Wall clock time and date at job start Sat Apr 11 2020 04:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47288 * 261.76228 * 3 2 1 5 5 H 1.09000 * 109.47001 * 305.48228 * 4 3 2 6 6 C 1.52997 * 109.47314 * 185.48666 * 4 3 2 7 7 O 1.42908 * 109.46890 * 304.99571 * 6 4 3 8 8 C 1.42904 * 113.99687 * 179.97438 * 7 6 4 9 9 N 1.46499 * 109.47346 * 65.48360 * 4 3 2 10 10 S 1.65599 * 120.00098 * 215.02653 * 9 4 3 11 11 O 1.42109 * 106.39865 * 309.84255 * 10 9 4 12 12 O 1.42097 * 106.40262 * 176.92109 * 10 9 4 13 13 C 1.76199 * 107.22134 * 63.37730 * 10 9 4 14 14 C 1.38236 * 119.99681 * 84.81103 * 13 10 9 15 15 C 1.38230 * 120.00105 * 180.28017 * 14 13 10 16 16 C 1.38241 * 120.00034 * 359.46628 * 15 14 13 17 17 C 1.50691 * 120.00172 * 180.28129 * 16 15 14 18 18 C 1.50702 * 109.47187 * 270.27505 * 17 16 15 19 19 H 1.08000 * 120.00046 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99967 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00029 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99799 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47071 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46928 * 119.99902 * 22 20 18 25 25 H 1.48494 * 109.47100 * 239.99911 * 22 20 18 26 26 C 1.38237 * 119.99409 * 0.55746 * 16 15 14 27 27 C 1.38228 * 120.00300 * 264.83601 * 13 10 9 28 28 H 4.44645 * 5.63311 * 179.97438 * 4 1 2 29 29 H 1.09002 * 109.47440 * 141.75456 * 3 2 1 30 30 H 1.09005 * 109.47349 * 21.76401 * 3 2 1 31 31 H 1.08999 * 109.47467 * 64.99311 * 6 4 3 32 32 H 1.08997 * 109.47722 * 184.99861 * 6 4 3 33 33 H 1.09003 * 109.47151 * 60.00576 * 8 7 6 34 34 H 1.09006 * 109.46403 * 180.02562 * 8 7 6 35 35 H 1.08991 * 109.47500 * 300.00156 * 8 7 6 36 36 H 0.96995 * 119.99589 * 35.02157 * 9 4 3 37 37 H 1.08006 * 120.00109 * 0.02562 * 14 13 10 38 38 H 1.08006 * 120.00331 * 179.72391 * 15 14 13 39 39 H 1.09001 * 109.47486 * 30.27593 * 17 16 15 40 40 H 1.09005 * 109.47084 * 150.27579 * 17 16 15 41 41 H 0.96999 * 119.99798 * 179.97438 * 21 20 18 42 42 H 1.08003 * 119.99466 * 179.72674 * 26 16 15 43 43 H 1.08000 * 120.00383 * 359.97438 * 27 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1559 0.2076 1.4276 5 1 2.7142 1.1131 1.8435 6 6 4.6796 0.3451 1.4100 7 8 5.2528 -0.7908 0.7592 8 6 6.6798 -0.7612 0.6883 9 7 2.7789 -0.9430 2.2524 10 16 2.3816 -0.7252 3.8452 11 8 3.4264 0.0500 4.4170 12 8 1.9993 -2.0006 4.3414 13 6 0.9351 0.2800 3.8893 14 6 -0.3134 -0.2997 3.7624 15 6 -1.4480 0.4895 3.7912 16 6 -1.3347 1.8571 3.9580 17 6 -2.5718 2.7166 3.9958 18 6 -2.9158 3.1635 2.5983 19 1 -2.2999 2.8562 1.7660 20 6 -4.0163 3.9656 2.3823 21 7 -4.7661 4.3403 3.3957 22 14 -4.4423 4.5202 0.6500 23 1 -3.4488 3.9671 -0.3052 24 1 -5.7983 4.0312 0.2932 25 1 -4.4181 6.0035 0.5851 26 6 -0.0861 2.4367 4.0845 27 6 1.0488 1.6481 4.0504 28 1 -1.0500 0.0002 -0.0001 29 1 3.0090 0.8079 -0.6362 30 1 3.0098 -0.9536 -0.3811 31 1 4.9565 1.2509 0.8707 32 1 5.0510 0.4034 2.4331 33 1 7.0930 -0.7256 1.6964 34 1 7.0369 -1.6571 0.1803 35 1 6.9978 0.1216 0.1339 36 1 2.7619 -1.8322 1.8655 37 1 -0.4023 -1.3687 3.6366 38 1 -2.4232 0.0371 3.6875 39 1 -3.4012 2.1419 4.4079 40 1 -2.3885 3.5900 4.6217 41 1 -5.5400 4.9049 3.2438 42 1 0.0027 3.5057 4.2104 43 1 2.0242 2.1011 4.1496 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885329880.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:56:32 Heat of formation + Delta-G solvation = -53.450121 kcal Electronic energy + Delta-G solvation = -27081.362064 eV Core-core repulsion = 23219.906105 eV Total energy + Delta-G solvation = -3861.455958 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -38.85004 -38.71885 -37.10813 -36.29393 -35.74972 -33.68923 -33.01393 -31.56527 -30.58046 -30.11872 -27.61808 -27.43453 -25.99812 -23.74081 -22.39338 -21.82220 -20.91215 -19.54095 -18.37023 -17.85737 -17.22751 -16.75645 -16.46936 -16.16532 -15.76246 -15.57719 -15.11343 -14.98016 -14.38053 -14.33909 -13.94965 -13.83222 -13.76248 -13.10999 -12.90313 -12.84403 -12.52933 -12.28600 -12.18872 -12.01982 -11.91006 -11.76456 -11.66760 -11.52611 -11.50153 -10.95070 -10.91969 -10.57301 -10.49583 -10.26605 -10.05665 -9.86747 -9.82525 -9.65135 -9.54397 -8.58869 -8.55349 -8.37499 -6.19204 -4.24230 0.52855 1.34495 1.80729 2.92816 2.98110 3.07423 3.19870 3.28258 3.31768 3.50602 3.77700 4.12518 4.33279 4.34707 4.48433 4.68248 4.87244 4.92046 5.04844 5.10543 5.15120 5.15321 5.22703 5.23838 5.31886 5.40488 5.47465 5.66120 5.72481 5.81133 5.91561 5.94293 6.20548 6.25756 6.33713 6.51452 6.84124 6.85737 6.89356 6.92320 7.29258 7.43777 7.58908 7.75701 7.79310 8.11345 8.80699 9.40548 10.90965 Molecular weight = 337.12amu Principal moments of inertia in cm(-1) A = 0.014460 B = 0.003479 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.848175 B = 8045.519777 C = 9119.490040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.207 4.207 3 C -0.006 4.006 4 C 0.166 3.834 5 H 0.104 0.896 6 C 0.040 3.960 7 O -0.385 6.385 8 C 0.030 3.970 9 N -1.106 6.106 10 S 2.696 3.304 11 O -0.967 6.967 12 O -0.967 6.967 13 C -0.702 4.702 14 C -0.016 4.016 15 C -0.145 4.145 16 C 0.028 3.972 17 C 0.038 3.962 18 C -0.515 4.515 19 H 0.060 0.940 20 C 0.060 3.940 21 N -0.891 5.891 22 Si 0.897 3.103 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.282 1.282 26 C -0.145 4.145 27 C -0.027 4.027 28 H 0.215 0.785 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.042 0.958 34 H 0.084 0.916 35 H 0.041 0.959 36 H 0.420 0.580 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.263 0.737 42 H 0.128 0.872 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.389 -8.894 -5.649 21.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.208 4.208 3 C -0.044 4.044 4 C 0.058 3.942 5 H 0.122 0.878 6 C -0.038 4.038 7 O -0.304 6.304 8 C -0.066 4.066 9 N -0.864 5.864 10 S 2.788 3.212 11 O -0.957 6.957 12 O -0.957 6.957 13 C -0.791 4.791 14 C -0.036 4.036 15 C -0.164 4.164 16 C 0.028 3.972 17 C 0.002 3.998 18 C -0.553 4.553 19 H 0.078 0.922 20 C -0.142 4.142 21 N -0.529 5.529 22 Si 0.724 3.276 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.164 4.164 27 C -0.047 4.047 28 H 0.232 0.768 29 H 0.114 0.886 30 H 0.117 0.883 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.060 0.940 34 H 0.103 0.897 35 H 0.059 0.941 36 H 0.255 0.745 37 H 0.144 0.856 38 H 0.145 0.855 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.073 0.927 42 H 0.145 0.855 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 18.605 -9.107 -4.879 21.281 hybrid contribution -1.035 0.722 -1.279 1.797 sum 17.570 -8.386 -6.158 20.419 Atomic orbital electron populations 1.25028 0.96048 0.99750 0.98796 1.22743 0.94162 1.01725 1.02121 1.18833 0.85260 1.04508 0.95804 1.20809 0.92385 0.89060 0.91943 0.87849 1.23214 0.93355 0.88952 0.98329 1.87849 1.19870 1.43395 1.79253 1.22748 0.81183 1.01983 1.00703 1.55519 1.84541 1.15766 1.30594 1.01622 0.74008 0.73469 0.72063 1.93545 1.54488 1.72264 1.75403 1.93565 1.84165 1.40379 1.77588 1.30271 1.16880 1.08414 1.23582 1.20702 0.91200 0.99202 0.92453 1.21209 0.98338 0.93911 1.02897 1.21086 0.97020 0.94177 0.84942 1.18544 0.88894 0.94054 0.98354 1.20982 1.11187 1.31211 0.91878 0.92224 1.25010 0.96035 0.95862 0.97276 1.69957 1.16784 1.35785 1.30390 0.86453 0.78394 0.78523 0.84204 1.19583 1.20830 1.20838 1.21222 0.91983 1.00167 1.02986 1.20780 0.99256 0.91408 0.93207 0.76788 0.88588 0.88261 0.91896 0.91066 0.93966 0.89711 0.94087 0.74496 0.85576 0.85464 0.94745 0.94765 0.92681 0.85452 0.85279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.45 19.25 29.55 0.57 -1.88 16 2 C -0.21 -2.60 13.07 -37.12 -0.49 -3.09 16 3 C -0.01 -0.06 5.02 -29.52 -0.15 -0.21 16 4 C 0.17 1.65 2.55 -67.93 -0.17 1.48 16 5 H 0.10 1.05 7.40 -51.93 -0.38 0.66 16 6 C 0.04 0.35 5.77 37.16 0.21 0.57 16 7 O -0.38 -3.49 9.88 -35.23 -0.35 -3.84 16 8 C 0.03 0.20 11.01 101.05 1.11 1.32 16 9 N -1.11 -12.11 5.13 -4.89 -0.03 -12.13 16 10 S 2.70 37.76 5.65 -107.50 -0.61 37.16 16 11 O -0.97 -14.99 16.41 -57.17 -0.94 -15.92 16 12 O -0.97 -15.91 17.42 -57.17 -1.00 -16.91 16 13 C -0.70 -10.97 5.70 -39.59 -0.23 -11.20 16 14 C -0.02 -0.26 9.52 -39.58 -0.38 -0.64 16 15 C -0.14 -2.64 9.70 -39.58 -0.38 -3.03 16 16 C 0.03 0.57 5.07 -104.63 -0.53 0.04 16 17 C 0.04 0.92 5.10 -29.04 -0.15 0.78 16 18 C -0.51 -13.52 9.09 -34.44 -0.31 -13.83 16 19 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -25.24 13.29 55.43 0.74 -24.50 16 22 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 23 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 C -0.14 -2.64 9.70 -39.58 -0.38 -3.02 16 27 C -0.03 -0.43 9.16 -39.59 -0.36 -0.79 16 28 H 0.22 2.71 7.80 -54.09 -0.42 2.28 16 29 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.10 0.86 7.75 -51.93 -0.40 0.46 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.70 7.58 -51.93 -0.39 0.31 16 33 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.42 3.97 8.84 -34.47 -0.30 3.67 16 37 H 0.13 1.80 7.74 -52.48 -0.41 1.40 16 38 H 0.13 2.21 8.06 -52.48 -0.42 1.79 16 39 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 40 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 41 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.13 2.21 8.06 -52.48 -0.42 1.78 16 43 H 0.13 1.75 7.51 -52.49 -0.39 1.36 16 LS Contribution 387.48 15.07 5.84 5.84 Total: -1.00 -32.88 387.48 -9.14 -42.02 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -6.05 Total: 4.72 kcal Atomic # 6 Polarization: -30.24 SS G_CDS: -1.73 Total: -31.97 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 0.71 Total: -36.64 kcal Atomic # 8 Polarization: -34.39 SS G_CDS: -2.28 Total: -36.67 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: 37.76 SS G_CDS: -0.61 Total: 37.16 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.88 -9.14 -42.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885329880.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.434 kcal (2) G-P(sol) polarization free energy of solvation -32.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds