Wall clock time and date at job start Sat Apr 11 2020 04:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47346 * 2 1 4 4 H 1.09005 * 109.47033 * 305.00007 * 3 2 1 5 5 C 1.52997 * 109.47264 * 184.99930 * 3 2 1 6 6 N 1.46505 * 109.46985 * 184.99674 * 5 3 2 7 7 C 1.34774 * 119.99861 * 180.02562 * 6 5 3 8 8 O 1.21286 * 120.00177 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.99902 * 180.02562 * 7 6 5 10 10 N 1.46500 * 109.47159 * 180.02562 * 9 7 6 11 11 C 1.34770 * 120.00354 * 180.02562 * 10 9 7 12 12 O 1.21575 * 120.00101 * 0.02562 * 11 10 9 13 13 C 1.47724 * 120.00295 * 179.97438 * 11 10 9 14 14 C 1.39642 * 120.11876 * 359.72379 * 13 11 10 15 15 C 1.37839 * 119.87915 * 179.73968 * 14 13 11 16 16 C 1.38652 * 120.12174 * 0.51711 * 15 14 13 17 17 F 1.35101 * 119.88307 * 179.74420 * 16 15 14 18 18 C 1.38654 * 120.23628 * 359.75961 * 16 15 14 19 19 C 1.37838 * 120.11914 * 359.97438 * 18 16 15 20 20 N 1.46498 * 109.46890 * 64.99929 * 3 2 1 21 21 C 1.36935 * 120.00239 * 275.00034 * 20 3 2 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 3 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 3 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47364 * 179.72253 * 25 23 21 27 27 H 1.48508 * 109.46883 * 299.72375 * 25 23 21 28 28 H 1.48497 * 109.46870 * 59.72186 * 25 23 21 29 29 H 1.09005 * 109.47235 * 300.00051 * 1 2 3 30 30 H 1.08994 * 109.47808 * 59.99715 * 1 2 3 31 31 H 1.08999 * 109.47447 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47235 * 239.99949 * 2 1 3 33 33 H 1.09002 * 109.47057 * 119.99985 * 2 1 3 34 34 H 1.08996 * 109.47726 * 304.99907 * 5 3 2 35 35 H 1.09001 * 109.46766 * 65.00647 * 5 3 2 36 36 H 0.96994 * 120.00104 * 0.02562 * 6 5 3 37 37 H 1.08997 * 109.47378 * 299.99789 * 9 7 6 38 38 H 1.09000 * 109.47199 * 60.00559 * 9 7 6 39 39 H 0.97005 * 120.00203 * 0.02562 * 10 9 7 40 40 H 1.08004 * 120.06279 * 359.97438 * 14 13 11 41 41 H 1.08003 * 119.93926 * 180.25578 * 15 14 13 42 42 H 1.08003 * 119.94221 * 179.97438 * 18 16 15 43 43 H 1.08003 * 120.06090 * 179.97438 * 19 18 16 44 44 H 0.97004 * 119.99747 * 95.00774 * 20 3 2 45 45 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0630 -0.0869 8 8 6.1633 2.1485 -0.2592 9 6 5.8981 4.4748 0.0368 10 7 7.3581 4.4767 -0.0849 11 6 8.0395 5.6366 -0.0044 12 8 7.4427 6.6815 0.1696 13 6 9.5117 5.6385 -0.1266 14 6 10.2003 4.4391 -0.3197 15 6 11.5735 4.4472 -0.4384 16 6 12.2721 5.6420 -0.3557 17 9 13.6185 5.6437 -0.4675 18 6 11.5938 6.8351 -0.1583 19 6 10.2202 6.8391 -0.0437 20 7 1.6524 2.0974 1.2518 21 6 0.4156 2.6734 1.3688 22 1 -0.2743 2.6446 0.5384 23 6 0.0486 3.2945 2.5548 24 7 0.8874 3.3249 3.5687 25 14 -1.6388 4.0796 2.7147 26 1 -1.7858 4.6654 4.0714 27 1 -1.7857 5.1494 1.6951 28 1 -2.6865 3.0484 2.5046 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9954 0.8311 0.6659 35 1 3.8498 1.0377 -1.0961 36 1 3.4410 3.5483 0.1315 37 1 5.4672 5.0884 -0.7542 38 1 5.6136 4.8809 1.0075 39 1 7.8344 3.6431 -0.2234 40 1 9.6576 3.5073 -0.3797 41 1 12.1068 3.5206 -0.5919 42 1 12.1428 7.7630 -0.0942 43 1 9.6929 7.7690 0.1104 44 1 2.2720 2.1231 1.9978 45 1 1.7635 2.9169 3.4858 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495103828.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 04:59:37 Heat of formation + Delta-G solvation = -107.371807 kcal Electronic energy + Delta-G solvation = -27795.869067 eV Core-core repulsion = 23533.987559 eV Total energy + Delta-G solvation = -4261.881509 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.04157 -41.57000 -40.68100 -39.16942 -38.44668 -35.83196 -35.41769 -34.34685 -32.38131 -32.06973 -31.36674 -30.06208 -28.22585 -25.48643 -24.76291 -24.12265 -23.75498 -21.85319 -21.71108 -21.37918 -19.72110 -19.39268 -18.63681 -17.96136 -17.55556 -17.18537 -17.16636 -16.72693 -16.51497 -16.41300 -16.27207 -15.76731 -15.73566 -15.46392 -15.06096 -14.69221 -14.66065 -14.45284 -14.29722 -14.19248 -13.94557 -13.80785 -13.49765 -13.23111 -13.17487 -12.72195 -12.56662 -12.11565 -12.10335 -11.99895 -11.82277 -11.53727 -11.32510 -11.19639 -11.14689 -10.85174 -10.45833 -10.26114 -10.14114 -9.85815 -9.05880 -8.25078 -5.20932 -0.45661 0.13618 1.40666 1.59716 1.62778 1.64691 1.70423 1.85806 2.34898 2.61382 2.75988 3.07256 3.47001 3.50869 3.57951 3.65902 3.75923 3.80485 3.86658 4.12405 4.19145 4.21848 4.29507 4.30788 4.41469 4.50477 4.66457 4.70171 4.78919 4.83588 4.97347 5.00772 5.03529 5.05400 5.10056 5.14537 5.16225 5.35815 5.48788 5.65894 5.68535 5.74767 6.30303 6.39526 6.60332 6.97142 7.01477 7.16711 8.06895 8.18518 9.25440 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.017778 B = 0.001995 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.589146 B =14028.721943 C =15239.428787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.168 3.832 4 H 0.058 0.942 5 C 0.123 3.877 6 N -0.706 5.706 7 C 0.513 3.487 8 O -0.572 6.572 9 C 0.103 3.897 10 N -0.705 5.705 11 C 0.561 3.439 12 O -0.571 6.571 13 C -0.160 4.160 14 C -0.051 4.051 15 C -0.157 4.157 16 C 0.117 3.883 17 F -0.138 7.138 18 C -0.158 4.158 19 C -0.036 4.036 20 N -0.739 5.739 21 C -0.303 4.303 22 H 0.072 0.928 23 C -0.105 4.105 24 N -0.981 5.981 25 Si 1.116 2.884 26 H -0.303 1.303 27 H -0.279 1.279 28 H -0.283 1.283 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.044 0.956 34 H 0.055 0.945 35 H 0.086 0.914 36 H 0.412 0.588 37 H 0.114 0.886 38 H 0.101 0.899 39 H 0.417 0.583 40 H 0.155 0.845 41 H 0.166 0.834 42 H 0.163 0.837 43 H 0.146 0.854 44 H 0.359 0.641 45 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.563 1.191 -11.901 22.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.060 3.940 4 H 0.076 0.924 5 C -0.002 4.002 6 N -0.356 5.356 7 C 0.299 3.701 8 O -0.453 6.453 9 C -0.024 4.024 10 N -0.360 5.360 11 C 0.350 3.650 12 O -0.452 6.452 13 C -0.163 4.163 14 C -0.069 4.069 15 C -0.175 4.175 16 C 0.098 3.902 17 F -0.117 7.117 18 C -0.177 4.177 19 C -0.055 4.055 20 N -0.381 5.381 21 C -0.434 4.434 22 H 0.089 0.911 23 C -0.296 4.296 24 N -0.630 5.630 25 Si 0.943 3.057 26 H -0.229 1.229 27 H -0.205 1.205 28 H -0.209 1.209 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.249 0.751 37 H 0.131 0.869 38 H 0.119 0.881 39 H 0.257 0.743 40 H 0.172 0.828 41 H 0.183 0.817 42 H 0.181 0.819 43 H 0.164 0.836 44 H 0.191 0.809 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 18.508 2.066 -11.101 21.680 hybrid contribution 1.109 -0.949 -0.384 1.509 sum 19.617 1.117 -11.485 22.759 Atomic orbital electron populations 1.21692 0.96090 1.00520 1.01743 1.21985 0.96582 0.97319 1.01102 1.20672 0.91096 0.93159 0.89122 0.92425 1.21619 0.94077 0.82471 1.01985 1.45886 1.07029 1.10998 1.71732 1.20572 0.82648 0.90926 0.75974 1.90645 1.56267 1.46862 1.51476 1.21060 0.81873 0.93917 1.05564 1.45546 1.06522 1.10567 1.73393 1.18455 0.87806 0.82913 0.75822 1.90795 1.71001 1.32552 1.50809 1.19900 0.91711 0.95800 1.08864 1.21397 0.93912 0.97583 0.94041 1.21347 0.94406 0.98327 1.03458 1.18179 0.77015 0.95307 0.99743 1.91527 1.29631 1.97418 1.93078 1.21328 0.94312 0.98463 1.03561 1.21223 0.93193 0.98007 0.93064 1.42581 1.15791 1.67272 1.12467 1.20208 0.93288 1.29702 1.00233 0.91058 1.26788 1.08003 1.02126 0.92722 1.70999 1.08681 1.49972 1.33304 0.82740 0.71823 0.75875 0.75222 1.22941 1.20477 1.20944 0.93467 0.93262 0.92880 0.90424 0.93673 0.92650 0.89588 0.75108 0.86866 0.88085 0.74320 0.82782 0.81693 0.81898 0.83582 0.80911 0.94529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.70 9.18 71.98 0.66 -4.03 16 2 C -0.13 -3.97 5.61 30.59 0.17 -3.80 16 3 C 0.17 5.58 2.59 44.99 0.12 5.69 16 4 H 0.06 1.93 8.08 -2.38 -0.02 1.91 16 5 C 0.12 3.56 5.23 86.38 0.45 4.01 16 6 N -0.71 -19.90 5.39 -463.06 -2.49 -22.39 16 7 C 0.51 13.90 7.90 87.66 0.69 14.59 16 8 O -0.57 -17.61 15.67 -3.05 -0.05 -17.66 16 9 C 0.10 2.44 6.15 85.63 0.53 2.97 16 10 N -0.71 -15.63 5.48 -469.83 -2.57 -18.20 16 11 C 0.56 13.56 7.77 86.75 0.67 14.23 16 12 O -0.57 -17.72 16.34 -3.95 -0.06 -17.79 16 13 C -0.16 -3.00 5.87 -20.09 -0.12 -3.12 16 14 C -0.05 -0.72 9.54 22.51 0.21 -0.50 16 15 C -0.16 -1.96 10.01 22.27 0.22 -1.73 16 16 C 0.12 1.68 7.31 22.47 0.16 1.84 16 17 F -0.14 -2.14 17.26 44.97 0.78 -1.36 16 18 C -0.16 -2.16 10.01 22.27 0.22 -1.93 16 19 C -0.04 -0.61 9.59 22.52 0.22 -0.39 16 20 N -0.74 -31.73 4.50 -322.94 -1.45 -33.18 16 21 C -0.30 -14.91 7.75 84.03 0.65 -14.26 16 22 H 0.07 3.43 7.32 -2.91 -0.02 3.41 16 23 C -0.10 -5.65 5.50 84.86 0.47 -5.18 16 24 N -0.98 -58.10 13.70 21.65 0.30 -57.81 16 25 Si 1.12 49.65 29.92 68.60 2.05 51.70 16 26 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 27 H -0.28 -11.48 7.11 99.48 0.71 -10.78 16 28 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 29 H 0.05 1.92 5.99 -2.38 -0.01 1.90 16 30 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 33 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.41 12.10 8.14 -92.71 -0.75 11.35 16 37 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.10 2.52 8.14 -2.39 -0.02 2.51 16 39 H 0.42 8.18 5.47 -92.70 -0.51 7.67 16 40 H 0.15 1.66 6.40 -2.91 -0.02 1.65 16 41 H 0.17 1.29 8.06 -2.91 -0.02 1.27 16 42 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 43 H 0.15 2.48 7.65 -2.91 -0.02 2.46 16 44 H 0.36 16.78 6.63 -92.71 -0.61 16.17 16 45 H 0.24 14.37 6.77 -92.71 -0.63 13.74 16 Total: -1.00 -66.72 383.30 1.14 -65.57 By element: Atomic # 1 Polarization: 43.40 SS G_CDS: -0.68 Total: 42.72 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: 5.34 Total: 8.39 kcal Atomic # 7 Polarization: -125.35 SS G_CDS: -6.23 Total: -131.58 kcal Atomic # 8 Polarization: -35.34 SS G_CDS: -0.11 Total: -35.45 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.78 Total: -1.36 kcal Atomic # 14 Polarization: 49.65 SS G_CDS: 2.05 Total: 51.70 kcal Total: -66.72 1.14 -65.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495103828.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.797 kcal (2) G-P(sol) polarization free energy of solvation -66.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds