Wall clock time and date at job start Sat Apr 11 2020 04:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34231 * 116.99713 * 2 1 4 4 O 1.20827 * 120.00573 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99470 * 179.97438 * 3 2 1 6 6 N 1.46492 * 110.43608 * 325.70215 * 5 3 2 7 7 C 1.46506 * 120.00297 * 233.73787 * 6 5 3 8 8 C 1.34781 * 120.00157 * 53.74021 * 6 5 3 9 9 O 1.21757 * 119.99523 * 3.72550 * 8 6 5 10 10 C 1.46234 * 120.00086 * 183.71773 * 8 6 5 11 11 S 1.75671 * 125.23071 * 350.97492 * 10 8 6 12 12 C 1.75471 * 92.09203 * 180.21960 * 11 10 8 13 13 C 1.32760 * 111.36449 * 359.83217 * 12 11 10 14 14 C 1.39544 * 125.22675 * 170.89378 * 10 8 6 15 15 C 1.40540 * 123.71502 * 359.97438 * 14 10 8 16 16 H 1.07999 * 119.99845 * 335.74476 * 15 14 10 17 17 C 1.40299 * 119.99987 * 155.75199 * 15 14 10 18 18 N 1.30637 * 120.00430 * 336.39815 * 17 15 14 19 19 Si 1.86806 * 120.00055 * 156.39643 * 17 15 14 20 20 H 1.48501 * 109.47057 * 180.02562 * 19 17 15 21 21 H 1.48501 * 109.47108 * 300.00143 * 19 17 15 22 22 H 1.48500 * 109.46887 * 59.99944 * 19 17 15 23 23 C 1.54888 * 110.59772 * 88.32256 * 5 3 2 24 24 C 1.54888 * 102.75177 * 156.67184 * 23 5 3 25 25 C 1.54269 * 104.19590 * 322.05838 * 24 23 5 26 26 C 1.53878 * 106.59618 * 23.60711 * 25 24 23 27 27 H 1.09007 * 109.47185 * 59.99457 * 1 2 3 28 28 H 1.08991 * 109.47359 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47005 * 300.00439 * 1 2 3 30 30 H 1.08998 * 109.47476 * 234.45759 * 7 6 5 31 31 H 1.09003 * 109.46840 * 354.45683 * 7 6 5 32 32 H 1.08999 * 109.46757 * 114.44849 * 7 6 5 33 33 H 1.07996 * 124.31343 * 179.87158 * 12 11 10 34 34 H 1.08000 * 122.78784 * 180.02562 * 13 12 11 35 35 H 0.96998 * 119.99850 * 353.93133 * 18 17 15 36 36 H 1.08997 * 110.75613 * 274.98747 * 23 5 3 37 37 H 1.09006 * 110.75778 * 38.36213 * 23 5 3 38 38 H 1.08994 * 110.49032 * 203.38074 * 24 23 5 39 39 H 1.09005 * 110.48460 * 80.73387 * 24 23 5 40 40 H 1.08996 * 110.03566 * 264.32108 * 25 24 23 41 41 H 1.09003 * 110.03338 * 142.88725 * 25 24 23 42 42 H 1.09003 * 110.03205 * 240.71420 * 26 25 24 43 43 H 1.09005 * 110.03199 * 119.28864 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5663 1.2748 0.0006 6 7 4.1361 0.1693 0.7746 7 6 5.0816 0.4451 1.8592 8 6 3.7907 -1.1018 0.4888 9 8 3.0584 -1.3360 -0.4553 10 6 4.2954 -2.1995 1.3126 11 16 5.5266 -2.0497 2.5567 12 6 5.4494 -3.7625 2.9298 13 6 4.5565 -4.3836 2.1686 14 6 3.8720 -3.5267 1.2324 15 6 2.8904 -3.9794 0.3342 16 1 2.1547 -3.2906 -0.0539 17 6 2.8662 -5.3262 -0.0582 18 7 3.9544 -6.0459 0.0091 19 14 1.2778 -6.0905 -0.6767 20 1 1.5162 -7.5144 -1.0244 21 1 0.2424 -6.0073 0.3845 22 1 0.8121 -5.3575 -1.8812 23 6 4.1133 1.2607 -1.4484 24 6 5.4985 1.9369 -1.2976 25 6 5.2643 3.0510 -0.2565 26 6 4.0358 2.6300 0.5688 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 5.9973 -0.1231 1.6963 31 1 5.3132 1.5101 1.8771 32 1 4.6375 0.1539 2.8110 33 1 6.0510 -4.2493 3.6831 34 1 4.3588 -5.4426 2.2444 35 1 4.7977 -5.6291 0.2456 36 1 4.2200 0.2383 -1.8110 37 1 3.4701 1.8412 -2.1099 38 1 5.8201 2.3640 -2.2475 39 1 6.2346 1.2212 -0.9314 40 1 5.0692 3.9977 -0.7602 41 1 6.1354 3.1452 0.3920 42 1 3.2444 3.3725 0.4657 43 1 4.3106 2.5200 1.6179 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875470558.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:56:00 Heat of formation + Delta-G solvation = -99.309182 kcal Electronic energy + Delta-G solvation = -28866.526825 eV Core-core repulsion = 25003.082268 eV Total energy + Delta-G solvation = -3863.444557 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.19505 -40.29853 -38.92291 -37.94878 -37.17067 -35.19455 -34.79840 -31.35745 -30.36004 -29.93388 -28.37562 -27.71889 -26.87192 -24.28574 -23.56253 -22.52881 -21.35126 -20.80779 -20.19782 -19.03838 -18.61300 -18.19869 -17.69087 -17.36222 -16.94289 -16.21943 -15.98469 -15.72641 -15.63150 -15.53342 -14.96049 -14.84000 -14.50584 -14.30806 -13.90814 -13.73617 -13.62202 -13.45456 -13.22917 -13.06471 -12.93225 -12.71325 -12.58171 -12.31749 -12.28224 -12.17762 -12.02156 -11.99602 -11.75156 -11.73241 -11.55158 -11.33405 -11.12606 -10.76224 -10.18070 -9.60826 -9.54849 -9.15653 -8.95893 -6.41172 0.30916 0.99749 1.38093 1.42319 1.47313 1.74572 1.78450 1.84105 1.96342 2.18062 2.27325 2.60542 3.24137 3.25753 3.50454 3.75687 4.10249 4.15034 4.17517 4.21828 4.26334 4.29247 4.36340 4.39754 4.55552 4.57210 4.62822 4.65938 4.73410 4.86433 4.93981 4.96242 5.03418 5.12678 5.23288 5.29245 5.38864 5.41210 5.43560 5.44486 5.75124 5.95778 6.00417 6.57256 6.65940 6.70749 6.88830 7.80086 7.89411 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.012293 B = 0.005327 C = 0.004226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.175999 B = 5255.020023 C = 6623.434511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.324 6.324 3 C 0.455 3.545 4 O -0.537 6.537 5 C 0.182 3.818 6 N -0.616 5.616 7 C 0.061 3.939 8 C 0.592 3.408 9 O -0.549 6.549 10 C -0.466 4.466 11 S 0.067 5.933 12 C -0.206 4.206 13 C -0.175 4.175 14 C 0.092 3.908 15 C -0.467 4.467 16 H 0.081 0.919 17 C 0.004 3.996 18 N -0.792 5.792 19 Si 1.114 2.886 20 H -0.262 1.262 21 H -0.259 1.259 22 H -0.268 1.268 23 C -0.123 4.123 24 C -0.112 4.112 25 C -0.110 4.110 26 C -0.127 4.127 27 H 0.064 0.936 28 H 0.104 0.896 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.126 0.874 32 H 0.061 0.939 33 H 0.170 0.830 34 H 0.115 0.885 35 H 0.287 0.713 36 H 0.054 0.946 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.063 0.937 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.996 12.661 2.553 13.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.237 6.237 3 C 0.299 3.701 4 O -0.428 6.428 5 C 0.095 3.905 6 N -0.352 5.352 7 C -0.082 4.082 8 C 0.388 3.612 9 O -0.430 6.430 10 C -0.584 4.584 11 S 0.326 5.674 12 C -0.339 4.339 13 C -0.208 4.208 14 C 0.082 3.918 15 C -0.498 4.498 16 H 0.099 0.901 17 C -0.215 4.215 18 N -0.415 5.415 19 Si 0.930 3.070 20 H -0.186 1.186 21 H -0.183 1.183 22 H -0.193 1.193 23 C -0.161 4.161 24 C -0.149 4.149 25 C -0.147 4.147 26 C -0.164 4.164 27 H 0.083 0.917 28 H 0.122 0.878 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.144 0.856 32 H 0.080 0.920 33 H 0.187 0.813 34 H 0.133 0.867 35 H 0.100 0.900 36 H 0.073 0.927 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.082 0.918 40 H 0.107 0.893 41 H 0.114 0.886 42 H 0.109 0.891 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.637 12.515 2.154 12.970 hybrid contribution -0.536 -0.303 0.000 0.616 sum 2.101 12.212 2.154 12.577 Atomic orbital electron populations 1.23410 0.77433 1.04217 1.02091 1.87234 1.23012 1.31735 1.81756 1.24664 0.93077 0.81469 0.70900 1.90549 1.67424 1.36843 1.48002 1.21104 0.83917 0.90053 0.95463 1.47559 1.47679 1.04000 1.36003 1.22102 0.92601 1.04230 0.89279 1.16936 0.79557 0.81332 0.83331 1.90678 1.38441 1.83181 1.30725 1.23013 1.19595 0.97991 1.17833 1.82781 1.43020 1.03118 1.38530 1.25984 1.02705 1.01524 1.03736 1.21360 1.00663 0.99808 0.98945 1.18242 0.90596 0.90668 0.92316 1.20769 1.10876 0.97046 1.21097 0.90113 1.28597 1.06049 0.94232 0.92647 1.70518 1.01190 1.40927 1.28877 0.83044 0.70030 0.76181 0.77697 1.18630 1.18317 1.19268 1.22811 0.98921 1.01434 0.92968 1.22313 0.94285 0.97539 1.00791 1.22140 0.96752 0.98677 0.97159 1.22739 1.00326 0.91490 1.01876 0.91682 0.87788 0.91856 0.91140 0.85601 0.92014 0.81252 0.86723 0.89996 0.92747 0.90510 0.89175 0.91817 0.89331 0.88643 0.89099 0.87884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.77 10.56 113.37 1.20 1.96 16 2 O -0.32 -14.01 6.33 -43.49 -0.28 -14.28 16 3 C 0.46 17.71 6.80 71.24 0.48 18.19 16 4 O -0.54 -20.77 15.33 21.96 0.34 -20.43 16 5 C 0.18 6.01 0.73 3.93 0.00 6.02 16 6 N -0.62 -22.65 2.81 -802.75 -2.25 -24.91 16 7 C 0.06 1.74 8.23 127.77 1.05 2.80 16 8 C 0.59 28.14 6.51 86.32 0.56 28.70 16 9 O -0.55 -29.35 10.19 19.46 0.20 -29.15 16 10 C -0.47 -22.86 6.37 24.66 0.16 -22.71 16 11 S 0.07 2.55 17.72 -56.49 -1.00 1.55 16 12 C -0.21 -8.27 11.07 66.64 0.74 -7.53 16 13 C -0.17 -8.33 8.25 22.61 0.19 -8.14 16 14 C 0.09 4.93 5.38 -20.89 -0.11 4.82 16 15 C -0.47 -25.96 8.34 23.33 0.19 -25.76 16 16 H 0.08 4.80 6.35 -2.91 -0.02 4.78 16 17 C 0.00 0.21 5.18 85.37 0.44 0.65 16 18 N -0.79 -41.35 12.47 21.89 0.27 -41.07 16 19 Si 1.11 43.90 30.00 68.60 2.06 45.96 16 20 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 21 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 22 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 23 C -0.12 -3.85 5.75 31.88 0.18 -3.67 16 24 C -0.11 -2.48 6.79 31.67 0.22 -2.27 16 25 C -0.11 -1.88 6.52 31.32 0.20 -1.68 16 26 C -0.13 -2.95 5.28 31.32 0.17 -2.79 16 27 H 0.06 2.04 8.13 -2.38 -0.02 2.02 16 28 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 29 H 0.06 1.98 8.13 -2.39 -0.02 1.96 16 30 H 0.07 2.07 5.87 -14.07 -0.08 1.99 16 31 H 0.13 2.50 4.60 -2.39 -0.01 2.49 16 32 H 0.06 1.83 6.94 -2.47 -0.02 1.81 16 33 H 0.17 5.48 8.06 -2.91 -0.02 5.46 16 34 H 0.11 5.56 6.91 -2.91 -0.02 5.54 16 35 H 0.29 15.45 6.51 -92.71 -0.60 14.85 16 36 H 0.05 2.13 6.83 -2.39 -0.02 2.11 16 37 H 0.08 2.29 8.05 -2.38 -0.02 2.27 16 38 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 40 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.10 1.19 8.10 -2.39 -0.02 1.17 16 42 H 0.09 2.23 6.79 -2.39 -0.02 2.21 16 43 H 0.10 2.05 5.33 -2.38 -0.01 2.04 16 Total: -1.00 -69.04 347.06 6.15 -62.89 By element: Atomic # 1 Polarization: 29.71 SS G_CDS: 1.14 Total: 30.85 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: 5.67 Total: -11.41 kcal Atomic # 7 Polarization: -64.00 SS G_CDS: -1.98 Total: -65.98 kcal Atomic # 8 Polarization: -64.12 SS G_CDS: 0.26 Total: -63.87 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.06 Total: 45.96 kcal Atomic # 16 Polarization: 2.55 SS G_CDS: -1.00 Total: 1.55 kcal Total: -69.04 6.15 -62.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875470558.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.420 kcal (2) G-P(sol) polarization free energy of solvation -69.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds