Wall clock time and date at job start Sat Apr 11 2020 04:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45203 * 109.46972 * 2 1 4 4 C 1.34228 * 117.00031 * 179.97438 * 3 2 1 5 5 O 1.20823 * 120.00173 * 0.02562 * 4 3 2 6 6 C 1.50704 * 120.00179 * 179.97438 * 4 3 2 7 7 H 1.08998 * 110.42990 * 88.67444 * 6 4 3 8 8 C 1.54891 * 110.48526 * 326.13558 * 6 4 3 9 9 C 1.54887 * 102.74725 * 203.37383 * 8 6 4 10 10 C 1.54269 * 104.19266 * 37.94786 * 9 8 6 11 11 C 1.54085 * 106.62217 * 336.27400 * 10 9 8 12 12 H 1.09006 * 110.16137 * 240.88065 * 11 10 9 13 13 N 1.46496 * 110.00646 * 119.38558 * 11 10 9 14 14 C 1.34784 * 120.00070 * 90.84969 * 13 11 10 15 15 O 1.21755 * 119.99923 * 0.02562 * 14 13 11 16 16 C 1.46239 * 119.99861 * 179.97438 * 14 13 11 17 17 S 1.75668 * 125.22978 * 0.03225 * 16 14 13 18 18 C 1.75469 * 92.09128 * 179.97438 * 17 16 14 19 19 C 1.32772 * 111.36367 * 359.97438 * 18 17 16 20 20 C 1.39547 * 125.22601 * 179.72171 * 16 14 13 21 21 C 1.40540 * 123.71346 * 0.02562 * 20 16 14 22 22 H 1.07997 * 120.00344 * 337.27975 * 21 20 16 23 23 C 1.40305 * 119.99954 * 157.28712 * 21 20 16 24 24 N 1.30648 * 120.00202 * 160.57433 * 23 21 20 25 25 Si 1.86798 * 119.99901 * 340.57057 * 23 21 20 26 26 H 1.48500 * 109.47404 * 93.90736 * 25 23 21 27 27 H 1.48505 * 109.47443 * 213.90941 * 25 23 21 28 28 H 1.48496 * 109.47316 * 333.90944 * 25 23 21 29 29 H 1.09001 * 109.47218 * 299.99732 * 1 2 3 30 30 H 1.09002 * 109.47146 * 60.00059 * 1 2 3 31 31 H 1.09000 * 109.47277 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47345 * 119.99793 * 2 1 3 33 33 H 1.09001 * 109.47218 * 240.00268 * 2 1 3 34 34 H 1.08997 * 110.75556 * 321.69164 * 8 6 4 35 35 H 1.09001 * 110.75426 * 84.88107 * 8 6 4 36 36 H 1.09004 * 110.48487 * 156.62022 * 9 8 6 37 37 H 1.08991 * 110.49173 * 279.26353 * 9 8 6 38 38 H 1.08996 * 110.03425 * 95.67199 * 10 9 8 39 39 H 1.09003 * 110.03041 * 217.10088 * 10 9 8 40 40 H 0.96993 * 120.00312 * 270.85620 * 13 11 10 41 41 H 1.07995 * 124.32131 * 180.02562 * 18 17 16 42 42 H 1.07999 * 122.78509 * 180.02562 * 19 18 17 43 43 H 0.97000 * 119.99924 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5868 0.0005 6 6 3.9207 2.9375 0.0000 7 1 4.0438 3.2987 1.0210 8 6 3.0149 3.8985 -0.8095 9 6 3.9927 5.0291 -1.2154 10 6 5.3134 4.2942 -1.5242 11 6 5.2694 2.9636 -0.7484 12 1 6.0928 2.9169 -0.0357 13 7 5.3477 1.8367 -1.6811 14 6 6.5468 1.3180 -2.0123 15 8 7.5650 1.7858 -1.5358 16 6 6.6249 0.1927 -2.9429 17 16 5.2491 -0.5864 -3.7086 18 6 6.2834 -1.7170 -4.5635 19 6 7.5642 -1.5086 -4.2824 20 6 7.8041 -0.4232 -3.3640 21 6 9.0844 -0.0310 -2.9373 22 1 9.2461 0.9689 -2.5627 23 6 10.1528 -0.9385 -2.9982 24 7 11.3836 -0.5011 -2.9741 25 14 9.8152 -2.7721 -3.1136 26 1 9.8154 -3.1867 -4.5395 27 1 10.8710 -3.5169 -2.3814 28 1 8.4910 -3.0706 -2.5116 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 2.6136 3.3996 -1.6917 35 1 2.2089 4.2862 -0.1865 36 1 3.6287 5.5482 -2.1020 37 1 4.1294 5.7293 -0.3914 38 1 5.3923 4.1017 -2.5942 39 1 6.1607 4.8921 -1.1885 40 1 4.5366 1.4639 -2.0605 41 1 5.9242 -2.4839 -5.2337 42 1 8.3604 -2.1004 -4.7091 43 1 12.1222 -1.1286 -3.0158 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875776335.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:56:23 Heat of formation + Delta-G solvation = -103.180390 kcal Electronic energy + Delta-G solvation = -27545.099386 eV Core-core repulsion = 23681.486961 eV Total energy + Delta-G solvation = -3863.612425 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.75381 -38.74304 -37.25631 -36.34170 -35.93337 -33.30594 -32.61312 -31.83932 -29.46672 -29.25897 -27.88201 -26.00670 -23.79098 -22.27731 -21.85956 -20.80674 -20.65007 -19.42472 -18.90125 -17.89136 -17.37814 -16.56749 -16.38137 -15.88817 -15.49997 -15.29367 -14.66157 -14.26829 -14.08747 -14.01320 -13.64920 -13.38037 -13.27963 -13.17980 -12.89034 -12.41272 -12.16698 -12.03980 -12.01701 -11.69159 -11.56303 -11.46040 -11.33421 -11.18858 -11.09957 -10.92493 -10.82155 -10.54123 -10.49768 -10.40446 -10.09609 -9.94741 -9.57330 -9.36780 -8.40821 -8.15197 -7.59958 -7.32190 -7.14685 -4.49109 1.94651 2.35628 2.68166 2.88247 2.89005 3.08693 3.13575 3.53287 3.57946 3.81022 4.09154 4.33064 4.40978 4.59310 4.76847 4.84064 4.89855 5.08155 5.19851 5.20391 5.29937 5.38219 5.46092 5.61271 5.64165 5.65592 5.73262 5.78704 5.80910 5.86430 5.98143 6.08930 6.17694 6.31346 6.43707 6.51791 6.71351 6.84913 6.94257 7.20098 7.41166 7.70751 7.90901 8.29582 8.45488 8.56886 8.85271 9.66878 9.83253 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.013517 B = 0.004074 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.028173 B = 6871.487542 C = 8007.693230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.361 6.361 4 C 0.456 3.544 5 O -0.473 6.473 6 C -0.096 4.096 7 H 0.122 0.878 8 C -0.111 4.111 9 C -0.123 4.123 10 C -0.136 4.136 11 C 0.165 3.835 12 H 0.098 0.902 13 N -0.734 5.734 14 C 0.607 3.393 15 O -0.559 6.559 16 C -0.422 4.422 17 S -0.021 6.021 18 C -0.179 4.179 19 C -0.166 4.166 20 C 0.107 3.893 21 C -0.363 4.363 22 H 0.124 0.876 23 C 0.079 3.921 24 N -0.769 5.769 25 Si 0.909 3.091 26 H -0.265 1.265 27 H -0.282 1.282 28 H -0.241 1.241 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.384 0.616 41 H 0.143 0.857 42 H 0.125 0.875 43 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.285 3.736 3.336 17.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.279 6.279 4 C 0.297 3.703 5 O -0.357 6.357 6 C -0.116 4.116 7 H 0.140 0.860 8 C -0.149 4.149 9 C -0.161 4.161 10 C -0.175 4.175 11 C 0.059 3.941 12 H 0.116 0.884 13 N -0.387 5.387 14 C 0.404 3.596 15 O -0.441 6.441 16 C -0.541 4.541 17 S 0.236 5.764 18 C -0.313 4.313 19 C -0.200 4.200 20 C 0.096 3.904 21 C -0.393 4.393 22 H 0.142 0.858 23 C -0.146 4.146 24 N -0.391 5.391 25 Si 0.734 3.266 26 H -0.192 1.192 27 H -0.209 1.209 28 H -0.164 1.164 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.218 0.782 41 H 0.160 0.840 42 H 0.142 0.858 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.592 3.973 3.756 18.422 hybrid contribution 1.133 -1.568 -0.360 1.968 sum -16.459 2.405 3.395 16.976 Atomic orbital electron populations 1.21784 0.92868 1.02801 1.03252 1.23000 0.95057 0.80550 1.02875 1.86493 1.24837 1.32087 1.84483 1.23525 0.80575 0.92558 0.73646 1.90827 1.59892 1.42479 1.42501 1.22355 0.96569 0.89540 1.03087 0.86041 1.22500 0.97114 0.95573 0.99706 1.22372 0.95108 0.97212 1.01416 1.22718 0.97479 0.95641 1.01645 1.21217 0.94595 0.86772 0.91565 0.88433 1.45804 1.08943 1.35234 1.48743 1.16669 0.81927 0.81243 0.79804 1.90677 1.34363 1.62853 1.56235 1.22367 0.93018 1.15981 1.22721 1.82760 1.13145 1.32354 1.48122 1.24921 0.97070 1.03990 1.05351 1.21490 0.95954 1.00793 1.01713 1.17862 0.93016 0.89249 0.90238 1.19841 0.88800 1.01754 1.28879 0.85809 1.26543 0.94376 1.02697 0.90955 1.69610 1.00256 1.39053 1.30229 0.86473 0.80365 0.80757 0.78960 1.19170 1.20914 1.16425 0.91733 0.91525 0.90416 0.91434 0.90920 0.90762 0.90378 0.91208 0.91274 0.90625 0.90825 0.78180 0.83959 0.85792 0.89747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.29 37.16 0.38 -0.79 16 2 C 0.06 0.66 6.19 37.16 0.23 0.89 16 3 O -0.36 -4.58 9.66 -39.25 -0.38 -4.96 16 4 C 0.46 6.80 6.28 36.01 0.23 7.02 16 5 O -0.47 -9.04 14.51 -18.75 -0.27 -9.31 16 6 C -0.10 -1.21 3.34 -90.11 -0.30 -1.51 16 7 H 0.12 1.26 8.14 -51.93 -0.42 0.83 16 8 C -0.11 -1.12 5.89 -24.74 -0.15 -1.27 16 9 C -0.12 -1.23 6.83 -25.07 -0.17 -1.40 16 10 C -0.14 -1.88 6.60 -25.50 -0.17 -2.05 16 11 C 0.17 2.69 3.01 -66.71 -0.20 2.49 16 12 H 0.10 1.80 7.48 -51.93 -0.39 1.41 16 13 N -0.73 -14.75 3.27 -54.05 -0.18 -14.93 16 14 C 0.61 15.33 7.76 -13.04 -0.10 15.22 16 15 O -0.56 -15.82 14.05 5.14 0.07 -15.75 16 16 C -0.42 -10.84 6.51 -35.88 -0.23 -11.07 16 17 S -0.02 -0.45 22.25 -107.50 -2.39 -2.84 16 18 C -0.18 -3.73 11.07 28.86 0.32 -3.41 16 19 C -0.17 -3.89 7.61 -39.12 -0.30 -4.18 16 20 C 0.11 2.86 5.31 -106.21 -0.56 2.30 16 21 C -0.36 -10.33 9.04 -37.94 -0.34 -10.67 16 22 H 0.12 3.92 6.20 -52.49 -0.33 3.59 16 23 C 0.08 2.06 5.47 -17.28 -0.09 1.97 16 24 N -0.77 -20.16 13.92 55.57 0.77 -19.38 16 25 Si 0.91 20.04 24.52 -169.99 -4.17 15.87 16 26 H -0.27 -5.43 6.59 56.52 0.37 -5.06 16 27 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 28 H -0.24 -5.55 6.78 56.52 0.38 -5.17 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.77 8.13 -51.93 -0.42 0.34 16 33 H 0.07 0.88 8.13 -51.93 -0.42 0.46 16 34 H 0.07 0.80 8.05 -51.93 -0.42 0.38 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 1.18 7.92 -51.93 -0.41 0.77 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.38 7.39 6.33 -40.82 -0.26 7.13 16 41 H 0.14 2.41 8.06 -52.49 -0.42 1.99 16 42 H 0.12 2.75 4.39 -52.49 -0.23 2.52 16 43 H 0.29 6.75 8.29 -40.82 -0.34 6.41 16 LS Contribution 361.96 15.07 5.45 5.45 Total: -1.00 -32.48 361.96 -8.42 -40.90 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -5.86 Total: 11.40 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -1.46 Total: -6.46 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 0.60 Total: -34.31 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -0.58 Total: -30.02 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -4.17 Total: 15.87 kcal Atomic # 16 Polarization: -0.45 SS G_CDS: -2.39 Total: -2.84 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.48 -8.42 -40.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875776335.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.284 kcal (2) G-P(sol) polarization free energy of solvation -32.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds