Wall clock time and date at job start Sat Apr 11 2020 04:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34239 * 116.99855 * 2 1 4 4 O 1.20826 * 119.99758 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99968 * 180.27752 * 3 2 1 6 6 C 1.52998 * 109.46858 * 179.72086 * 5 3 2 7 7 N 1.46499 * 109.46795 * 179.97438 * 6 5 3 8 8 C 1.37103 * 120.00074 * 266.87447 * 7 6 5 9 9 H 1.07994 * 119.99902 * 147.71146 * 8 7 6 10 10 C 1.38951 * 119.99799 * 327.70142 * 8 7 6 11 11 N 1.31405 * 120.00396 * 333.61600 * 10 8 7 12 12 Si 1.86801 * 119.99740 * 153.61269 * 10 8 7 13 13 H 1.48502 * 109.47254 * 85.00067 * 12 10 8 14 14 H 1.48495 * 109.46997 * 205.00115 * 12 10 8 15 15 H 1.48498 * 109.46883 * 324.99902 * 12 10 8 16 16 C 1.34781 * 120.00044 * 86.87375 * 7 6 5 17 17 O 1.21288 * 119.99629 * 359.97438 * 16 7 6 18 18 C 1.50700 * 120.00123 * 179.97438 * 16 7 6 19 19 H 1.08999 * 110.66675 * 55.69825 * 18 16 7 20 20 C 1.54709 * 110.74504 * 292.48745 * 18 16 7 21 21 C 1.51941 * 101.77388 * 216.42332 * 20 18 16 22 22 C 1.37758 * 132.08066 * 195.79287 * 21 20 18 23 23 C 1.38529 * 119.95876 * 179.33709 * 22 21 20 24 24 F 1.35105 * 120.14364 * 180.02562 * 23 22 21 25 25 C 1.38473 * 119.71478 * 359.97438 * 23 22 21 26 26 C 1.37938 * 120.32517 * 0.15604 * 25 23 22 27 27 C 1.38866 * 107.10556 * 15.46061 * 21 20 18 28 28 O 1.36183 * 111.24008 * 0.77832 * 27 21 20 29 29 H 1.09001 * 109.47210 * 59.99886 * 1 2 3 30 30 H 1.08996 * 109.46994 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47225 * 299.99743 * 1 2 3 32 32 H 1.09000 * 109.47174 * 299.72610 * 5 3 2 33 33 H 1.09007 * 109.46662 * 59.72606 * 5 3 2 34 34 H 1.08995 * 109.47345 * 299.99916 * 6 5 3 35 35 H 1.09007 * 109.47059 * 60.00763 * 6 5 3 36 36 H 0.96997 * 120.00184 * 179.97438 * 11 10 8 37 37 H 1.09000 * 110.94380 * 334.46130 * 20 18 16 38 38 H 1.08998 * 110.93718 * 98.15808 * 20 18 16 39 39 H 1.08001 * 120.01970 * 359.35594 * 22 21 20 40 40 H 1.07998 * 119.84181 * 180.16399 * 25 23 22 41 41 H 1.07990 * 119.86142 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0063 6 6 4.0000 2.7422 -0.0120 7 7 5.4629 2.8189 -0.0175 8 6 6.1484 2.9228 1.1653 9 1 7.1281 2.4788 1.2624 10 6 5.5827 3.5994 2.2390 11 7 4.6982 4.5476 2.0258 12 14 6.0796 3.1612 3.9856 13 1 7.3126 3.9040 4.3506 14 1 4.9850 3.5299 4.9188 15 1 6.3362 1.7013 4.0757 16 6 6.1350 2.7874 -1.1854 17 8 5.5286 2.6950 -2.2317 18 6 7.6399 2.8668 -1.1911 19 1 8.0690 2.0802 -0.5705 20 6 8.1169 4.2602 -0.7174 21 6 9.3323 4.4885 -1.6002 22 6 10.3784 5.3811 -1.5181 23 6 11.3815 5.3610 -2.4734 24 9 12.4094 6.2343 -2.3962 25 6 11.3265 4.4413 -3.5071 26 6 10.2776 3.5494 -3.5908 27 6 9.2637 3.5663 -2.6362 28 8 8.1488 2.7911 -2.5335 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.9597 0.7832 0.8833 33 1 3.9524 0.7786 -0.8967 34 1 3.6066 3.2339 -0.9017 35 1 3.6139 3.2387 0.8784 36 1 4.3031 5.0197 2.7754 37 1 7.3543 5.0168 -0.9023 38 1 8.3955 4.2392 0.3361 39 1 10.4167 6.0958 -0.7094 40 1 12.1088 4.4220 -4.2515 41 1 10.2425 2.8350 -4.3999 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871342167.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:55:27 Heat of formation + Delta-G solvation = -159.411021 kcal Electronic energy + Delta-G solvation = -28966.592167 eV Core-core repulsion = 24534.328223 eV Total energy + Delta-G solvation = -4432.263944 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.120 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.75663 -40.98923 -40.10815 -38.59748 -36.89608 -36.20643 -35.06721 -32.62288 -32.14604 -31.01826 -29.51244 -29.09734 -27.50874 -25.26504 -24.68149 -22.95678 -22.09468 -21.61478 -20.36907 -19.39801 -17.81406 -17.37056 -17.17888 -16.98759 -16.83432 -16.29847 -16.19158 -15.90494 -15.48686 -14.87891 -14.70757 -14.62121 -14.10934 -13.86305 -13.63687 -13.55002 -13.24114 -12.99499 -12.70408 -12.59946 -12.48630 -12.31818 -12.27076 -11.96337 -11.74276 -11.53211 -11.42440 -11.10353 -10.94628 -10.72227 -10.59554 -10.56758 -10.47878 -10.20876 -10.09152 -9.33491 -8.95077 -8.67541 -7.85903 -7.83063 -6.62639 -4.28099 1.21736 1.27894 2.60103 2.93765 2.97060 3.11184 3.12963 3.31688 3.53023 3.63651 3.95480 4.21576 4.52419 4.69093 4.78524 4.86564 5.04871 5.17357 5.20124 5.23787 5.26858 5.40218 5.49090 5.58079 5.64650 5.69288 5.77061 5.90454 6.01846 6.09473 6.15898 6.18406 6.26182 6.37548 6.48761 6.64719 6.69433 6.74695 7.12630 7.23878 7.36064 7.57672 8.07991 8.12286 8.82103 9.19166 9.62210 10.38330 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.013764 B = 0.003253 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.866023 B = 8605.471586 C =10158.979471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.467 3.533 4 O -0.505 6.505 5 C -0.126 4.126 6 C 0.128 3.872 7 N -0.427 5.427 8 C -0.362 4.362 9 H 0.095 0.905 10 C 0.052 3.948 11 N -0.838 5.838 12 Si 0.906 3.094 13 H -0.273 1.273 14 H -0.280 1.280 15 H -0.266 1.266 16 C 0.471 3.529 17 O -0.581 6.581 18 C 0.085 3.915 19 H 0.103 0.897 20 C -0.080 4.080 21 C -0.143 4.143 22 C -0.102 4.102 23 C 0.057 3.943 24 F -0.143 7.143 25 C -0.121 4.121 26 C -0.117 4.117 27 C 0.107 3.893 28 O -0.277 6.277 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.106 0.894 33 H 0.100 0.900 34 H 0.067 0.933 35 H 0.119 0.881 36 H 0.275 0.725 37 H 0.099 0.901 38 H 0.109 0.891 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.903 -4.164 -2.027 6.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.283 6.283 3 C 0.310 3.690 4 O -0.392 6.392 5 C -0.165 4.165 6 C 0.004 3.996 7 N -0.146 5.146 8 C -0.489 4.489 9 H 0.113 0.887 10 C -0.157 4.157 11 N -0.472 5.472 12 Si 0.732 3.268 13 H -0.199 1.199 14 H -0.206 1.206 15 H -0.191 1.191 16 C 0.258 3.742 17 O -0.465 6.465 18 C 0.026 3.974 19 H 0.121 0.879 20 C -0.118 4.118 21 C -0.144 4.144 22 C -0.121 4.121 23 C 0.038 3.962 24 F -0.122 7.122 25 C -0.140 4.140 26 C -0.136 4.136 27 C 0.060 3.940 28 O -0.189 6.189 29 H 0.079 0.921 30 H 0.114 0.886 31 H 0.079 0.921 32 H 0.124 0.876 33 H 0.118 0.882 34 H 0.086 0.914 35 H 0.137 0.863 36 H 0.085 0.915 37 H 0.117 0.883 38 H 0.127 0.873 39 H 0.155 0.845 40 H 0.157 0.843 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.130 -3.866 -2.580 6.218 hybrid contribution 0.150 0.109 1.195 1.210 sum 4.280 -3.758 -1.384 5.861 Atomic orbital electron populations 1.23175 0.77270 1.03085 1.02364 1.86538 1.22812 1.34319 1.84622 1.24017 0.92328 0.80935 0.71768 1.90656 1.67264 1.36220 1.45051 1.21878 0.86050 1.03086 1.05443 1.21219 0.81299 0.91343 1.05713 1.43320 1.04656 1.62202 1.04388 1.19381 1.04530 1.36400 0.88599 0.88725 1.25298 0.96747 0.93209 1.00431 1.69974 1.27529 1.16696 1.33039 0.86287 0.78687 0.79664 0.82202 1.19872 1.20567 1.19089 1.19813 0.87589 0.82325 0.84454 1.90602 1.69230 1.54918 1.31752 1.23008 0.95086 0.98787 0.80512 0.87914 1.21677 0.93401 0.96314 1.00365 1.20955 0.97366 0.97058 0.99025 1.20201 0.92748 0.99856 0.99288 1.17342 0.87740 0.92899 0.98250 1.91468 1.56885 1.67580 1.96296 1.20729 0.99429 0.95520 0.98316 1.20005 0.91898 1.01574 1.00151 1.19734 0.87827 0.91060 0.95381 1.86938 1.36768 1.64200 1.31021 0.92135 0.88575 0.92146 0.87587 0.88226 0.91428 0.86340 0.91459 0.88275 0.87255 0.84527 0.84284 0.84556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.56 101.05 1.07 1.49 16 2 O -0.37 -5.78 10.57 -39.28 -0.42 -6.20 16 3 C 0.47 8.65 7.96 36.01 0.29 8.94 16 4 O -0.51 -10.65 15.73 -18.75 -0.29 -10.95 16 5 C -0.13 -2.38 6.12 -27.88 -0.17 -2.55 16 6 C 0.13 2.88 4.25 -4.04 -0.02 2.87 16 7 N -0.43 -9.65 2.56 -114.81 -0.29 -9.94 16 8 C -0.36 -7.94 7.65 -14.93 -0.11 -8.05 16 9 H 0.10 1.92 6.74 -52.49 -0.35 1.57 16 10 C 0.05 1.17 4.85 -17.47 -0.08 1.08 16 11 N -0.84 -20.24 11.46 55.50 0.64 -19.61 16 12 Si 0.91 17.41 29.63 -169.99 -5.04 12.37 16 13 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 14 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 15 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 16 C 0.47 10.74 6.99 -10.98 -0.08 10.67 16 17 O -0.58 -15.00 16.20 -13.51 -0.22 -15.22 16 18 C 0.08 1.64 3.11 -26.98 -0.08 1.56 16 19 H 0.10 1.79 7.46 -51.93 -0.39 1.40 16 20 C -0.08 -1.42 5.72 -26.37 -0.15 -1.57 16 21 C -0.14 -2.31 6.27 -103.95 -0.65 -2.96 16 22 C -0.10 -1.46 10.02 -39.65 -0.40 -1.85 16 23 C 0.06 0.77 7.31 -39.39 -0.29 0.49 16 24 F -0.14 -1.94 17.27 2.25 0.04 -1.90 16 25 C -0.12 -1.49 10.00 -39.60 -0.40 -1.89 16 26 C -0.12 -1.60 10.06 -39.31 -0.40 -2.00 16 27 C 0.11 1.79 7.04 -38.96 -0.27 1.52 16 28 O -0.28 -5.45 10.39 -39.39 -0.41 -5.86 16 29 H 0.06 0.72 8.13 -51.93 -0.42 0.29 16 30 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 32 H 0.11 1.86 8.14 -51.93 -0.42 1.44 16 33 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 34 H 0.07 1.65 7.48 -51.93 -0.39 1.27 16 35 H 0.12 2.88 5.33 -51.93 -0.28 2.60 16 36 H 0.27 6.34 8.31 -40.82 -0.34 6.00 16 37 H 0.10 1.94 7.92 -51.93 -0.41 1.53 16 38 H 0.11 1.81 7.70 -51.93 -0.40 1.41 16 39 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 41 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 358.82 15.07 5.41 5.41 Total: -1.00 -28.74 358.82 -7.07 -35.81 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -4.73 Total: 8.36 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: -1.75 Total: 7.72 kcal Atomic # 7 Polarization: -29.89 SS G_CDS: 0.34 Total: -29.55 kcal Atomic # 8 Polarization: -36.89 SS G_CDS: -1.34 Total: -38.23 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 17.41 SS G_CDS: -5.04 Total: 12.37 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.74 -7.07 -35.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871342167.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.603 kcal (2) G-P(sol) polarization free energy of solvation -28.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds