Wall clock time and date at job start Sat Apr 11 2020 04:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45202 * 109.47432 * 2 1 4 4 C 1.34227 * 117.00382 * 179.97438 * 3 2 1 5 5 O 1.20820 * 120.00035 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99698 * 180.02562 * 4 3 2 7 7 H 1.08996 * 109.46929 * 299.99471 * 6 4 3 8 8 C 1.52991 * 109.47385 * 59.99957 * 6 4 3 9 9 C 1.53002 * 109.46770 * 179.97438 * 6 4 3 10 10 C 1.53942 * 113.74269 * 158.73795 * 9 6 4 11 11 N 1.47810 * 86.04036 * 222.08449 * 10 9 6 12 12 C 1.34776 * 134.45724 * 204.64144 * 11 10 9 13 13 O 1.21762 * 119.99606 * 179.86565 * 12 11 10 14 14 C 1.46236 * 120.00209 * 359.87220 * 12 11 10 15 15 S 1.75665 * 125.22358 * 359.69027 * 14 12 11 16 16 C 1.75480 * 92.08868 * 179.97438 * 15 14 12 17 17 C 1.32757 * 111.36065 * 0.35706 * 16 15 14 18 18 C 1.39543 * 125.23096 * 179.97438 * 14 12 11 19 19 C 1.40546 * 123.71225 * 359.96479 * 18 14 12 20 20 H 1.08001 * 120.00000 * 336.49823 * 19 18 14 21 21 C 1.40301 * 119.99732 * 156.49778 * 19 18 14 22 22 N 1.30642 * 120.00210 * 350.14884 * 21 19 18 23 23 Si 1.86801 * 120.00053 * 170.14814 * 21 19 18 24 24 H 1.48506 * 109.46906 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47308 * 119.99685 * 23 21 19 26 26 H 1.48505 * 109.47148 * 240.00132 * 23 21 19 27 27 C 1.47587 * 91.05015 * 24.55159 * 11 10 9 28 28 H 1.08996 * 109.46759 * 299.99953 * 1 2 3 29 29 H 1.09000 * 109.47215 * 60.00123 * 1 2 3 30 30 H 1.09001 * 109.46899 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47395 * 239.99894 * 2 1 3 32 32 H 1.09000 * 109.47215 * 119.99877 * 2 1 3 33 33 H 1.09008 * 109.47162 * 59.99728 * 8 6 4 34 34 H 1.09002 * 109.47483 * 179.97438 * 8 6 4 35 35 H 1.09004 * 109.47532 * 299.99976 * 8 6 4 36 36 H 1.09000 * 112.94764 * 290.33388 * 9 6 4 37 37 H 1.09006 * 113.76880 * 336.35418 * 10 9 6 38 38 H 1.09000 * 113.76863 * 107.74431 * 10 9 6 39 39 H 1.07999 * 124.31525 * 180.12353 * 16 15 14 40 40 H 1.08008 * 122.78287 * 179.72901 * 17 16 15 41 41 H 0.96998 * 119.99794 * 180.02562 * 22 21 19 42 42 H 1.08998 * 113.76637 * 221.15666 * 27 11 10 43 43 H 1.08994 * 113.86982 * 89.76424 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9207 2.9375 0.0012 7 1 3.5851 3.4698 -0.8888 8 6 3.4487 3.6840 1.2503 9 6 5.4486 2.8574 0.0023 10 6 6.1367 4.1364 -0.5080 11 7 7.0518 3.2313 -1.2347 12 6 8.3113 3.3387 -1.7023 13 8 8.8287 2.3992 -2.2788 14 6 9.0564 4.5832 -1.5172 15 16 8.4437 6.0214 -0.7159 16 6 9.9474 6.8868 -0.9791 17 6 10.8293 6.1373 -1.6294 18 6 10.3614 4.8128 -1.9548 19 6 11.1340 3.8587 -2.6389 20 1 10.9126 2.8071 -2.5317 21 6 12.1930 4.2724 -3.4610 22 7 12.3432 5.5386 -3.7451 23 14 13.3882 3.0125 -4.1494 24 1 13.0022 1.6569 -3.6818 25 1 13.3510 3.0540 -5.6333 26 1 14.7619 3.3251 -3.6797 27 6 6.0338 2.1628 -1.2407 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.7843 3.1516 2.1404 34 1 3.8656 4.6912 1.2510 35 1 2.3601 3.7411 1.2500 36 1 5.8540 2.4867 0.9438 37 1 5.5085 4.7428 -1.1605 38 1 6.6223 4.7169 0.2765 39 1 10.1305 7.9012 -0.6567 40 1 11.8158 6.4899 -1.8919 41 1 13.0752 5.8245 -4.3138 42 1 6.4375 1.1704 -1.0401 43 1 5.3746 2.1865 -2.1084 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874735967.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:55:46 Heat of formation + Delta-G solvation = -73.948550 kcal Electronic energy + Delta-G solvation = -26424.482980 eV Core-core repulsion = 22562.138143 eV Total energy + Delta-G solvation = -3862.344837 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.89207 -39.37803 -37.25662 -36.58228 -35.64666 -33.67083 -33.03470 -31.81454 -29.27767 -28.35337 -26.14039 -25.85912 -24.82012 -23.38149 -22.21459 -21.40434 -19.94854 -19.23578 -18.59210 -17.78118 -17.07121 -16.83288 -16.52254 -15.95843 -15.35581 -15.09593 -14.77379 -14.60325 -13.99017 -13.76845 -13.58432 -13.28951 -13.06191 -13.04945 -12.58904 -12.44156 -12.31111 -12.19238 -12.02320 -11.87672 -11.79115 -11.75831 -11.43994 -11.38936 -11.08948 -11.06055 -10.95323 -10.74747 -10.61314 -10.37777 -10.19354 -10.09538 -9.57628 -9.17468 -8.40738 -7.91148 -7.45429 -7.11648 -7.02720 -4.50413 2.11846 2.17924 2.46080 2.96242 3.01082 3.11788 3.16704 3.62084 3.67979 3.81604 3.88158 4.29755 4.38324 4.58209 4.63827 4.68038 4.70347 4.97864 5.00255 5.07400 5.24467 5.33082 5.41165 5.45844 5.47880 5.57727 5.64765 5.71718 5.76850 5.89908 5.92112 5.94856 6.08546 6.19286 6.31886 6.45025 6.83271 6.98269 7.20150 7.25938 7.51407 7.65311 7.76281 8.37146 8.52711 8.65609 8.84005 9.59529 9.88197 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.019338 B = 0.002694 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.613541 B =10391.880483 C =11660.784463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.360 6.360 4 C 0.464 3.536 5 O -0.498 6.498 6 C -0.073 4.073 7 H 0.113 0.887 8 C -0.143 4.143 9 C -0.110 4.110 10 C 0.116 3.884 11 N -0.657 5.657 12 C 0.623 3.377 13 O -0.560 6.560 14 C -0.424 4.424 15 S -0.041 6.041 16 C -0.215 4.215 17 C -0.099 4.099 18 C 0.140 3.860 19 C -0.377 4.377 20 H 0.111 0.889 21 C 0.067 3.933 22 N -0.778 5.778 23 Si 0.924 3.076 24 H -0.253 1.253 25 H -0.270 1.270 26 H -0.270 1.270 27 C 0.125 3.875 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.106 0.894 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.136 0.864 40 H 0.144 0.856 41 H 0.287 0.713 42 H 0.080 0.920 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.346 -2.035 7.355 18.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.277 6.277 4 C 0.307 3.693 5 O -0.384 6.384 6 C -0.093 4.093 7 H 0.131 0.869 8 C -0.200 4.200 9 C -0.129 4.129 10 C -0.009 4.009 11 N -0.395 5.395 12 C 0.423 3.577 13 O -0.443 6.443 14 C -0.543 4.543 15 S 0.214 5.786 16 C -0.349 4.349 17 C -0.131 4.131 18 C 0.128 3.872 19 C -0.408 4.408 20 H 0.129 0.871 21 C -0.155 4.155 22 N -0.403 5.403 23 Si 0.747 3.253 24 H -0.176 1.176 25 H -0.195 1.195 26 H -0.195 1.195 27 C 0.002 3.998 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.124 0.876 37 H 0.095 0.905 38 H 0.105 0.895 39 H 0.153 0.847 40 H 0.162 0.838 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.820 -2.296 7.505 19.472 hybrid contribution 1.800 -0.683 -1.114 2.224 sum -16.020 -2.979 6.391 17.503 Atomic orbital electron populations 1.21801 0.92714 1.02905 1.03481 1.23011 0.95264 0.80438 1.02656 1.86501 1.24817 1.32195 1.84188 1.23813 0.80385 0.92802 0.72330 1.90696 1.60251 1.43037 1.44432 1.21126 0.95554 0.89939 1.02703 0.86939 1.21756 1.01949 1.00902 0.95404 1.23181 0.90706 0.98358 1.00631 1.23078 0.89935 0.92908 0.94977 1.49793 1.12170 1.16184 1.61345 1.16556 0.77911 0.86587 0.76632 1.90671 1.68064 1.40529 1.44997 1.22490 0.99942 0.97750 1.34080 1.82697 1.19029 1.09452 1.67427 1.25099 0.98519 1.02621 1.08632 1.21701 1.00526 0.94174 0.96703 1.17941 0.88973 0.90965 0.89289 1.20072 1.06441 0.96844 1.17438 0.87112 1.26381 0.97553 0.96306 0.95227 1.69682 1.27496 1.16733 1.26355 0.85972 0.78784 0.81575 0.78962 1.17585 1.19506 1.19461 1.22825 0.88205 0.93947 0.94870 0.91515 0.91470 0.90335 0.91208 0.91294 0.91988 0.90423 0.91291 0.87565 0.90466 0.89474 0.84661 0.83841 0.90177 0.90192 0.91555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 10.29 37.16 0.38 -0.49 16 2 C 0.06 0.51 6.19 37.16 0.23 0.74 16 3 O -0.36 -3.73 10.12 -39.25 -0.40 -4.13 16 4 C 0.46 5.51 7.07 36.01 0.25 5.76 16 5 O -0.50 -7.41 14.79 -18.75 -0.28 -7.69 16 6 C -0.07 -0.75 2.56 -91.77 -0.24 -0.98 16 7 H 0.11 1.00 7.98 -51.93 -0.41 0.58 16 8 C -0.14 -1.12 9.11 37.15 0.34 -0.78 16 9 C -0.11 -1.46 2.85 -89.69 -0.26 -1.72 16 10 C 0.12 1.78 6.84 -2.84 -0.02 1.76 16 11 N -0.66 -13.55 3.61 -179.84 -0.65 -14.20 16 12 C 0.62 16.18 8.00 -13.05 -0.10 16.07 16 13 O -0.56 -16.35 15.18 5.13 0.08 -16.27 16 14 C -0.42 -11.04 6.50 -35.88 -0.23 -11.28 16 15 S -0.04 -0.88 19.83 -107.50 -2.13 -3.02 16 16 C -0.22 -4.72 11.07 28.86 0.32 -4.40 16 17 C -0.10 -2.45 9.04 -39.13 -0.35 -2.80 16 18 C 0.14 3.81 5.68 -106.21 -0.60 3.21 16 19 C -0.38 -10.44 8.51 -37.94 -0.32 -10.76 16 20 H 0.11 3.25 6.04 -52.49 -0.32 2.93 16 21 C 0.07 1.66 5.39 -17.28 -0.09 1.57 16 22 N -0.78 -19.13 10.81 55.57 0.60 -18.53 16 23 Si 0.92 18.97 29.57 -169.99 -5.03 13.95 16 24 H -0.25 -5.36 7.11 56.52 0.40 -4.96 16 25 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 26 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 27 C 0.12 2.14 7.05 -2.96 -0.02 2.12 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.62 8.13 -51.93 -0.42 0.19 16 32 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 33 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.47 8.11 -51.93 -0.42 0.05 16 36 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.08 1.06 7.99 -51.93 -0.41 0.64 16 38 H 0.09 1.36 6.42 -51.93 -0.33 1.03 16 39 H 0.14 2.51 8.06 -52.49 -0.42 2.09 16 40 H 0.14 3.52 6.39 -52.48 -0.34 3.19 16 41 H 0.29 6.29 8.29 -40.82 -0.34 5.95 16 42 H 0.08 1.50 8.09 -51.93 -0.42 1.08 16 43 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 LS Contribution 371.98 15.07 5.61 5.61 Total: -1.00 -32.61 371.98 -8.93 -41.54 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -6.02 Total: 4.73 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -0.72 Total: -1.99 kcal Atomic # 7 Polarization: -32.68 SS G_CDS: -0.05 Total: -32.73 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -0.60 Total: -28.09 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.95 kcal Atomic # 16 Polarization: -0.88 SS G_CDS: -2.13 Total: -3.02 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.61 -8.93 -41.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874735967.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.411 kcal (2) G-P(sol) polarization free energy of solvation -32.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds