Wall clock time and date at job start Sat Apr 11 2020 05:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47245 * 2 1 4 4 N 1.46496 * 109.46962 * 179.97438 * 3 2 1 5 5 C 1.34781 * 120.00475 * 270.00042 * 4 3 2 6 6 O 1.21281 * 120.00179 * 180.02562 * 5 4 3 7 7 C 1.50699 * 119.99461 * 0.02562 * 5 4 3 8 8 C 1.50701 * 109.46710 * 179.97438 * 7 5 4 9 9 C 1.33642 * 126.03438 * 90.00755 * 8 7 5 10 10 N 1.31788 * 114.49920 * 180.02562 * 9 8 7 11 11 C 1.29027 * 117.12219 * 359.97438 * 10 9 8 12 12 S 1.70972 * 110.16967 * 359.72852 * 11 10 9 13 13 C 1.46496 * 119.99914 * 90.00841 * 4 3 2 14 14 C 1.53358 * 109.41924 * 240.12445 * 13 4 3 15 15 C 1.53188 * 109.15126 * 178.67149 * 14 13 4 16 16 N 1.46927 * 108.89428 * 54.57704 * 15 14 13 17 17 C 1.36933 * 120.63022 * 126.33925 * 16 15 14 18 18 H 1.08000 * 120.00191 * 331.82823 * 17 16 15 19 19 C 1.38816 * 120.00216 * 151.82741 * 17 16 15 20 20 N 1.31624 * 119.99356 * 343.07025 * 19 17 16 21 21 Si 1.86793 * 120.00395 * 163.07047 * 19 17 16 22 22 H 1.48493 * 109.47484 * 90.00085 * 21 19 17 23 23 H 1.48503 * 109.47169 * 210.00310 * 21 19 17 24 24 H 1.48506 * 109.47138 * 329.99723 * 21 19 17 25 25 C 1.46927 * 118.73625 * 306.32307 * 16 15 14 26 26 C 1.53041 * 109.46693 * 119.99440 * 13 4 3 27 27 H 1.08998 * 109.46605 * 299.99870 * 1 2 3 28 28 H 1.08995 * 109.47018 * 59.99708 * 1 2 3 29 29 H 1.08997 * 109.46875 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46912 * 240.00551 * 2 1 3 31 31 H 1.09000 * 109.47286 * 120.00690 * 2 1 3 32 32 H 1.09000 * 109.46715 * 60.00431 * 3 2 1 33 33 H 1.08995 * 109.47351 * 300.00088 * 3 2 1 34 34 H 1.09000 * 109.47449 * 299.99459 * 7 5 4 35 35 H 1.09003 * 109.46929 * 60.00384 * 7 5 4 36 36 H 1.08002 * 122.75102 * 359.97438 * 9 8 7 37 37 H 1.07997 * 124.90902 * 180.02562 * 11 10 9 38 38 H 1.09005 * 109.46233 * 0.02562 * 13 4 3 39 39 H 1.08999 * 109.68305 * 58.70550 * 14 13 4 40 40 H 1.09002 * 109.46954 * 298.51328 * 14 13 4 41 41 H 1.08997 * 109.58674 * 294.71955 * 15 14 13 42 42 H 1.09000 * 109.58865 * 174.43595 * 15 14 13 43 43 H 0.96997 * 119.99488 * 180.02562 * 20 19 17 44 44 H 1.09002 * 109.58387 * 173.39335 * 25 16 15 45 45 H 1.09004 * 109.58558 * 293.67310 * 25 16 15 46 46 H 1.08998 * 109.49362 * 61.43206 * 26 13 4 47 47 H 1.08995 * 109.49667 * 301.34226 * 26 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1785 1.4426 1.1681 6 8 5.3913 1.4430 1.1685 7 6 3.4245 1.4422 2.4729 8 6 4.4034 1.4418 3.6187 9 6 4.9140 2.5223 4.2168 10 7 5.7531 2.2585 5.1981 11 6 5.9784 1.0156 5.4613 12 16 5.0708 0.0169 4.4115 13 6 4.2380 1.4424 -1.2678 14 6 5.1169 0.1882 -1.3488 15 6 5.8549 0.1776 -2.6911 16 7 6.5891 1.4415 -2.8404 17 6 7.9307 1.4409 -3.1144 18 1 8.5477 0.6159 -2.7901 19 6 8.4978 2.5005 -3.8090 20 7 7.7314 3.3275 -4.4881 21 14 10.3484 2.7528 -3.7800 22 1 10.9673 2.0080 -4.9057 23 1 10.6529 4.1998 -3.9169 24 1 10.8962 2.2514 -2.4940 25 6 5.8562 2.7061 -2.6905 26 6 5.1178 2.6921 -1.3485 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6768 1.9564 -0.8899 34 1 2.7975 2.3320 2.5305 35 1 2.7981 0.5520 2.5303 36 1 4.6604 3.5293 3.9198 37 1 6.6404 0.6579 6.2360 38 1 3.5299 1.4429 -2.0965 39 1 4.4937 -0.7025 -1.2692 40 1 5.8419 0.1995 -0.5349 41 1 5.1351 0.0751 -3.5031 42 1 6.5555 -0.6571 -2.7163 43 1 8.1277 4.0677 -4.9738 44 1 6.5579 3.5399 -2.7128 45 1 5.1382 2.8109 -3.5039 46 1 5.8427 2.6797 -0.5345 47 1 4.4939 3.5821 -1.2671 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713101127.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:01:00 Heat of formation + Delta-G solvation = 9.501204 kcal Electronic energy + Delta-G solvation = -27960.003758 eV Core-core repulsion = 24269.403420 eV Total energy + Delta-G solvation = -3690.600338 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.48053 -40.42926 -38.68782 -37.13378 -35.05575 -33.66894 -33.41793 -31.75001 -31.26483 -28.83295 -27.30927 -26.59719 -25.48802 -23.90132 -23.79569 -22.58816 -21.36380 -20.96721 -19.96839 -18.97242 -18.85717 -17.59101 -17.35499 -16.90125 -16.49176 -15.96546 -15.62534 -15.47068 -15.36780 -15.32060 -14.87580 -14.84164 -14.58494 -14.54367 -14.13445 -14.06848 -13.71601 -13.45222 -13.23094 -13.04012 -12.96994 -12.72461 -12.61437 -12.54378 -12.27522 -12.16347 -12.13979 -12.00412 -11.80173 -11.55590 -11.37033 -11.22539 -10.68640 -10.62854 -10.52314 -10.15190 -9.83856 -9.51565 -8.69310 -7.90620 -5.34318 -0.25074 0.45905 0.80239 1.41076 1.43596 1.53537 1.71207 1.81688 2.14173 2.48276 3.24655 3.43526 3.56757 3.67564 3.77379 4.02719 4.04634 4.07269 4.10469 4.27183 4.36193 4.37635 4.47241 4.51011 4.53458 4.64724 4.68011 4.73957 4.80954 4.82729 4.89041 4.96758 5.03560 5.08914 5.16256 5.18744 5.29223 5.33676 5.44175 5.49695 5.53679 5.61783 5.68100 5.81379 6.37165 6.56207 6.74957 7.12922 7.32235 7.84450 8.35091 9.15888 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.010110 B = 0.003821 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2768.871728 B = 7326.405382 C = 9288.902145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.140 4.140 3 C 0.100 3.900 4 N -0.605 5.605 5 C 0.505 3.495 6 O -0.565 6.565 7 C -0.055 4.055 8 C -0.206 4.206 9 C 0.023 3.977 10 N -0.505 5.505 11 C 0.010 3.990 12 S 0.150 5.850 13 C 0.171 3.829 14 C -0.129 4.129 15 C 0.147 3.853 16 N -0.609 5.609 17 C -0.264 4.264 18 H 0.057 0.943 19 C -0.047 4.047 20 N -0.931 5.931 21 Si 0.962 3.038 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.279 1.279 25 C 0.184 3.816 26 C -0.137 4.137 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.106 0.894 33 H 0.087 0.913 34 H 0.143 0.857 35 H 0.132 0.868 36 H 0.178 0.822 37 H 0.225 0.775 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.051 0.949 41 H 0.024 0.976 42 H 0.047 0.953 43 H 0.251 0.749 44 H 0.048 0.952 45 H 0.006 0.994 46 H 0.048 0.952 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.067 -7.039 17.474 26.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C -0.022 4.022 4 N -0.336 5.336 5 C 0.293 3.707 6 O -0.443 6.443 7 C -0.097 4.097 8 C -0.327 4.327 9 C -0.127 4.127 10 N -0.219 5.219 11 C -0.286 4.286 12 S 0.402 5.598 13 C 0.068 3.932 14 C -0.169 4.169 15 C 0.021 3.979 16 N -0.333 5.333 17 C -0.395 4.395 18 H 0.075 0.925 19 C -0.242 4.242 20 N -0.577 5.577 21 Si 0.790 3.210 22 H -0.205 1.205 23 H -0.215 1.215 24 H -0.204 1.204 25 C 0.058 3.942 26 C -0.177 4.177 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.125 0.875 33 H 0.106 0.894 34 H 0.161 0.839 35 H 0.150 0.850 36 H 0.195 0.805 37 H 0.242 0.758 38 H 0.110 0.890 39 H 0.093 0.907 40 H 0.070 0.930 41 H 0.042 0.958 42 H 0.066 0.934 43 H 0.060 0.940 44 H 0.066 0.934 45 H 0.024 0.976 46 H 0.066 0.934 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.194 -7.586 17.624 26.442 hybrid contribution 1.339 1.262 -0.724 1.978 sum -16.854 -6.324 16.900 24.691 Atomic orbital electron populations 1.21677 0.93551 1.02362 1.02760 1.21945 0.97268 0.96320 1.02325 1.22047 0.76966 0.98031 1.05157 1.48255 1.07800 1.72804 1.04788 1.21030 0.87803 0.75847 0.86050 1.90759 1.16065 1.49875 1.87604 1.20234 0.95547 1.08193 0.85705 1.25574 1.07178 0.95588 1.04403 1.21886 0.96011 1.00851 0.93985 1.66308 1.16893 1.20554 1.18114 1.28850 1.04344 0.90893 1.04563 1.83802 1.38169 1.10909 1.26890 1.20818 0.92891 0.94290 0.85188 1.22253 0.98874 0.97246 0.98533 1.20979 0.94164 0.88309 0.94488 1.44246 1.05590 1.01146 1.82287 1.19426 0.84901 1.06631 1.28497 0.92527 1.25710 1.01756 0.99802 0.96942 1.70158 1.35418 1.18622 1.33513 0.85360 0.80924 0.76839 0.77865 1.20471 1.21481 1.20446 1.20494 0.93108 0.88953 0.91642 1.22329 0.98812 0.97290 0.99278 0.91096 0.92385 0.92370 0.92833 0.91637 0.87548 0.89444 0.83899 0.85038 0.80508 0.75824 0.88999 0.90724 0.93021 0.95764 0.93423 0.94032 0.93398 0.97616 0.93351 0.92063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.91 71.98 0.71 -0.51 16 2 C -0.14 -1.72 6.26 30.60 0.19 -1.53 16 3 C 0.10 1.39 5.18 86.38 0.45 1.84 16 4 N -0.60 -14.63 2.42 -797.09 -1.93 -16.56 16 5 C 0.50 13.62 7.09 87.66 0.62 14.25 16 6 O -0.56 -21.88 12.28 -3.03 -0.04 -21.91 16 7 C -0.06 -0.93 4.79 29.10 0.14 -0.79 16 8 C -0.21 -4.51 5.09 24.64 0.13 -4.39 16 9 C 0.02 0.58 11.25 83.66 0.94 1.52 16 10 N -0.50 -13.39 10.54 -203.74 -2.15 -15.53 16 11 C 0.01 0.21 12.23 130.65 1.60 1.81 16 12 S 0.15 2.95 23.22 -56.49 -1.31 1.63 16 13 C 0.17 5.59 2.51 45.13 0.11 5.71 16 14 C -0.13 -4.74 5.30 30.78 0.16 -4.58 16 15 C 0.15 6.44 6.50 86.36 0.56 7.00 16 16 N -0.61 -32.69 2.99 -699.11 -2.09 -34.79 16 17 C -0.26 -15.64 9.58 84.04 0.81 -14.84 16 18 H 0.06 3.34 7.88 -2.91 -0.02 3.32 16 19 C -0.05 -2.75 4.92 84.86 0.42 -2.33 16 20 N -0.93 -56.93 11.20 21.65 0.24 -56.69 16 21 Si 0.96 47.56 29.59 68.60 2.03 49.59 16 22 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 23 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 24 H -0.28 -13.64 7.11 99.48 0.71 -12.94 16 25 C 0.18 9.38 5.30 86.36 0.46 9.84 16 26 C -0.14 -5.64 5.27 30.67 0.16 -5.48 16 27 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 0.77 7.22 -2.39 -0.02 0.76 16 32 H 0.11 0.86 6.44 -2.39 -0.02 0.85 16 33 H 0.09 1.17 7.92 -2.39 -0.02 1.15 16 34 H 0.14 1.51 7.40 -2.39 -0.02 1.49 16 35 H 0.13 1.47 7.19 -2.39 -0.02 1.45 16 36 H 0.18 3.90 8.06 -2.91 -0.02 3.88 16 37 H 0.23 2.97 8.06 -2.91 -0.02 2.94 16 38 H 0.09 2.75 7.79 -2.38 -0.02 2.73 16 39 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.05 2.25 6.22 -2.39 -0.01 2.23 16 41 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.05 2.10 7.93 -2.39 -0.02 2.08 16 43 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 44 H 0.05 2.80 6.06 -2.39 -0.01 2.78 16 45 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 46 H 0.05 2.31 6.21 -2.39 -0.01 2.30 16 47 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -78.92 382.57 3.16 -75.76 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 0.96 Total: 10.99 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: 7.46 Total: 7.50 kcal Atomic # 7 Polarization: -117.64 SS G_CDS: -5.93 Total: -123.57 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.04 Total: -21.91 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.59 kcal Atomic # 16 Polarization: 2.95 SS G_CDS: -1.31 Total: 1.63 kcal Total: -78.92 3.16 -75.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713101127.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.257 kcal (2) G-P(sol) polarization free energy of solvation -78.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds