Wall clock time and date at job start Sat Apr 11 2020 05:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09003 * 109.47666 * 2 1 4 4 C 1.53006 * 109.47007 * 240.00001 * 2 1 3 5 5 C 1.52993 * 109.47073 * 299.99964 * 4 2 1 6 6 C 1.52999 * 109.47571 * 300.00205 * 5 4 2 7 7 C 1.53001 * 109.47146 * 59.99463 * 6 5 4 8 8 C 1.52993 * 109.47324 * 300.00688 * 7 6 5 9 9 C 1.53006 * 109.47073 * 179.97438 * 8 7 6 10 10 N 1.46495 * 109.47053 * 175.02590 * 9 8 7 11 11 C 1.36933 * 120.00089 * 184.97765 * 10 9 8 12 12 H 1.08007 * 119.99803 * 0.02562 * 11 10 9 13 13 C 1.38813 * 120.00328 * 180.02562 * 11 10 9 14 14 N 1.31621 * 119.99823 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00172 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47180 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47434 * 119.99939 * 15 13 11 18 18 H 1.48502 * 109.47112 * 239.99740 * 15 13 11 19 19 N 1.46497 * 109.47015 * 299.99553 * 8 7 6 20 20 C 1.34779 * 120.00160 * 304.36601 * 19 8 7 21 21 O 1.21282 * 119.99798 * 354.61779 * 20 19 8 22 22 C 1.50703 * 119.99812 * 174.61139 * 20 19 8 23 23 C 1.50708 * 109.46856 * 180.02562 * 22 20 19 24 24 C 1.33632 * 126.03766 * 89.71605 * 23 22 20 25 25 N 1.31783 * 114.49842 * 179.78825 * 24 23 22 26 26 C 1.29033 * 117.12622 * 0.52299 * 25 24 23 27 27 S 1.70976 * 110.16167 * 359.71390 * 26 25 24 28 28 H 1.09005 * 109.47315 * 300.00312 * 1 2 3 29 29 H 1.09001 * 109.47350 * 59.99596 * 1 2 3 30 30 H 1.09003 * 109.47666 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47005 * 60.00507 * 4 2 1 32 32 H 1.09002 * 109.46883 * 180.02562 * 4 2 1 33 33 H 1.08998 * 109.47043 * 60.00069 * 5 4 2 34 34 H 1.09003 * 109.47286 * 179.97438 * 5 4 2 35 35 H 1.08998 * 109.46826 * 299.99997 * 6 5 4 36 36 H 1.08999 * 109.47323 * 180.02562 * 6 5 4 37 37 H 1.09001 * 109.47062 * 179.97438 * 7 6 5 38 38 H 1.09007 * 109.46920 * 60.00698 * 7 6 5 39 39 H 1.08998 * 109.46809 * 295.02724 * 9 8 7 40 40 H 1.09001 * 109.46745 * 55.02702 * 9 8 7 41 41 H 0.97003 * 120.00251 * 4.98379 * 10 9 8 42 42 H 0.97000 * 119.99674 * 179.97438 * 14 13 11 43 43 H 0.97002 * 119.99878 * 124.37005 * 19 8 7 44 44 H 1.08999 * 109.47314 * 299.99629 * 22 20 19 45 45 H 1.08998 * 109.47276 * 60.00637 * 22 20 19 46 46 H 1.07999 * 122.75280 * 359.97438 * 24 23 22 47 47 H 1.07996 * 124.91652 * 179.68083 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5299 -2.1637 -1.2493 6 6 2.0398 -2.8850 -0.0001 7 6 1.5299 -2.1637 1.2492 8 6 2.0399 -0.7213 1.2492 9 6 1.5294 0.0001 2.4982 10 7 2.1131 1.3424 2.5596 11 6 1.8809 2.1409 3.6475 12 1 1.2678 1.7809 4.4606 13 6 2.4335 3.4130 3.7055 14 7 3.1810 3.8515 2.7149 15 14 2.1172 4.5019 5.1900 16 1 1.2526 3.7804 6.1579 17 1 3.4091 4.8428 5.8380 18 1 1.4382 5.7485 4.7538 19 7 3.5049 -0.7213 1.2492 20 6 4.1788 -1.3802 2.2127 21 8 3.5763 -1.8904 3.1334 22 6 5.6808 -1.4830 2.1458 23 6 6.1842 -2.2639 3.3325 24 6 6.3538 -3.5883 3.3875 25 7 6.8119 -4.0331 4.5403 26 6 7.0282 -3.1588 5.4643 27 16 6.6456 -1.5927 4.8949 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6766 -0.2074 -2.1393 32 1 3.1299 -0.7217 -1.2490 33 1 0.4399 -2.1637 -1.2493 34 1 1.8928 -2.6775 -2.1395 35 1 3.1298 -2.8851 -0.0001 36 1 1.6768 -3.9128 -0.0003 37 1 1.8928 -2.6779 2.1392 38 1 0.4399 -2.1637 1.2493 39 1 0.4431 0.0779 2.4543 40 1 1.8179 -0.5625 3.3861 41 1 2.6640 1.6656 1.8295 42 1 3.5668 4.7405 2.7553 43 1 3.9899 -0.2471 0.5558 44 1 5.9696 -1.9930 1.2268 45 1 6.1144 -0.4830 2.1582 46 1 6.1363 -4.2403 2.5544 47 1 7.3970 -3.3838 6.4540 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714186124.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:01:14 Heat of formation + Delta-G solvation = -9.071365 kcal Electronic energy + Delta-G solvation = -28618.603245 eV Core-core repulsion = 24927.197539 eV Total energy + Delta-G solvation = -3691.405705 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.84922 -40.54950 -39.18345 -36.42329 -34.69044 -33.89355 -33.22873 -32.44729 -31.09290 -28.83587 -27.66802 -26.58148 -25.44694 -24.60178 -23.44173 -22.07158 -21.33795 -20.78731 -19.57988 -19.24604 -18.89064 -18.11771 -17.07182 -16.74278 -16.53409 -16.21691 -16.02727 -15.56265 -15.23570 -15.04094 -14.91694 -14.80640 -14.67526 -14.29632 -14.13200 -13.91947 -13.52701 -13.50170 -13.18299 -13.08852 -12.91994 -12.79779 -12.76179 -12.41841 -12.29507 -12.09802 -12.05667 -11.90526 -11.77749 -11.29123 -11.12476 -10.92882 -10.83972 -10.63012 -10.46852 -10.14985 -9.84554 -9.76847 -8.90594 -7.94416 -5.18868 -0.23281 0.46669 0.85917 1.43400 1.44413 1.53741 1.80983 1.87428 2.41698 2.55824 3.38849 3.44741 3.64777 3.75531 3.85939 3.87271 4.08334 4.10422 4.16483 4.26175 4.39036 4.43750 4.50511 4.53432 4.57958 4.61340 4.75671 4.80063 4.83448 4.89240 4.92316 4.99689 5.17271 5.18335 5.21029 5.22672 5.26325 5.32670 5.46290 5.47973 5.48032 5.56955 5.64690 5.83171 6.29080 6.72645 6.76070 7.36725 7.46248 8.12044 8.41157 9.28588 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.007479 B = 0.005607 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3743.136213 B = 4992.542336 C = 8048.102962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 H 0.056 0.944 4 C -0.108 4.108 5 C -0.114 4.114 6 C -0.105 4.105 7 C -0.124 4.124 8 C 0.193 3.807 9 C 0.143 3.857 10 N -0.724 5.724 11 C -0.238 4.238 12 H 0.057 0.943 13 C -0.065 4.065 14 N -0.961 5.961 15 Si 0.961 3.039 16 H -0.277 1.277 17 H -0.292 1.292 18 H -0.290 1.290 19 N -0.701 5.701 20 C 0.516 3.484 21 O -0.565 6.565 22 C -0.062 4.062 23 C -0.201 4.201 24 C 0.032 3.968 25 N -0.497 5.497 26 C 0.016 3.984 27 S 0.118 5.882 28 H 0.036 0.964 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.017 0.983 40 H 0.011 0.989 41 H 0.378 0.622 42 H 0.251 0.749 43 H 0.407 0.593 44 H 0.151 0.849 45 H 0.111 0.889 46 H 0.189 0.811 47 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.018 -14.469 -9.004 17.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.104 4.104 3 H 0.074 0.926 4 C -0.145 4.145 5 C -0.151 4.151 6 C -0.142 4.142 7 C -0.163 4.163 8 C 0.107 3.893 9 C 0.015 3.985 10 N -0.367 5.367 11 C -0.370 4.370 12 H 0.075 0.925 13 C -0.258 4.258 14 N -0.612 5.612 15 Si 0.791 3.209 16 H -0.202 1.202 17 H -0.219 1.219 18 H -0.217 1.217 19 N -0.352 5.352 20 C 0.303 3.697 21 O -0.444 6.444 22 C -0.103 4.103 23 C -0.323 4.323 24 C -0.119 4.119 25 N -0.211 5.211 26 C -0.281 4.281 27 S 0.370 5.630 28 H 0.055 0.945 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.035 0.965 40 H 0.029 0.971 41 H 0.211 0.789 42 H 0.060 0.940 43 H 0.243 0.757 44 H 0.169 0.831 45 H 0.129 0.871 46 H 0.206 0.794 47 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 4.669 -14.409 -7.589 16.941 hybrid contribution -0.066 0.904 0.249 0.940 sum 4.603 -13.504 -7.340 16.045 Atomic orbital electron populations 1.21893 0.94168 1.02418 1.01540 1.21185 0.97005 0.98549 0.93658 0.92591 1.21563 1.00925 0.95889 0.96137 1.21550 1.01178 0.94854 0.97517 1.21399 1.00725 0.98604 0.93504 1.21838 1.00796 0.94029 0.99634 1.20328 0.79494 0.95282 0.94237 1.21185 0.95107 0.85636 0.96569 1.42216 1.60500 1.12417 1.21557 1.19499 1.24252 0.95606 0.97638 0.92467 1.25301 1.01049 0.98795 1.00606 1.69763 1.39351 1.18719 1.33334 0.85256 0.77038 0.78940 0.79668 1.20177 1.21916 1.21693 1.45803 1.06562 1.53162 1.29705 1.20697 0.90066 0.77692 0.81275 1.90651 1.70723 1.48879 1.34130 1.20140 0.91107 1.02307 0.96789 1.25461 1.09743 0.97700 0.99359 1.21919 1.00994 0.92486 0.96510 1.66345 1.15772 1.37539 1.01430 1.28834 1.03675 0.91331 1.04262 1.84446 1.58186 1.13132 1.07192 0.94509 0.91432 0.90817 0.90669 0.91238 0.91448 0.90367 0.92141 0.91512 0.92454 0.91077 0.96510 0.97102 0.78909 0.94041 0.75715 0.83112 0.87131 0.79399 0.75667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.77 8.15 71.98 0.59 -3.18 16 2 C -0.08 -2.31 2.15 -10.80 -0.02 -2.33 16 3 H 0.06 1.86 7.08 -2.39 -0.02 1.85 16 4 C -0.11 -2.06 5.28 30.59 0.16 -1.90 16 5 C -0.11 -1.92 5.65 30.59 0.17 -1.75 16 6 C -0.10 -2.13 5.77 30.59 0.18 -1.96 16 7 C -0.12 -3.46 4.18 30.59 0.13 -3.33 16 8 C 0.19 6.01 0.09 3.60 0.00 6.01 16 9 C 0.14 6.14 4.72 86.38 0.41 6.55 16 10 N -0.72 -36.65 5.19 -343.45 -1.78 -38.43 16 11 C -0.24 -13.69 9.99 84.03 0.84 -12.85 16 12 H 0.06 3.34 7.83 -2.91 -0.02 3.32 16 13 C -0.06 -3.74 5.50 84.86 0.47 -3.27 16 14 N -0.96 -57.26 13.06 21.65 0.28 -56.98 16 15 Si 0.96 47.12 29.55 68.60 2.03 49.15 16 16 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 17 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 18 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 19 N -0.70 -20.10 3.49 -422.92 -1.48 -21.58 16 20 C 0.52 16.14 7.15 87.66 0.63 16.77 16 21 O -0.57 -22.51 12.33 -3.04 -0.04 -22.55 16 22 C -0.06 -1.43 6.24 29.11 0.18 -1.25 16 23 C -0.20 -5.35 5.09 24.64 0.13 -5.23 16 24 C 0.03 0.82 11.25 83.65 0.94 1.76 16 25 N -0.50 -13.68 10.54 -203.75 -2.15 -15.82 16 26 C 0.02 0.38 12.23 130.65 1.60 1.97 16 27 S 0.12 3.19 23.22 -56.49 -1.31 1.88 16 28 H 0.04 1.19 6.32 -2.38 -0.02 1.17 16 29 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.07 1.67 4.81 -2.39 -0.01 1.66 16 31 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 1.20 6.95 -2.39 -0.02 1.19 16 33 H 0.07 1.13 6.43 -2.39 -0.02 1.11 16 34 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.06 1.22 7.53 -2.39 -0.02 1.20 16 36 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.06 1.94 6.05 -2.39 -0.01 1.93 16 38 H 0.07 1.91 6.43 -2.38 -0.02 1.90 16 39 H 0.02 0.75 6.17 -2.39 -0.01 0.74 16 40 H 0.01 0.55 6.45 -2.39 -0.02 0.53 16 41 H 0.38 19.41 6.45 -92.71 -0.60 18.81 16 42 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 43 H 0.41 9.78 7.48 -92.71 -0.69 9.09 16 44 H 0.15 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 46 H 0.19 3.93 8.06 -2.91 -0.02 3.90 16 47 H 0.23 3.62 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -73.87 371.41 1.66 -72.21 By element: Atomic # 1 Polarization: 36.40 SS G_CDS: -0.28 Total: 36.12 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: 6.39 Total: -3.99 kcal Atomic # 7 Polarization: -127.69 SS G_CDS: -5.12 Total: -132.82 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.04 Total: -22.55 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Atomic # 16 Polarization: 3.19 SS G_CDS: -1.31 Total: 1.88 kcal Total: -73.87 1.66 -72.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714186124.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.136 kcal (2) G-P(sol) polarization free energy of solvation -73.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds