Wall clock time and date at job start Sat Apr 11 2020 05:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46959 * 2 1 4 4 N 1.46502 * 109.47228 * 119.99817 * 2 1 3 5 5 C 1.46500 * 119.99853 * 298.88714 * 4 2 1 6 6 C 1.53000 * 109.46996 * 92.57320 * 5 4 2 7 7 N 1.46500 * 109.47238 * 179.97438 * 6 5 4 8 8 C 1.46509 * 119.99495 * 89.99864 * 7 6 5 9 9 C 1.36927 * 120.00261 * 270.00008 * 7 6 5 10 10 H 1.07998 * 120.00712 * 315.55121 * 9 7 6 11 11 C 1.38820 * 119.99882 * 135.54725 * 9 7 6 12 12 N 1.31624 * 119.99865 * 169.38122 * 11 9 7 13 13 Si 1.86798 * 120.00096 * 349.38638 * 11 9 7 14 14 H 1.48504 * 109.47330 * 95.44624 * 13 11 9 15 15 H 1.48497 * 109.47279 * 215.44730 * 13 11 9 16 16 H 1.48498 * 109.47133 * 335.44700 * 13 11 9 17 17 C 1.34777 * 119.99733 * 118.88783 * 4 2 1 18 18 O 1.21626 * 120.00374 * 3.56961 * 17 4 2 19 19 C 1.47264 * 119.99489 * 183.57846 * 17 4 2 20 20 C 1.35207 * 123.13834 * 182.01051 * 19 17 4 21 21 S 1.70945 * 108.82923 * 179.97438 * 20 19 17 22 22 C 1.70772 * 91.12736 * 359.97438 * 21 20 19 23 23 C 1.50696 * 124.72036 * 180.02562 * 22 21 20 24 24 C 1.52999 * 117.49888 * 8.60177 * 23 22 21 25 25 C 1.52998 * 117.50018 * 299.97810 * 23 22 21 26 26 N 1.28649 * 110.56203 * 359.76448 * 22 21 20 27 27 H 1.09000 * 109.47671 * 299.99870 * 1 2 3 28 28 H 1.09005 * 109.46945 * 60.00388 * 1 2 3 29 29 H 1.09003 * 109.47059 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47671 * 240.00130 * 2 1 3 31 31 H 1.09000 * 109.47110 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47382 * 300.00107 * 3 2 1 33 33 H 1.09000 * 109.46823 * 59.99610 * 3 2 1 34 34 H 1.08999 * 109.47077 * 212.57163 * 5 4 2 35 35 H 1.08999 * 109.47434 * 332.57450 * 5 4 2 36 36 H 1.08999 * 109.47079 * 299.99841 * 6 5 4 37 37 H 1.08999 * 109.47413 * 59.99614 * 6 5 4 38 38 H 1.09001 * 109.46885 * 89.84555 * 8 7 6 39 39 H 1.08998 * 109.46707 * 209.83972 * 8 7 6 40 40 H 1.09000 * 109.46915 * 329.84341 * 8 7 6 41 41 H 0.96998 * 119.99389 * 179.97438 * 12 11 9 42 42 H 1.08003 * 125.58675 * 359.96217 * 20 19 17 43 43 H 1.09007 * 115.54839 * 154.30127 * 23 22 21 44 44 H 1.09001 * 117.50159 * 359.97438 * 24 23 22 45 45 H 1.09001 * 117.50335 * 145.02359 * 24 23 22 46 46 H 1.09001 * 117.49583 * 214.98036 * 25 23 22 47 47 H 1.08993 * 117.49785 * 359.97432 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6846 -0.1759 2.5266 6 6 0.4123 -0.8584 3.0330 7 7 0.0789 -0.3442 4.3637 8 6 -0.7893 0.8281 4.4996 9 6 0.5788 -0.9591 5.4804 10 1 0.5672 -2.0365 5.5546 11 6 1.1006 -0.1977 6.5172 12 7 1.3872 -0.7643 7.6702 13 14 1.3958 1.6310 6.2762 14 1 0.2290 2.3927 6.7896 15 1 2.6169 2.0372 7.0172 16 1 1.5763 1.9169 4.8303 17 6 2.7746 -1.7993 1.0726 18 8 3.1059 -2.1897 -0.0306 19 6 3.1996 -2.5382 2.2735 20 6 3.9903 -3.6339 2.2259 21 16 4.2535 -4.1940 3.8194 22 6 3.2939 -2.9335 4.4570 23 6 3.0164 -2.7236 5.9232 24 6 3.7970 -3.5827 6.9200 25 6 2.3107 -3.8523 6.6774 26 7 2.8452 -2.1849 3.5119 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6765 1.9563 0.8900 34 1 2.5058 -0.3831 3.2128 35 1 1.5215 0.9003 2.4695 36 1 -0.4088 -0.6512 2.3469 37 1 0.5753 -1.9346 3.0901 38 1 -1.8286 0.5052 4.5613 39 1 -0.5240 1.3736 5.4052 40 1 -0.6613 1.4773 3.6335 41 1 1.7522 -0.2323 8.3945 42 1 4.3901 -4.0819 1.3282 43 1 2.7827 -1.6998 6.2156 44 1 4.5110 -4.3000 6.5153 45 1 4.0771 -3.1242 7.8685 46 1 1.6128 -3.5712 7.4661 47 1 2.0467 -4.7465 6.1129 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677223376.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:00:33 Heat of formation + Delta-G solvation = 72.241250 kcal Electronic energy + Delta-G solvation = -29459.636910 eV Core-core repulsion = 25771.757184 eV Total energy + Delta-G solvation = -3687.879726 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.81877 -39.93731 -38.31694 -37.65510 -36.92649 -33.79693 -33.16087 -31.33294 -30.00502 -28.18065 -27.70068 -27.08480 -25.44425 -24.82623 -23.12751 -22.14564 -21.92249 -21.03203 -19.99269 -19.26592 -18.71576 -17.70737 -17.12604 -17.11991 -16.64623 -16.50213 -15.73533 -15.50910 -15.12725 -15.06194 -14.89632 -14.73162 -14.56169 -14.35219 -14.14337 -13.99751 -13.58966 -13.36123 -13.20387 -13.08959 -12.96824 -12.76704 -12.71594 -12.29510 -12.24117 -12.18713 -11.86308 -11.74695 -11.62999 -11.53032 -11.43835 -11.22292 -11.06785 -10.45044 -10.27584 -10.09472 -9.83468 -9.53177 -8.43778 -7.89054 -5.38151 -0.41777 0.36042 0.71036 0.99905 1.36993 1.50000 1.56209 2.00919 2.32308 2.57868 2.91563 3.29484 3.38628 3.51348 3.77498 3.94000 4.11498 4.14905 4.19655 4.23914 4.30177 4.32795 4.37099 4.58351 4.60626 4.64686 4.66952 4.70564 4.74415 4.80278 4.85202 4.90354 4.94698 4.96241 5.04648 5.16950 5.22267 5.24388 5.31654 5.51563 5.56091 5.71352 5.84551 6.22324 6.30221 6.53339 6.69803 7.10197 7.20482 7.82857 8.28984 9.23247 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.009052 B = 0.007484 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3092.593566 B = 3740.273951 C = 6158.548114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.123 3.877 3 C -0.153 4.153 4 N -0.584 5.584 5 C 0.095 3.905 6 C 0.162 3.838 7 N -0.623 5.623 8 C 0.114 3.886 9 C -0.210 4.210 10 H 0.061 0.939 11 C -0.001 4.001 12 N -0.927 5.927 13 Si 0.922 3.078 14 H -0.295 1.295 15 H -0.323 1.323 16 H -0.265 1.265 17 C 0.590 3.410 18 O -0.574 6.574 19 C -0.019 4.019 20 C -0.240 4.240 21 S 0.257 5.743 22 C 0.059 3.941 23 C -0.095 4.095 24 C -0.158 4.158 25 C -0.139 4.139 26 N -0.433 5.433 27 H 0.059 0.941 28 H 0.092 0.908 29 H 0.048 0.952 30 H 0.091 0.909 31 H 0.047 0.953 32 H 0.094 0.906 33 H 0.054 0.946 34 H 0.095 0.905 35 H 0.060 0.940 36 H 0.050 0.950 37 H 0.035 0.965 38 H 0.025 0.975 39 H 0.021 0.979 40 H 0.051 0.949 41 H 0.254 0.746 42 H 0.198 0.802 43 H 0.143 0.857 44 H 0.110 0.890 45 H 0.100 0.900 46 H 0.089 0.911 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.826 -3.212 -9.541 10.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.021 3.979 3 C -0.211 4.211 4 N -0.315 5.315 5 C -0.030 4.030 6 C 0.036 3.964 7 N -0.348 5.348 8 C -0.030 4.030 9 C -0.341 4.341 10 H 0.078 0.922 11 C -0.197 4.197 12 N -0.572 5.572 13 Si 0.756 3.244 14 H -0.223 1.223 15 H -0.253 1.253 16 H -0.189 1.189 17 C 0.377 3.623 18 O -0.455 6.455 19 C -0.154 4.154 20 C -0.383 4.383 21 S 0.516 5.484 22 C -0.219 4.219 23 C -0.117 4.117 24 C -0.196 4.196 25 C -0.178 4.178 26 N -0.147 5.147 27 H 0.078 0.922 28 H 0.111 0.889 29 H 0.067 0.933 30 H 0.109 0.891 31 H 0.066 0.934 32 H 0.113 0.887 33 H 0.073 0.927 34 H 0.113 0.887 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.053 0.947 38 H 0.043 0.957 39 H 0.039 0.961 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.215 0.785 43 H 0.160 0.840 44 H 0.128 0.872 45 H 0.118 0.882 46 H 0.108 0.892 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.232 -3.697 -9.443 10.989 hybrid contribution -0.248 1.789 -0.331 1.836 sum 3.985 -1.908 -9.774 10.726 Atomic orbital electron populations 1.22178 0.93460 1.02125 1.03399 1.21297 0.95367 0.93687 0.87545 1.22091 1.00909 0.94748 1.03362 1.48080 1.49230 1.25698 1.08459 1.22635 1.01723 0.97146 0.81477 1.21148 0.93420 0.96644 0.85203 1.44187 1.54556 1.33674 1.02369 1.21336 0.93778 0.89390 0.98520 1.18649 1.30893 0.91614 0.92908 0.92165 1.25776 0.98205 0.98886 0.96806 1.69799 1.48791 1.35708 1.02920 0.86210 0.74920 0.85536 0.77760 1.22319 1.25288 1.18945 1.17377 0.77927 0.80345 0.86692 1.90700 1.58663 1.69356 1.26821 1.20503 1.04051 0.98645 0.92231 1.26789 1.04685 1.01142 1.05643 1.82189 1.44443 1.28209 0.93527 1.26819 0.99570 0.95963 0.99578 1.20848 1.06149 1.01509 0.83155 1.23090 0.94424 1.01861 1.00239 1.22768 0.95279 0.97407 1.02353 1.67389 1.21698 1.27829 0.97822 0.92227 0.88950 0.93302 0.89056 0.93389 0.88746 0.92652 0.88730 0.92190 0.93176 0.94702 0.95684 0.96051 0.92984 0.93649 0.78518 0.84007 0.87194 0.88183 0.89206 0.88780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 8.24 71.98 0.59 -3.03 16 2 C 0.12 3.38 3.25 44.99 0.15 3.52 16 3 C -0.15 -3.58 9.16 71.98 0.66 -2.92 16 4 N -0.58 -19.84 2.39 -801.86 -1.92 -21.75 16 5 C 0.09 3.55 4.63 86.38 0.40 3.95 16 6 C 0.16 6.38 5.20 86.38 0.45 6.83 16 7 N -0.62 -27.58 2.42 -726.92 -1.76 -29.34 16 8 C 0.11 4.57 9.28 127.77 1.19 5.76 16 9 C -0.21 -10.49 8.47 84.04 0.71 -9.78 16 10 H 0.06 3.32 6.72 -2.91 -0.02 3.30 16 11 C 0.00 -0.05 4.10 84.86 0.35 0.29 16 12 N -0.93 -49.17 12.69 21.65 0.27 -48.90 16 13 Si 0.92 43.97 24.69 68.60 1.69 45.67 16 14 H -0.29 -13.99 6.87 99.48 0.68 -13.31 16 15 H -0.32 -16.10 7.11 99.48 0.71 -15.39 16 16 H -0.26 -12.17 6.89 99.48 0.69 -11.48 16 17 C 0.59 21.83 7.64 86.62 0.66 22.49 16 18 O -0.57 -22.49 16.05 -4.11 -0.07 -22.55 16 19 C -0.02 -0.68 6.39 40.56 0.26 -0.42 16 20 C -0.24 -7.09 10.62 67.12 0.71 -6.38 16 21 S 0.26 6.65 21.65 -56.49 -1.22 5.43 16 22 C 0.06 2.10 6.99 88.57 0.62 2.72 16 23 C -0.09 -3.63 4.63 -11.54 -0.05 -3.68 16 24 C -0.16 -4.81 10.01 30.59 0.31 -4.50 16 25 C -0.14 -4.87 9.82 30.59 0.30 -4.57 16 26 N -0.43 -16.80 5.18 -180.83 -0.94 -17.74 16 27 H 0.06 1.48 6.33 -2.39 -0.02 1.47 16 28 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 29 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.09 2.63 6.90 -2.39 -0.02 2.61 16 31 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.05 1.37 6.62 -2.39 -0.02 1.35 16 34 H 0.09 4.09 5.31 -2.39 -0.01 4.08 16 35 H 0.06 2.19 6.37 -2.39 -0.02 2.18 16 36 H 0.05 1.78 5.64 -2.39 -0.01 1.77 16 37 H 0.03 1.52 6.76 -2.39 -0.02 1.50 16 38 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.02 0.93 3.34 -2.39 -0.01 0.92 16 40 H 0.05 1.80 8.07 -2.39 -0.02 1.78 16 41 H 0.25 13.37 8.31 -92.71 -0.77 12.60 16 42 H 0.20 5.02 8.03 -2.91 -0.02 5.00 16 43 H 0.14 6.73 4.10 -2.38 -0.01 6.72 16 44 H 0.11 2.63 7.21 -2.39 -0.02 2.61 16 45 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 46 H 0.09 3.66 8.14 -2.39 -0.02 3.64 16 47 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 Total: -1.00 -59.34 369.22 4.32 -55.02 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: 0.95 Total: 23.89 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: 7.30 Total: 10.28 kcal Atomic # 7 Polarization: -113.39 SS G_CDS: -4.34 Total: -117.73 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.07 Total: -22.55 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.69 Total: 45.67 kcal Atomic # 16 Polarization: 6.65 SS G_CDS: -1.22 Total: 5.43 kcal Total: -59.34 4.32 -55.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677223376.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.262 kcal (2) G-P(sol) polarization free energy of solvation -59.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds