0.0011 7 7 5.4630 2.8189 -0.0023 8 6 6.1423 2.9613 1.1786 9 1 6.8983 2.2419 1.4568 10 6 5.8587 4.0313 2.0187 11 7 6.5656 4.2143 3.1113 12 14 4.4726 5.2097 1.5950 13 1 3.2316 4.7851 2.2913 14 1 4.8391 6.5817 2.0291 15 1 4.2452 5.1990 0.1275 16 6 6.1406 2.7494 -1.1653 17 8 5.5357 2.6660 -2.2176 18 6 7.6115 2.7743 -1.1622 19 6 8.3479 3.0433 -0.0545 20 16 10.0130 2.9820 -0.4048 21 6 9.7262 2.5915 -2.0925 22 6 8.4119 2.5194 -2.3433 23 6 7.8363 2.1992 -3.7133 24 6 8.9268 2.4084 -4.7664 25 6 10.1910 1.6570 -4.3385 26 6 10.8087 2.3653 -3.1297 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 3.9557 0.7810 -0.8908 31 1 3.9564 0.7807 0.8892 32 1 3.6106 3.2365 0.8889 33 1 3.6100 3.2360 -0.8911 34 1 6.3674 4.9609 3.6979 35 1 7.9338 3.2614 0.9188 36 1 7.5009 1.1622 -3.7356 37 1 6.9960 2.8618 -3.9207 38 1 8.5833 2.0255 -5.7275 39 1 9.1479 3.4720 -4.8554 40 1 9.9327 0.6332 -4.0681 41 1 10.9063 1.6488 -5.1611 42 1 11.5975 1.7443 -2.7054 43 1 11.2229 3.3243 -3.4409 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871339573.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:55:09 Heat of formation + Delta-G solvation = -102.002020 kcal Electronic energy + Delta-G solvation = -27446.635474 eV Core-core repulsion = 23583.074147 eV Total energy + Delta-G solvation = -3863.561327 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.71842 -41.04225 -39.31038 -37.73428 -37.00311 -35.76535 -34.36029 -32.65113 -31.56990 -29.89025 -28.67738 -27.27018 -26.16584 -24.54163 -24.00348 -22.50066 -21.93424 -20.78091 -19.54122 -19.14051 -18.70843 -17.98883 -17.85557 -17.64473 -17.30376 -16.45372 -16.03049 -15.95673 -15.36235 -15.32367 -15.06556 -14.71201 -14.62288 -14.49894 -14.33382 -14.10816 -13.93654 -13.68165 -13.52973 -13.42058 -13.19592 -13.06113 -12.90497 -12.54688 -12.30910 -12.19238 -12.02905 -11.89396 -11.77512 -11.70859 -11.65524 -11.51959 -11.13586 -11.00868 -10.50110 -9.66105 -9.31421 -9.04651 -8.56484 -6.41206 0.13114 0.85206 1.03300 1.11290 1.18400 1.25346 1.27753 1.35322 1.59563 2.10175 2.53066 2.62987 2.81809 3.67350 3.79562 3.83671 4.01139 4.04318 4.10086 4.27037 4.27949 4.28609 4.33591 4.37449 4.48673 4.63250 4.64853 4.66157 4.72202 4.80856 4.89476 4.96311 5.07544 5.11915 5.19430 5.23668 5.25465 5.37910 5.47361 5.51003 5.59067 5.79339 5.98963 6.09513 6.59595 6.85372 7.28055 7.67663 8.49575 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.011547 B = 0.004312 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.260184 B = 6491.617448 C = 8182.175310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.360 6.360 3 C 0.475 3.525 4 O -0.540 6.540 5 C -0.117 4.117 6 C 0.121 3.879 7 N -0.475 5.475 8 C -0.337 4.337 9 H 0.101 0.899 10 C 0.049 3.951 11 N -0.884 5.884 12 Si 0.913 3.087 13 H -0.267 1.267 14 H -0.282 1.282 15 H -0.272 1.272 16 C 0.551 3.449 17 O -0.601 6.601 18 C -0.177 4.177 19 C -0.203 4.203 20 S 0.160 5.840 21 C -0.216 4.216 22 C -0.079 4.079 23 C -0.048 4.048 24 C -0.115 4.115 25 C -0.109 4.109 26 C -0.040 4.040 27 H 0.138 0.862 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.113 0.887 31 H 0.125 0.875 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.284 0.716 35 H 0.212 0.788 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.083 0.917 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.388 -7.188 -8.702 11.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.276 6.276 3 C 0.319 3.681 4 O -0.430 6.430 5 C -0.155 4.155 6 C -0.002 4.002 7 N -0.197 5.197 8 C -0.465 4.465 9 H 0.118 0.882 10 C -0.158 4.158 11 N -0.519 5.519 12 Si 0.740 3.260 13 H -0.192 1.192 14 H -0.208 1.208 15 H -0.197 1.197 16 C 0.342 3.658 17 O -0.487 6.487 18 C -0.193 4.193 19 C -0.340 4.340 20 S 0.429 5.571 21 C -0.332 4.332 22 C -0.090 4.090 23 C -0.088 4.088 24 C -0.152 4.152 25 C -0.148 4.148 26 C -0.079 4.079 27 H 0.156 0.844 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.131 0.869 31 H 0.143 0.857 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.228 0.772 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.101 0.899 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.116 0.884 42 H 0.109 0.891 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.194 -6.602 -8.104 11.263 hybrid contribution -2.768 0.802 -0.069 2.883 sum 1.426 -5.800 -8.173 10.123 Atomic orbital electron populations 1.23612 0.74552 1.05976 1.02573 1.86512 1.25299 1.32133 1.83647 1.23749 0.91960 0.81397 0.70976 1.90635 1.67877 1.37455 1.47035 1.21656 0.87144 0.99551 1.07156 1.21322 0.82935 0.94882 1.01065 1.43524 1.03832 1.66461 1.05855 1.18872 1.21088 1.10286 0.96253 0.88213 1.25821 0.97737 0.97044 0.95213 1.69655 1.38719 1.30939 1.12636 0.86291 0.80822 0.79506 0.79345 1.19218 1.20816 1.19721 1.18278 0.87320 0.77326 0.82905 1.90590 1.70853 1.55631 1.31625 1.20106 0.93424 1.11675 0.94102 1.27765 0.98253 1.01816 1.06207 1.82503 1.04148 1.67513 1.02963 1.25015 0.97756 1.11590 0.98830 1.20571 0.91659 1.01532 0.95229 1.20428 0.98030 1.01062 0.89253 1.21599 0.94857 1.00995 0.97782 1.21575 0.97026 0.98926 0.97297 1.20431 0.93566 1.01996 0.91907 0.84429 0.91965 0.91958 0.86868 0.85745 0.92012 0.92099 0.90605 0.77249 0.91638 0.91943 0.89861 0.91973 0.91938 0.88436 0.89056 0.89344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.56 113.37 1.20 1.73 16 2 O -0.36 -10.45 10.57 -51.48 -0.54 -11.00 16 3 C 0.47 16.81 7.96 71.24 0.57 17.38 16 4 O -0.54 -22.01 15.73 21.99 0.35 -21.66 16 5 C -0.12 -4.29 6.10 29.85 0.18 -4.11 16 6 C 0.12 5.43 2.75 86.38 0.24 5.66 16 7 N -0.48 -22.66 2.03 -639.58 -1.30 -23.96 16 8 C -0.34 -16.63 6.45 84.06 0.54 -16.09 16 9 H 0.10 5.15 6.38 -2.91 -0.02 5.13 16 10 C 0.05 2.48 5.32 84.93 0.45 2.93 16 11 N -0.88 -45.82 13.96 21.67 0.30 -45.52 16 12 Si 0.91 42.96 24.90 68.60 1.71 44.67 16 13 H -0.27 -12.31 7.10 99.48 0.71 -11.61 16 14 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 15 H -0.27 -13.47 6.38 99.48 0.63 -12.84 16 16 C 0.55 26.53 7.57 86.57 0.66 27.19 16 17 O -0.60 -30.06 14.24 -4.24 -0.06 -30.12 16 18 C -0.18 -7.77 5.93 -19.82 -0.12 -7.89 16 19 C -0.20 -8.59 9.15 67.23 0.62 -7.98 16 20 S 0.16 5.22 22.99 -56.49 -1.30 3.92 16 21 C -0.22 -6.71 6.32 25.01 0.16 -6.55 16 22 C -0.08 -2.93 5.94 -18.69 -0.11 -3.04 16 23 C -0.05 -1.60 5.19 30.28 0.16 -1.44 16 24 C -0.11 -2.69 5.90 30.66 0.18 -2.51 16 25 C -0.11 -2.10 5.93 30.69 0.18 -1.92 16 26 C -0.04 -0.86 6.26 30.18 0.19 -0.67 16 27 H 0.14 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.06 1.31 8.13 -2.38 -0.02 1.29 16 29 H 0.06 1.30 8.13 -2.39 -0.02 1.29 16 30 H 0.11 4.05 8.14 -2.39 -0.02 4.03 16 31 H 0.12 4.26 8.14 -2.39 -0.02 4.24 16 32 H 0.06 2.87 4.27 -2.38 -0.01 2.86 16 33 H 0.06 2.90 7.45 -2.39 -0.02 2.89 16 34 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 35 H 0.21 9.99 4.06 -2.91 -0.01 9.97 16 36 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 37 H 0.06 2.40 6.78 -2.39 -0.02 2.38 16 38 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 39 H 0.06 1.46 8.10 -2.39 -0.02 1.44 16 40 H 0.06 1.26 8.11 -2.39 -0.02 1.24 16 41 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 42 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -62.93 357.19 5.21 -57.71 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: 0.97 Total: 23.25 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: 5.09 Total: 2.71 kcal Atomic # 7 Polarization: -68.48 SS G_CDS: -0.99 Total: -69.48 kcal Atomic # 8 Polarization: -62.52 SS G_CDS: -0.26 Total: -62.78 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 1.71 Total: 44.67 kcal Atomic # 16 Polarization: 5.22 SS G_CDS: -1.30 Total: 3.92 kcal Total: -62.93 5.21 -57.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871339573.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.288 kcal (2) G-P(sol) polarization free energy of solvation -62.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds