Wall clock time and date at job start Sat Apr 11 2020 05:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46913 * 2 1 4 4 N 1.46497 * 109.47067 * 180.02562 * 3 2 1 5 5 C 1.36941 * 119.99906 * 264.11736 * 4 3 2 6 6 H 1.07995 * 120.00047 * 188.01080 * 5 4 3 7 7 C 1.38819 * 119.99747 * 8.01653 * 5 4 3 8 8 N 1.31620 * 120.00291 * 25.64817 * 7 5 4 9 9 Si 1.86802 * 119.99560 * 205.64722 * 7 5 4 10 10 H 1.48497 * 109.47261 * 84.98800 * 9 7 5 11 11 H 1.48506 * 109.46720 * 204.98997 * 9 7 5 12 12 H 1.48498 * 109.47027 * 324.98523 * 9 7 5 13 13 C 1.46497 * 120.00186 * 84.11846 * 4 3 2 14 14 C 1.53001 * 109.46943 * 270.00045 * 13 4 3 15 15 N 1.46497 * 109.46943 * 179.97438 * 14 13 4 16 16 C 1.34784 * 120.00055 * 180.02562 * 15 14 13 17 17 O 1.21684 * 119.99715 * 359.97438 * 16 15 14 18 18 C 1.46683 * 120.00039 * 180.02562 * 16 15 14 19 19 S 1.76213 * 126.13045 * 359.96889 * 18 16 15 20 20 C 1.70950 * 90.31374 * 180.02562 * 19 18 16 21 21 C 1.50701 * 124.80202 * 179.97438 * 20 19 18 22 22 C 1.53000 * 117.49672 * 239.99818 * 21 20 19 23 23 C 1.52994 * 60.03552 * 252.50377 * 22 21 20 24 24 N 1.29435 * 110.39095 * 0.26891 * 20 19 18 25 25 C 1.30936 * 117.36076 * 359.49949 * 24 20 19 26 26 C 1.50701 * 122.90328 * 180.24942 * 25 24 20 27 27 H 1.09005 * 109.46839 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47209 * 299.99296 * 1 2 3 29 29 H 1.09000 * 109.47252 * 59.99786 * 1 2 3 30 30 H 1.09002 * 109.46747 * 240.00465 * 2 1 3 31 31 H 1.08998 * 109.47594 * 120.00629 * 2 1 3 32 32 H 1.09000 * 109.46609 * 60.00336 * 3 2 1 33 33 H 1.08998 * 109.47504 * 300.00684 * 3 2 1 34 34 H 0.96994 * 119.99772 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.47048 * 149.99735 * 13 4 3 36 36 H 1.08994 * 109.46937 * 29.99941 * 13 4 3 37 37 H 1.08998 * 109.47501 * 59.99968 * 14 13 4 38 38 H 1.09003 * 109.47342 * 299.99846 * 14 13 4 39 39 H 0.97001 * 120.00625 * 359.97438 * 15 14 13 40 40 H 1.08992 * 115.55595 * 25.67444 * 21 20 19 41 41 H 1.09001 * 117.50416 * 0.02562 * 22 21 20 42 42 H 1.09006 * 117.49401 * 145.00079 * 22 21 20 43 43 H 1.09002 * 117.50237 * 107.50363 * 23 22 21 44 44 H 1.09000 * 117.50302 * 252.52784 * 23 22 21 45 45 H 1.09000 * 109.47587 * 270.29324 * 26 25 24 46 46 H 1.09000 * 109.46952 * 30.29205 * 26 25 24 47 47 H 1.09005 * 109.47145 * 150.29111 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1901 1.5640 1.1788 6 1 5.2622 1.6941 1.1696 7 6 3.5067 1.5196 2.3863 8 7 2.3565 0.8849 2.4686 9 14 4.2194 2.3607 3.8943 10 1 3.8325 3.7944 3.8907 11 1 3.6923 1.7087 5.1201 12 1 5.6998 2.2474 3.8709 13 6 4.2370 1.3128 -1.2629 14 6 4.4919 -0.1673 -1.5548 15 7 5.2233 -0.2972 -2.8174 16 6 5.5596 -1.5180 -3.2790 17 8 5.2560 -2.5124 -2.6467 18 6 6.2925 -1.6480 -4.5429 19 16 6.8115 -0.3243 -5.5839 20 6 7.5035 -1.4423 -6.6764 21 6 8.2129 -1.0708 -7.9530 22 6 7.6395 -1.6137 -9.2635 23 6 8.9444 -2.1853 -8.7055 24 7 7.3265 -2.6532 -6.2550 25 6 6.6917 -2.8088 -5.1204 26 6 6.4221 -4.1609 -4.5119 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9565 -0.8899 34 1 1.8789 0.8543 3.3122 35 1 5.1893 1.8373 -1.1862 36 1 3.6476 1.7462 -2.0709 37 1 3.5395 -0.6919 -1.6315 38 1 5.0813 -0.6008 -0.7468 39 1 5.4650 0.4954 -3.3217 40 1 8.6565 -0.0754 -7.9719 41 1 6.7489 -2.2391 -9.2024 42 1 7.7059 -0.9752 -10.1445 43 1 8.9125 -3.1871 -8.2772 44 1 9.8692 -1.9227 -9.2191 45 1 5.4668 -4.5392 -4.8756 46 1 7.2173 -4.8512 -4.7937 47 1 6.3875 -4.0703 -3.4262 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714654707.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:01:24 Heat of formation + Delta-G solvation = 36.386811 kcal Electronic energy + Delta-G solvation = -26415.593813 eV Core-core repulsion = 22726.159322 eV Total energy + Delta-G solvation = -3689.434491 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.55873 -40.38303 -38.38501 -37.86772 -36.00367 -33.74914 -33.30042 -32.68072 -30.44653 -28.63981 -27.36857 -27.07913 -25.28064 -23.33598 -23.04559 -22.45896 -22.28855 -21.75079 -20.40028 -19.03589 -18.75349 -17.88027 -17.24632 -16.89961 -16.84116 -16.39077 -16.04197 -15.66692 -15.37075 -15.30185 -14.99508 -14.76929 -14.66350 -14.32438 -14.10781 -13.72570 -13.67190 -13.42425 -13.07291 -13.06029 -12.81979 -12.65337 -12.45204 -12.40760 -12.36295 -12.19009 -11.82222 -11.78290 -11.70908 -11.62868 -11.57012 -11.18083 -11.08365 -10.77623 -10.59539 -10.33483 -10.16326 -9.68985 -8.87063 -7.79933 -5.12551 -0.89276 0.04962 0.45851 1.25923 1.49456 1.52385 1.58416 1.97806 2.00908 2.56522 2.76652 2.98627 3.28145 3.62544 3.65250 3.79243 3.86931 3.99578 4.03940 4.18762 4.22740 4.29346 4.51473 4.61653 4.62287 4.65446 4.68188 4.79484 4.80935 4.84744 4.95518 4.95630 5.02849 5.05019 5.11745 5.21436 5.28470 5.30309 5.38074 5.44771 5.52063 5.65104 5.87390 6.19268 6.32840 6.36847 6.53176 7.03129 7.21879 7.91286 8.30642 9.20932 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.018724 B = 0.002334 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.049074 B =11993.292852 C =12334.673801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.121 4.121 3 C 0.174 3.826 4 N -0.606 5.606 5 C -0.265 4.265 6 H 0.073 0.927 7 C -0.046 4.046 8 N -0.908 5.908 9 Si 0.954 3.046 10 H -0.287 1.287 11 H -0.301 1.301 12 H -0.278 1.278 13 C 0.145 3.855 14 C 0.112 3.888 15 N -0.707 5.707 16 C 0.589 3.411 17 O -0.563 6.563 18 C -0.333 4.333 19 S 0.224 5.776 20 C 0.094 3.906 21 C -0.117 4.117 22 C -0.143 4.143 23 C -0.146 4.146 24 N -0.498 5.498 25 C 0.145 3.855 26 C -0.087 4.087 27 H 0.044 0.956 28 H 0.041 0.959 29 H 0.054 0.946 30 H 0.022 0.978 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.026 0.974 34 H 0.246 0.754 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.049 0.951 38 H 0.035 0.965 39 H 0.408 0.592 40 H 0.158 0.842 41 H 0.085 0.915 42 H 0.133 0.867 43 H 0.090 0.910 44 H 0.127 0.873 45 H 0.083 0.917 46 H 0.087 0.913 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.163 -1.007 -24.986 26.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.161 4.161 3 C 0.049 3.951 4 N -0.326 5.326 5 C -0.394 4.394 6 H 0.091 0.909 7 C -0.242 4.242 8 N -0.554 5.554 9 Si 0.784 3.216 10 H -0.214 1.214 11 H -0.228 1.228 12 H -0.203 1.203 13 C 0.017 3.983 14 C -0.014 4.014 15 N -0.359 5.359 16 C 0.375 3.625 17 O -0.445 6.445 18 C -0.457 4.457 19 S 0.485 5.515 20 C -0.180 4.180 21 C -0.139 4.139 22 C -0.182 4.182 23 C -0.185 4.185 24 N -0.213 5.213 25 C 0.006 3.994 26 C -0.145 4.145 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.040 0.960 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.044 0.956 34 H 0.056 0.944 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.067 0.933 38 H 0.054 0.946 39 H 0.244 0.756 40 H 0.175 0.825 41 H 0.103 0.897 42 H 0.151 0.849 43 H 0.108 0.892 44 H 0.145 0.855 45 H 0.102 0.898 46 H 0.106 0.894 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 9.945 -0.915 -24.615 26.564 hybrid contribution 0.021 -0.602 1.683 1.788 sum 9.966 -1.518 -22.932 25.050 Atomic orbital electron populations 1.21529 0.96120 1.00353 1.00654 1.22027 0.95085 0.99609 0.99368 1.20832 0.81526 0.94705 0.98012 1.44416 1.02348 1.83805 1.02081 1.19478 0.92365 1.42964 0.84599 0.90939 1.25358 0.98383 1.00908 0.99554 1.70330 1.18143 1.41940 1.24940 0.85477 0.77839 0.78690 0.79580 1.21406 1.22827 1.20325 1.21076 0.97118 0.91452 0.88604 1.22279 0.94613 1.01357 0.83161 1.45843 1.57809 1.07458 1.24752 1.17050 0.78417 0.83712 0.83287 1.90773 1.56179 1.37970 1.59529 1.25375 1.17397 0.98617 1.04308 1.83464 1.47739 1.08202 1.12118 1.27020 0.99105 0.90993 1.00883 1.20946 1.05256 1.01778 0.85895 1.23154 0.97736 1.02849 0.94454 1.23104 0.97216 0.97073 1.01084 1.66045 1.18663 1.23051 1.13530 1.20794 0.92386 0.96917 0.89268 1.20600 1.02907 0.89766 1.01271 0.93642 0.93934 0.92711 0.95951 0.92341 0.92001 0.95565 0.94425 0.91909 0.91081 0.93259 0.94621 0.75557 0.82493 0.89655 0.84937 0.89188 0.85465 0.89824 0.89399 0.90116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.88 9.91 71.98 0.71 -4.16 16 2 C -0.12 -5.50 5.61 30.60 0.17 -5.33 16 3 C 0.17 8.08 4.92 86.38 0.42 8.51 16 4 N -0.61 -28.66 2.54 -702.02 -1.78 -30.44 16 5 C -0.26 -13.95 9.70 84.03 0.81 -13.13 16 6 H 0.07 3.77 7.94 -2.91 -0.02 3.74 16 7 C -0.05 -2.49 4.89 84.86 0.41 -2.08 16 8 N -0.91 -50.58 8.62 21.65 0.19 -50.39 16 9 Si 0.95 44.29 29.62 68.60 2.03 46.32 16 10 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 11 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 12 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 13 C 0.15 5.41 5.82 86.38 0.50 5.91 16 14 C 0.11 4.32 5.88 86.38 0.51 4.82 16 15 N -0.71 -21.89 5.55 -467.08 -2.59 -24.48 16 16 C 0.59 19.92 7.78 86.45 0.67 20.59 16 17 O -0.56 -23.32 14.27 -4.30 -0.06 -23.38 16 18 C -0.33 -9.17 6.48 23.88 0.15 -9.01 16 19 S 0.22 4.12 22.31 -56.49 -1.26 2.86 16 20 C 0.09 1.77 6.96 88.46 0.62 2.38 16 21 C -0.12 -1.33 6.29 -11.51 -0.07 -1.41 16 22 C -0.14 -1.30 10.23 30.59 0.31 -0.99 16 23 C -0.15 -1.48 10.12 30.62 0.31 -1.17 16 24 N -0.50 -11.94 9.97 -178.29 -1.78 -13.72 16 25 C 0.15 3.96 6.79 42.10 0.29 4.25 16 26 C -0.09 -2.26 9.70 71.24 0.69 -1.57 16 27 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 28 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.02 0.98 5.97 -2.39 -0.01 0.97 16 31 H 0.06 3.15 6.33 -2.39 -0.02 3.13 16 32 H 0.06 3.24 5.85 -2.39 -0.01 3.23 16 33 H 0.03 1.08 7.98 -2.39 -0.02 1.06 16 34 H 0.25 13.55 8.31 -92.71 -0.77 12.77 16 35 H 0.06 2.19 8.03 -2.39 -0.02 2.18 16 36 H 0.07 2.28 7.95 -2.39 -0.02 2.26 16 37 H 0.05 2.11 5.92 -2.39 -0.01 2.09 16 38 H 0.04 1.61 8.14 -2.39 -0.02 1.60 16 39 H 0.41 9.77 7.66 -92.71 -0.71 9.06 16 40 H 0.16 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.08 1.06 8.14 -2.39 -0.02 1.05 16 42 H 0.13 0.52 8.14 -2.38 -0.02 0.50 16 43 H 0.09 1.30 7.84 -2.39 -0.02 1.29 16 44 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.08 2.07 8.14 -2.39 -0.02 2.06 16 46 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 47 H 0.08 2.48 6.01 -2.38 -0.01 2.47 16 Total: -1.00 -67.05 392.48 1.54 -65.51 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 0.28 Total: 20.10 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: 6.52 Total: 7.62 kcal Atomic # 7 Polarization: -113.07 SS G_CDS: -5.97 Total: -119.03 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.06 Total: -23.38 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: 4.12 SS G_CDS: -1.26 Total: 2.86 kcal Total: -67.05 1.54 -65.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714654707.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.894 kcal (2) G-P(sol) polarization free energy of solvation -67.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds