Wall clock time and date at job start Sat Apr 11 2020 05:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47386 * 2 1 4 4 H 1.09001 * 109.87308 * 55.82559 * 3 2 1 5 5 C 1.54327 * 109.88243 * 294.81429 * 3 2 1 6 6 H 1.08998 * 110.71961 * 336.75013 * 5 3 2 7 7 N 1.46501 * 110.87526 * 99.94901 * 5 3 2 8 8 C 1.34770 * 120.00257 * 200.06362 * 7 5 3 9 9 O 1.21279 * 119.99896 * 359.97438 * 8 7 5 10 10 C 1.50696 * 120.00210 * 180.02562 * 8 7 5 11 11 C 1.53001 * 109.47401 * 179.97438 * 10 8 7 12 12 C 1.50704 * 109.47097 * 179.97438 * 11 10 8 13 13 N 1.29022 * 124.91229 * 90.00031 * 12 11 10 14 14 C 1.31781 * 117.12487 * 179.97438 * 13 12 11 15 15 C 1.50696 * 122.75245 * 180.02562 * 14 13 12 16 16 C 1.33640 * 114.49911 * 0.02562 * 14 13 12 17 17 S 1.70970 * 124.91820 * 269.69700 * 12 11 10 18 18 C 1.55159 * 102.94215 * 218.38489 * 5 3 2 19 19 C 1.54911 * 101.61337 * 35.48239 * 18 5 3 20 20 N 1.47016 * 109.88657 * 177.00313 * 3 2 1 21 21 C 1.36945 * 125.64773 * 298.41700 * 20 3 2 22 22 H 1.07998 * 119.99643 * 345.38265 * 21 20 3 23 23 C 1.38804 * 120.00025 * 165.38893 * 21 20 3 24 24 N 1.31623 * 120.00123 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99937 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47185 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47144 * 120.00288 * 25 23 21 28 28 H 1.48503 * 109.47149 * 239.99609 * 25 23 21 29 29 H 1.09002 * 109.46966 * 305.55982 * 1 2 3 30 30 H 1.08996 * 109.47661 * 65.56109 * 1 2 3 31 31 H 1.08997 * 109.47084 * 185.56595 * 1 2 3 32 32 H 1.09004 * 109.47048 * 240.00330 * 2 1 3 33 33 H 1.08997 * 109.47627 * 120.00643 * 2 1 3 34 34 H 0.97004 * 119.99784 * 20.06634 * 7 5 3 35 35 H 1.09007 * 109.47030 * 299.99770 * 10 8 7 36 36 H 1.09004 * 109.47780 * 59.99392 * 10 8 7 37 37 H 1.08990 * 109.46957 * 299.99815 * 11 10 8 38 38 H 1.09000 * 109.46964 * 59.99793 * 11 10 8 39 39 H 1.09008 * 109.46926 * 90.00126 * 15 14 13 40 40 H 1.08999 * 109.47615 * 210.00060 * 15 14 13 41 41 H 1.08996 * 109.47275 * 330.00418 * 15 14 13 42 42 H 1.08005 * 126.04099 * 179.97438 * 16 14 13 43 43 H 1.08995 * 111.00486 * 153.57076 * 18 5 3 44 44 H 1.08994 * 111.00547 * 277.39150 * 18 5 3 45 45 H 1.08996 * 110.37135 * 81.85269 * 19 18 5 46 46 H 1.09006 * 110.36694 * 204.17213 * 19 18 5 47 47 H 0.97002 * 119.99782 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6207 1.9838 0.8481 5 6 1.6408 2.1404 -1.3173 6 1 1.4657 1.4071 -2.1045 7 7 0.4579 2.9828 -1.1240 8 6 -0.2881 3.3506 -2.1845 9 8 0.0201 2.9844 -3.2989 10 6 -1.5045 4.2177 -1.9858 11 6 -2.1655 4.4869 -3.3391 12 6 -3.3823 5.3535 -3.1402 13 7 -3.3817 6.6436 -3.1621 14 6 -4.5367 7.2483 -2.9701 15 6 -4.6817 8.7483 -2.9707 16 6 -5.5690 6.4223 -2.7750 17 16 -4.9646 4.7695 -2.8602 18 6 2.8855 3.0079 -1.6421 19 6 4.0372 2.0999 -1.1432 20 7 3.5084 1.4537 0.0723 21 6 4.2608 0.9474 1.0983 22 1 3.7948 0.7088 2.0430 23 6 5.6224 0.7410 0.9243 24 7 6.1903 1.0324 -0.2268 25 14 6.6489 0.0510 2.3242 26 1 5.7792 -0.1906 3.5033 27 1 7.2709 -1.2284 1.8980 28 1 7.7126 1.0228 2.6837 29 1 -0.3633 0.5977 0.8360 30 1 -0.3634 0.4251 -0.9355 31 1 -0.3633 -1.0228 0.0997 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 0.2117 3.2760 -0.2328 35 1 -2.2111 3.7077 -1.3309 36 1 -1.2067 5.1633 -1.5327 37 1 -1.4588 4.9970 -3.9935 38 1 -2.4634 3.5415 -3.7924 39 1 -4.8940 9.0924 -3.9830 40 1 -5.5004 9.0345 -2.3104 41 1 -3.7555 9.2029 -2.6192 42 1 -6.5936 6.7160 -2.6001 43 1 2.9669 3.1887 -2.7138 44 1 2.8617 3.9475 -1.0901 45 1 4.2821 1.3500 -1.8953 46 1 4.9159 2.6989 -0.9035 47 1 7.1418 0.8878 -0.3485 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692194935.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:00:52 Heat of formation + Delta-G solvation = -5.121288 kcal Electronic energy + Delta-G solvation = -26589.655384 eV Core-core repulsion = 22898.420967 eV Total energy + Delta-G solvation = -3691.234417 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.16491 -40.74437 -39.31180 -35.63777 -35.15722 -34.25499 -33.48317 -32.04173 -30.78886 -28.61170 -28.27647 -27.10563 -26.03269 -23.80198 -23.00890 -22.15395 -21.49810 -20.86986 -20.64594 -18.79128 -18.62404 -17.93431 -17.36872 -16.72056 -16.53530 -16.12812 -15.91767 -15.70721 -15.46172 -15.24188 -14.73976 -14.65076 -14.35844 -14.03339 -13.87109 -13.65439 -13.55250 -13.52433 -13.25131 -13.20114 -12.89680 -12.84635 -12.70957 -12.56093 -12.19740 -12.19030 -12.13352 -12.00664 -11.95632 -11.86491 -11.56911 -11.34030 -10.88692 -10.68099 -10.59250 -10.35295 -9.94848 -9.61064 -8.82529 -7.85325 -5.23333 -0.26119 0.43769 0.81894 1.46958 1.47788 1.57923 1.69372 1.78038 2.18284 2.51838 3.10569 3.34909 3.56887 3.74211 3.85970 3.93126 3.98504 4.11938 4.19942 4.23777 4.31439 4.39511 4.42784 4.43404 4.57376 4.64195 4.67874 4.77394 4.78523 4.80865 4.86133 4.91160 5.01738 5.04147 5.07564 5.19124 5.23003 5.34375 5.38654 5.48080 5.51697 5.58659 5.70126 5.72120 6.23903 6.62918 6.82096 7.09264 7.32041 7.77187 8.44392 9.26217 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.024610 B = 0.002085 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.469322 B =13426.363374 C =13814.572555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.127 4.127 3 C 0.158 3.842 4 H 0.054 0.946 5 C 0.158 3.842 6 H 0.076 0.924 7 N -0.703 5.703 8 C 0.517 3.483 9 O -0.581 6.581 10 C -0.121 4.121 11 C -0.025 4.025 12 C 0.040 3.960 13 N -0.500 5.500 14 C 0.043 3.957 15 C -0.078 4.078 16 C -0.262 4.262 17 S 0.151 5.849 18 C -0.142 4.142 19 C 0.182 3.818 20 N -0.614 5.614 21 C -0.229 4.229 22 H 0.083 0.917 23 C -0.066 4.066 24 N -0.950 5.950 25 Si 0.975 3.025 26 H -0.262 1.262 27 H -0.296 1.296 28 H -0.294 1.294 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.034 0.966 33 H 0.048 0.952 34 H 0.414 0.586 35 H 0.124 0.876 36 H 0.110 0.890 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.067 0.933 42 H 0.203 0.797 43 H 0.064 0.936 44 H 0.071 0.929 45 H -0.007 1.007 46 H 0.039 0.961 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.720 10.730 -2.228 29.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.167 4.167 3 C 0.051 3.949 4 H 0.071 0.929 5 C 0.052 3.948 6 H 0.094 0.906 7 N -0.354 5.354 8 C 0.304 3.696 9 O -0.461 6.461 10 C -0.162 4.162 11 C -0.066 4.066 12 C -0.237 4.237 13 N -0.216 5.216 14 C -0.089 4.089 15 C -0.137 4.137 16 C -0.401 4.401 17 S 0.406 5.594 18 C -0.182 4.182 19 C 0.056 3.944 20 N -0.339 5.339 21 C -0.358 4.358 22 H 0.101 0.899 23 C -0.259 4.259 24 N -0.599 5.599 25 Si 0.803 3.197 26 H -0.186 1.186 27 H -0.223 1.223 28 H -0.221 1.221 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.251 0.749 35 H 0.142 0.858 36 H 0.128 0.872 37 H 0.102 0.898 38 H 0.115 0.885 39 H 0.099 0.901 40 H 0.115 0.885 41 H 0.086 0.914 42 H 0.220 0.780 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.011 0.989 46 H 0.057 0.943 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -27.270 9.690 -2.960 29.092 hybrid contribution 1.306 0.444 0.647 1.524 sum -25.964 10.133 -2.313 27.967 Atomic orbital electron populations 1.21653 0.93555 1.01986 1.01947 1.21909 0.96734 0.97559 1.00465 1.21269 0.84293 0.94616 0.94679 0.92852 1.21593 0.84215 0.91893 0.97078 0.90576 1.45860 1.26952 1.51790 1.10832 1.20995 0.84551 0.80081 0.83925 1.90710 1.72643 1.57230 1.25529 1.21585 0.94745 1.01014 0.98848 1.19902 0.91176 0.97865 0.97693 1.27009 1.00257 0.93050 1.03423 1.66157 1.29474 1.08601 1.17406 1.20763 0.86756 0.99786 1.01579 1.20436 1.03673 0.85893 1.03695 1.27211 1.05718 0.94394 1.12778 1.83926 1.01903 1.08469 1.65106 1.23222 0.95906 0.98687 1.00352 1.21131 0.93856 0.92293 0.87119 1.44713 1.00687 1.68332 1.20128 1.19341 0.90317 1.34382 0.91745 0.89882 1.25734 0.98677 1.02164 0.99329 1.70157 1.10290 1.54570 1.24877 0.85061 0.78573 0.77103 0.78916 1.18629 1.22335 1.22099 0.91315 0.92957 0.92330 0.94757 0.93321 0.74864 0.85762 0.87174 0.89808 0.88461 0.90091 0.88541 0.91372 0.77993 0.91763 0.90997 0.98915 0.94266 0.94441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.40 9.58 71.98 0.69 -2.71 16 2 C -0.13 -4.51 5.41 30.59 0.17 -4.35 16 3 C 0.16 5.99 2.94 45.34 0.13 6.12 16 4 H 0.05 1.86 7.70 -2.39 -0.02 1.84 16 5 C 0.16 5.43 1.92 46.18 0.09 5.52 16 6 H 0.08 2.91 7.34 -2.39 -0.02 2.89 16 7 N -0.70 -17.48 4.95 -436.92 -2.16 -19.65 16 8 C 0.52 12.91 7.83 87.66 0.69 13.59 16 9 O -0.58 -19.65 15.71 -3.03 -0.05 -19.70 16 10 C -0.12 -2.01 5.68 29.85 0.17 -1.84 16 11 C -0.03 -0.47 5.09 29.85 0.15 -0.32 16 12 C 0.04 0.74 6.64 88.52 0.59 1.33 16 13 N -0.50 -10.72 10.53 -179.41 -1.89 -12.61 16 14 C 0.04 0.71 6.74 41.52 0.28 0.99 16 15 C -0.08 -0.87 10.31 71.23 0.73 -0.14 16 16 C -0.26 -3.34 11.13 66.78 0.74 -2.59 16 17 S 0.15 2.04 23.18 -56.49 -1.31 0.73 16 18 C -0.14 -5.58 6.76 31.99 0.22 -5.36 16 19 C 0.18 9.14 5.41 86.85 0.47 9.61 16 20 N -0.61 -30.51 3.13 -668.15 -2.09 -32.60 16 21 C -0.23 -12.40 9.75 84.03 0.82 -11.58 16 22 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 23 C -0.07 -3.71 5.47 84.86 0.46 -3.25 16 24 N -0.95 -57.41 10.57 21.65 0.23 -57.18 16 25 Si 0.97 45.40 29.55 68.60 2.03 47.42 16 26 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 27 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 28 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 29 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.05 1.31 7.40 -2.39 -0.02 1.29 16 31 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.03 1.36 8.07 -2.38 -0.02 1.34 16 33 H 0.05 1.87 7.90 -2.39 -0.02 1.85 16 34 H 0.41 7.81 8.32 -92.71 -0.77 7.03 16 35 H 0.12 1.37 8.14 -2.38 -0.02 1.35 16 36 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.08 1.92 8.10 -2.39 -0.02 1.90 16 38 H 0.10 1.76 8.10 -2.39 -0.02 1.74 16 39 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 40 H 0.10 0.61 8.12 -2.39 -0.02 0.59 16 41 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.20 1.28 8.06 -2.91 -0.02 1.26 16 43 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 44 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 45 H -0.01 -0.40 8.06 -2.39 -0.02 -0.42 16 46 H 0.04 2.21 6.93 -2.38 -0.02 2.19 16 47 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -72.72 394.98 1.35 -71.37 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.19 Total: 17.17 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: 6.40 Total: 5.03 kcal Atomic # 7 Polarization: -116.12 SS G_CDS: -5.91 Total: -122.03 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.05 Total: -19.70 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -1.31 Total: 0.73 kcal Total: -72.72 1.35 -71.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692194935.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.249 kcal (2) G-P(sol) polarization free energy of solvation -72.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds