Wall clock time and date at job start Sat Apr 11 2020 05:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.30350 * 2 1 4 4 C 1.54387 * 110.34010 * 237.82183 * 2 1 3 5 5 N 1.48144 * 104.61981 * 217.26098 * 4 2 1 6 6 C 1.34777 * 127.83835 * 219.59084 * 5 4 2 7 7 O 1.21288 * 119.99593 * 180.02562 * 6 5 4 8 8 C 1.50697 * 120.00369 * 0.02562 * 6 5 4 9 9 C 1.52997 * 109.47466 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 6 11 11 C 1.33639 * 126.03597 * 89.99975 * 10 9 8 12 12 N 1.31781 * 114.50139 * 179.97438 * 11 10 9 13 13 C 1.29033 * 117.12391 * 0.02562 * 12 11 10 14 14 S 1.70977 * 110.16400 * 359.72624 * 13 12 11 15 15 C 1.48144 * 104.32215 * 39.84793 * 5 4 2 16 16 C 1.54287 * 110.34196 * 122.28823 * 2 1 3 17 17 C 1.52998 * 110.34326 * 0.02562 * 16 2 1 18 18 C 1.52993 * 110.34266 * 237.74016 * 16 2 1 19 19 N 1.46501 * 109.47249 * 180.02562 * 18 16 2 20 20 C 1.36940 * 119.99765 * 179.97438 * 19 18 16 21 21 H 1.07996 * 120.00252 * 0.02562 * 20 19 18 22 22 C 1.38817 * 119.99339 * 179.97438 * 20 19 18 23 23 N 1.31614 * 120.00423 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99441 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.46913 * 60.00292 * 24 22 20 26 26 H 1.48495 * 109.46754 * 180.02562 * 24 22 20 27 27 H 1.48494 * 109.47225 * 300.00476 * 24 22 20 28 28 H 1.09000 * 109.46951 * 180.72249 * 1 2 3 29 29 H 1.08999 * 109.47285 * 300.71962 * 1 2 3 30 30 H 1.08999 * 109.47244 * 60.72180 * 1 2 3 31 31 H 1.09007 * 110.40158 * 98.47839 * 4 2 1 32 32 H 1.09001 * 110.51151 * 336.10215 * 4 2 1 33 33 H 1.09002 * 109.47120 * 59.99760 * 8 6 5 34 34 H 1.08998 * 109.46862 * 300.00562 * 8 6 5 35 35 H 1.09002 * 109.47153 * 59.99773 * 9 8 6 36 36 H 1.09001 * 109.46832 * 299.99964 * 9 8 6 37 37 H 1.08006 * 122.75162 * 0.02562 * 11 10 9 38 38 H 1.07993 * 124.91591 * 179.97438 * 13 12 11 39 39 H 1.08997 * 110.40293 * 78.93872 * 15 5 4 40 40 H 1.08994 * 110.41118 * 201.36737 * 15 5 4 41 41 H 1.08997 * 109.47647 * 59.99574 * 17 16 2 42 42 H 1.08998 * 109.47353 * 180.02562 * 17 16 2 43 43 H 1.09005 * 109.46781 * 299.99281 * 17 16 2 44 44 H 1.08999 * 109.47335 * 300.00275 * 18 16 2 45 45 H 1.09004 * 109.47262 * 59.99777 * 18 16 2 46 46 H 0.96995 * 119.99699 * 0.02562 * 19 18 16 47 47 H 0.96996 * 119.99868 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0667 -0.7709 -1.2252 5 7 3.2664 -1.4810 -0.7241 6 6 4.4424 -1.6651 -1.3563 7 8 5.3365 -2.2744 -0.8083 8 6 4.6464 -1.1138 -2.7439 9 6 6.0558 -1.4599 -3.2281 10 6 6.2596 -0.9092 -4.6160 11 6 6.7373 0.3015 -4.9191 12 7 6.8218 0.5481 -6.2109 13 6 6.4415 -0.3872 -7.0144 14 16 5.9170 -1.7505 -6.1257 15 6 2.8779 -1.9484 0.6269 16 6 2.0664 -0.7728 1.2230 17 6 0.9062 -1.3061 2.0658 18 6 2.9692 0.1285 2.0675 19 7 3.4677 -0.6235 3.2217 20 6 4.3008 -0.0188 4.1249 21 1 4.5898 1.0126 3.9865 22 6 4.7727 -0.7312 5.2188 23 7 4.4200 -1.9879 5.3877 24 14 5.9085 0.0939 6.4513 25 1 5.2189 1.2625 7.0546 26 1 6.2681 -0.8743 7.5182 27 1 7.1415 0.5492 5.7604 28 1 -0.3633 -1.0276 0.0130 29 1 -0.3634 0.5250 0.8834 30 1 -0.3634 0.5026 -0.8964 31 1 2.3400 -0.0775 -2.0207 32 1 1.3242 -1.4845 -1.5827 33 1 4.5235 -0.0309 -2.7263 34 1 3.9124 -1.5518 -3.4203 35 1 6.1783 -2.5429 -3.2458 36 1 6.7901 -1.0223 -2.5517 37 1 7.0308 1.0190 -4.1670 38 1 6.4564 -0.3202 -8.0921 39 1 2.2595 -2.8431 0.5562 40 1 3.7640 -2.1446 1.2306 41 1 0.2960 -1.9769 1.4611 42 1 1.3005 -1.8485 2.9251 43 1 0.2954 -0.4723 2.4121 44 1 3.8111 0.4675 1.4640 45 1 2.3998 0.9912 2.4138 46 1 3.2084 -1.5498 3.3457 47 1 4.7495 -2.4856 6.1523 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182629248.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:00:02 Heat of formation + Delta-G solvation = -3.531316 kcal Electronic energy + Delta-G solvation = -27027.351336 eV Core-core repulsion = 23336.185865 eV Total energy + Delta-G solvation = -3691.165471 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.45885 -40.58804 -39.56344 -36.48989 -35.22150 -34.62982 -33.14822 -31.27536 -30.49227 -28.26655 -27.65171 -26.68368 -26.29490 -25.16273 -24.00505 -22.39457 -20.99223 -20.27210 -19.73069 -19.14936 -18.97374 -17.92170 -17.17308 -16.71055 -16.67522 -16.35354 -16.08615 -15.57146 -15.35644 -15.29969 -14.92798 -14.83446 -14.62286 -14.55295 -14.20084 -13.80783 -13.59049 -13.43173 -13.10799 -13.01073 -12.88302 -12.83745 -12.67799 -12.61301 -12.58374 -12.31005 -12.12481 -11.96617 -11.89496 -11.58962 -11.26241 -11.16147 -10.98189 -10.93810 -10.59529 -10.19959 -9.87656 -9.71949 -9.00637 -7.97309 -5.25169 -0.24809 0.42304 0.81235 1.42289 1.46344 1.52124 1.61125 1.82964 2.01202 2.53220 3.32216 3.36071 3.50443 3.60577 3.68296 3.79639 3.89344 3.98997 4.16970 4.21604 4.25024 4.36050 4.38695 4.42167 4.47131 4.51692 4.62098 4.68990 4.74784 4.83586 4.88291 4.92125 4.94945 5.01620 5.02095 5.09198 5.14689 5.20368 5.23981 5.32934 5.41534 5.46326 5.48020 5.68861 6.25145 6.61621 6.75145 7.15044 7.31473 8.08411 8.31627 9.26114 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.012300 B = 0.002680 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.795599 B =10444.938705 C =11867.596085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 H 0.080 0.920 4 C 0.105 3.895 5 N -0.622 5.622 6 C 0.521 3.479 7 O -0.594 6.594 8 C -0.114 4.114 9 C -0.024 4.024 10 C -0.220 4.220 11 C 0.022 3.978 12 N -0.503 5.503 13 C 0.017 3.983 14 S 0.154 5.846 15 C 0.114 3.886 16 C -0.068 4.068 17 C -0.127 4.127 18 C 0.170 3.830 19 N -0.739 5.739 20 C -0.247 4.247 21 H 0.070 0.930 22 C -0.075 4.075 23 N -0.968 5.968 24 Si 0.972 3.028 25 H -0.274 1.274 26 H -0.293 1.293 27 H -0.283 1.283 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.106 0.894 32 H 0.099 0.901 33 H 0.115 0.885 34 H 0.122 0.878 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.179 0.821 38 H 0.229 0.771 39 H 0.080 0.920 40 H 0.039 0.961 41 H 0.084 0.916 42 H 0.029 0.971 43 H 0.067 0.933 44 H -0.002 1.002 45 H 0.023 0.977 46 H 0.375 0.625 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.103 2.409 -28.020 29.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.111 4.111 3 H 0.098 0.902 4 C -0.016 4.016 5 N -0.354 5.354 6 C 0.311 3.689 7 O -0.475 6.475 8 C -0.154 4.154 9 C -0.064 4.064 10 C -0.342 4.342 11 C -0.129 4.129 12 N -0.216 5.216 13 C -0.280 4.280 14 S 0.407 5.593 15 C -0.009 4.009 16 C -0.069 4.069 17 C -0.184 4.184 18 C 0.043 3.957 19 N -0.382 5.382 20 C -0.379 4.379 21 H 0.088 0.912 22 C -0.267 4.267 23 N -0.619 5.619 24 Si 0.801 3.199 25 H -0.199 1.199 26 H -0.219 1.219 27 H -0.210 1.210 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.124 0.876 32 H 0.118 0.882 33 H 0.133 0.867 34 H 0.140 0.860 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.195 0.805 38 H 0.245 0.755 39 H 0.099 0.901 40 H 0.058 0.942 41 H 0.102 0.898 42 H 0.048 0.952 43 H 0.086 0.914 44 H 0.016 0.984 45 H 0.041 0.959 46 H 0.209 0.791 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.616 1.761 -28.294 29.354 hybrid contribution 1.381 0.519 2.104 2.569 sum -6.236 2.281 -26.190 27.018 Atomic orbital electron populations 1.21866 0.91699 1.03047 1.02782 1.22138 0.97956 0.99016 0.91999 0.90207 1.22815 0.85775 0.96165 0.96883 1.49096 1.13809 1.55293 1.17238 1.21046 0.79884 0.79181 0.88740 1.90741 1.42903 1.44538 1.69337 1.21619 0.98731 1.03956 0.91059 1.19637 0.96595 1.01331 0.88827 1.25916 1.09682 0.98694 0.99885 1.21962 1.01971 0.96450 0.92478 1.66381 1.18945 1.32826 1.03494 1.28957 1.01077 0.92042 1.05947 1.83993 1.59604 1.19125 0.96606 1.22419 0.98204 0.96944 0.83351 1.21673 0.95098 0.94656 0.95519 1.21824 0.96524 1.01340 0.98751 1.20762 0.93818 0.93655 0.87426 1.42572 1.56963 1.12796 1.25919 1.19553 1.20351 0.95859 1.02105 0.91227 1.25553 1.03165 0.96810 1.01193 1.69800 1.50571 1.09820 1.31666 0.85232 0.78839 0.77339 0.78489 1.19948 1.21904 1.20958 0.91217 0.92420 0.90342 0.87586 0.88246 0.86702 0.86031 0.90497 0.90375 0.80450 0.75513 0.90145 0.94180 0.89763 0.95202 0.91388 0.98393 0.95888 0.79130 0.93992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 7.93 71.98 0.57 -1.35 16 2 C -0.09 -1.83 3.30 -9.89 -0.03 -1.86 16 3 H 0.08 1.66 7.72 -2.39 -0.02 1.64 16 4 C 0.10 1.74 6.45 86.53 0.56 2.30 16 5 N -0.62 -16.98 3.31 -807.17 -2.67 -19.65 16 6 C 0.52 15.52 7.91 87.66 0.69 16.22 16 7 O -0.59 -24.65 16.25 -3.05 -0.05 -24.70 16 8 C -0.11 -2.08 4.66 29.85 0.14 -1.94 16 9 C -0.02 -0.48 5.04 29.85 0.15 -0.32 16 10 C -0.22 -3.80 5.85 24.64 0.14 -3.65 16 11 C 0.02 0.41 11.25 83.66 0.94 1.35 16 12 N -0.50 -9.63 10.54 -203.74 -2.15 -11.78 16 13 C 0.02 0.22 12.23 130.65 1.60 1.81 16 14 S 0.15 1.94 23.22 -56.49 -1.31 0.63 16 15 C 0.11 3.83 5.93 86.68 0.51 4.35 16 16 C -0.07 -2.06 0.74 -51.14 -0.04 -2.10 16 17 C -0.13 -3.61 7.11 71.98 0.51 -3.10 16 18 C 0.17 7.04 4.96 86.38 0.43 7.47 16 19 N -0.74 -39.19 4.80 -343.45 -1.65 -40.84 16 20 C -0.25 -14.51 9.99 84.03 0.84 -13.67 16 21 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 22 C -0.07 -4.50 5.50 84.86 0.47 -4.04 16 23 N -0.97 -61.58 13.06 21.65 0.28 -61.30 16 24 Si 0.97 48.27 29.55 68.60 2.03 50.30 16 25 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 26 H -0.29 -14.52 7.11 99.48 0.71 -13.82 16 27 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 28 H 0.07 0.89 6.61 -2.39 -0.02 0.87 16 29 H 0.06 0.92 6.98 -2.39 -0.02 0.90 16 30 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.11 1.17 7.30 -2.38 -0.02 1.15 16 32 H 0.10 1.19 7.87 -2.39 -0.02 1.17 16 33 H 0.11 1.71 7.95 -2.39 -0.02 1.69 16 34 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.08 1.68 8.10 -2.39 -0.02 1.66 16 36 H 0.08 1.85 8.10 -2.39 -0.02 1.83 16 37 H 0.18 3.02 8.06 -2.91 -0.02 3.00 16 38 H 0.23 1.23 8.06 -2.91 -0.02 1.21 16 39 H 0.08 2.41 7.84 -2.39 -0.02 2.39 16 40 H 0.04 1.83 6.96 -2.39 -0.02 1.81 16 41 H 0.08 1.82 6.67 -2.39 -0.02 1.80 16 42 H 0.03 1.08 6.75 -2.39 -0.02 1.06 16 43 H 0.07 1.81 6.89 -2.38 -0.02 1.79 16 44 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 45 H 0.02 0.94 8.14 -2.38 -0.02 0.93 16 46 H 0.38 21.04 5.99 -92.71 -0.56 20.49 16 47 H 0.25 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -81.14 387.46 2.38 -78.75 By element: Atomic # 1 Polarization: 26.71 SS G_CDS: 0.42 Total: 27.13 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: 7.49 Total: 1.46 kcal Atomic # 7 Polarization: -127.38 SS G_CDS: -6.19 Total: -133.57 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.05 Total: -24.70 kcal Atomic # 14 Polarization: 48.27 SS G_CDS: 2.03 Total: 50.30 kcal Atomic # 16 Polarization: 1.94 SS G_CDS: -1.31 Total: 0.63 kcal Total: -81.14 2.38 -78.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182629248.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.222 kcal (2) G-P(sol) polarization free energy of solvation -81.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds